View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623_2D_high_39 (Length: 354)
Name: NF1623_2D_high_39
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_high_39 |
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Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 19 - 345
Target Start/End: Complemental strand, 3048800 - 3048474
Alignment:
| Q |
19 |
atctactcctcatattataaaacgatggaagtagaaactttcattgtgtgtgatatgcttctccccaatgtgccacgatccacaacaagcaatgttacgg |
118 |
Q |
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| T |
3048800 |
atctactcctcatattataaaacgatggaagtagaaactttcattgtgtgtgatatgcttctccccaatgtgccacgatccacaacaaggaatgttacgg |
3048701 |
T |
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| Q |
119 |
atgttacgaaaacataaataaaattctctatactatataagcaatgctatggatcttatgaaaacataaatataattatatactataattcaatctggtc |
218 |
Q |
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| T |
3048700 |
atgttacgaaaacataaataaaattctctatactatataagcaatgctatggatcttatgaaaacataaataaaattatacactataattcaatctggtc |
3048601 |
T |
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| Q |
219 |
aatttattcgcaaataaaaggaaaaacacaaggaatgaggtccaaacataaagtgtataataannnnnnnnacaagacataaagtgtagaataataaaca |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3048600 |
aatttattcgcaaataaaaggaaaaacacaaggaatgaggtccaaacataaagtgtataataattttttttacaagacataaagtgtagaataataaaca |
3048501 |
T |
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| Q |
319 |
tgctactcagcaagagaataatctacc |
345 |
Q |
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| T |
3048500 |
tgctactcaacaagagaataatctacc |
3048474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 34609420 - 34609361
Alignment:
| Q |
53 |
aaactttcattgtgtgtgatatgcttctccccaatgtgccacgatccacaacaagcaatg |
112 |
Q |
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| T |
34609420 |
aaactttcatggtgcatgatacgcttctccccaatgtgccacaatccacaacaagcaatg |
34609361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 33465429 - 33465488
Alignment:
| Q |
53 |
aaactttcattgtgtgtgatatgcttctccccaatgtgccacgatccacaacaagcaatg |
112 |
Q |
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|||||||||||||| ||||||||||||| | ||||||||| ||||||||||||||||| |
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| T |
33465429 |
aaactttcattgtgcatgatatgcttctcttctatgtgccacaatccacaacaagcaatg |
33465488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 34606326 - 34606267
Alignment:
| Q |
53 |
aaactttcattgtgtgtgatatgcttctccccaatgtgccacgatccacaacaagcaatg |
112 |
Q |
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|||||||||| ||| |||||||||||||| ||||||||||| |||||| ||||| |||| |
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| T |
34606326 |
aaactttcatggtgcatgatatgcttctcctcaatgtgccacaatccacgacaagaaatg |
34606267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 345
Target Start/End: Original strand, 33465633 - 33465679
Alignment:
| Q |
299 |
aaagtgtagaataataaacatgctactcagcaagagaataatctacc |
345 |
Q |
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||||||||||||||||| ||||||||||| ||||| |||||||||| |
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| T |
33465633 |
aaagtgtagaataataagcatgctactcaaaaagagtataatctacc |
33465679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 118
Target Start/End: Original strand, 30858486 - 30858531
Alignment:
| Q |
73 |
atgcttctccccaatgtgccacgatccacaacaagcaatgttacgg |
118 |
Q |
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||||||||| ||||||||| ||||||||||| |||||||||||||| |
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| T |
30858486 |
atgcttctctccaatgtgcaacgatccacaataagcaatgttacgg |
30858531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 207 - 266
Target Start/End: Original strand, 38866317 - 38866376
Alignment:
| Q |
207 |
ttcaatctggtcaatttattcgcaaataaaaggaaaaacacaaggaatgaggtccaaaca |
266 |
Q |
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|||||||| |||| |||||||||||| ||||||||| |||||| ||| ||||||||||| |
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| T |
38866317 |
ttcaatcttgtcagtttattcgcaaacaaaaggaaagacacaaagaacaaggtccaaaca |
38866376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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