View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623_2D_high_35 (Length: 367)
Name: NF1623_2D_high_35
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_high_35 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 5267429 - 5267253
Alignment:
| Q |
1 |
aattttgaaaattcaaaatagattcaatatttcagaaaactttgaaaaatgacaaaacatgtttttcggtgtttctagaaaagtatt--ctcttgttagc |
98 |
Q |
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| T |
5267429 |
aattttgaaaattcaaaatagattcaatatttcagaaaactttgaaaaatgtcaaaacatgtttttcggtgtttctagaaaagtattctctcttgttagc |
5267330 |
T |
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| Q |
99 |
ttccaacttctctctaagaaaatttaaagaaaaaatcataaccaaatgccattccagccatcaatagacaaagtaaa |
175 |
Q |
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| T |
5267329 |
ttccaacttctctctaagacaatttaaaggaaaaatcataaccaaatgccattccagccatcaatagacaaagtaaa |
5267253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 299 - 367
Target Start/End: Complemental strand, 5267231 - 5267163
Alignment:
| Q |
299 |
tgacacatttcaaaaagtgtctactagcttgaggatcaactattgattttgaacttcacctccaaagag |
367 |
Q |
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| T |
5267231 |
tgacacatttcaaaaagtgtctaccagcttgaggatcaactattgattttgaacttcacctccaaagag |
5267163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 252 - 287
Target Start/End: Complemental strand, 5267162 - 5267127
Alignment:
| Q |
252 |
agagtgtttcactataatatcattctaaatcgatta |
287 |
Q |
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| T |
5267162 |
agagtgtttcactataatatcattctaaatcgatta |
5267127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 324 - 367
Target Start/End: Complemental strand, 5272485 - 5272442
Alignment:
| Q |
324 |
agcttgaggatcaactattgattttgaacttcacctccaaagag |
367 |
Q |
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| T |
5272485 |
agcttgaggattaactattgattgtgaacttcacctccaaagag |
5272442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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