View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1623_2D_high_4 (Length: 791)

Name: NF1623_2D_high_4
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1623_2D_high_4
NF1623_2D_high_4
[»] chr6 (5 HSPs)
chr6 (722-773)||(28699339-28699390)
chr6 (164-224)||(28705952-28706013)
chr6 (735-767)||(34925139-34925171)
chr6 (380-454)||(26210747-26210821)
chr6 (734-767)||(34929503-34929536)
[»] chr8 (2 HSPs)
chr8 (381-437)||(27505696-27505752)
chr8 (380-454)||(29802714-29802788)
[»] chr3 (3 HSPs)
chr3 (404-454)||(9281470-9281520)
chr3 (380-437)||(22755517-22755574)
chr3 (399-437)||(28389278-28389316)
[»] chr5 (1 HSPs)
chr5 (368-448)||(34278746-34278827)
[»] chr4 (1 HSPs)
chr4 (380-437)||(20651426-20651483)


Alignment Details
Target: chr6 (Bit Score: 48; Significance: 5e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 722 - 773
Target Start/End: Complemental strand, 28699390 - 28699339
Alignment:
Q  722 aacacattcaaatagttatataggaaatagtacagaataacaagaccaagat 773  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28699390 aacacattcaaatagctatataggaaatagtacagaataacaagaccaagat 28699339  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 28706013 - 28705952
Alignment:
Q  164 aaaaacctaaactccaaattcgaagaatcacaaaacagaatcaaagg-taaaaagagaaata 224  Q
    |||||||||| |||||||||||| ||||||||||||| |||||||||  |||||||||||||    
T  28706013 aaaaacctaacctccaaattcgaggaatcacaaaacataatcaaaggaaaaaaagagaaata 28705952  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 735 - 767
Target Start/End: Original strand, 34925139 - 34925171
Alignment:
Q  735 agttatataggaaatagtacagaataacaagac 767  Q
    |||||||||||||||||||||||||||||||||    
T  34925139 agttatataggaaatagtacagaataacaagac 34925171  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 380 - 454
Target Start/End: Complemental strand, 26210821 - 26210747
Alignment:
Q  380 aaaataaggtcaaattatcttatatgaatagtacacattttgaaattaggtcatttaatataggacggagggagt 454  Q
    ||||||||||||||| || ||||| ||| | ||   ||||| |||||||||||||||||||||||  ||||||||    
T  26210821 aaaataaggtcaaatcatgttatacgaacaatatgtatttttaaattaggtcatttaatataggaaagagggagt 26210747  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 734 - 767
Target Start/End: Original strand, 34929503 - 34929536
Alignment:
Q  734 tagttatataggaaatagtacagaataacaagac 767  Q
    |||| |||||||||||||||||||||||||||||    
T  34929503 tagtcatataggaaatagtacagaataacaagac 34929536  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 381 - 437
Target Start/End: Complemental strand, 27505752 - 27505696
Alignment:
Q  381 aaataaggtcaaattatcttatatgaatagtacacattttgaaattaggtcatttaa 437  Q
    |||||||||||||  || ||||||||||||||||| |||| ||||||||||||||||    
T  27505752 aaataaggtcaaagcatgttatatgaatagtacacttttttaaattaggtcatttaa 27505696  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 380 - 454
Target Start/End: Original strand, 29802714 - 29802788
Alignment:
Q  380 aaaataaggtcaaattatcttatatgaatagtacacattttgaaattaggtcatttaatataggacggagggagt 454  Q
    |||||| |||||||  || ||||||||||| |||||||||| |||||||||||| ||| || ||| |||||||||    
T  29802714 aaaatatggtcaaaacatattatatgaataatacacattttcaaattaggtcatataaaatgggatggagggagt 29802788  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 404 - 454
Target Start/End: Original strand, 9281470 - 9281520
Alignment:
Q  404 tgaatagtacacattttgaaattaggtcatttaatataggacggagggagt 454  Q
    ||||||||| ||||||| |||||||||||||||| || |||||||||||||    
T  9281470 tgaatagtagacattttcaaattaggtcatttaaaatgggacggagggagt 9281520  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 380 - 437
Target Start/End: Complemental strand, 22755574 - 22755517
Alignment:
Q  380 aaaataaggtcaaattatcttatatgaatagtacacattttgaaattaggtcatttaa 437  Q
    |||||| |||||||  || |||| |||||||| |||||||||||||||||||||||||    
T  22755574 aaaatatggtcaaaacatgttatgtgaatagtgcacattttgaaattaggtcatttaa 22755517  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 399 - 437
Target Start/End: Original strand, 28389278 - 28389316
Alignment:
Q  399 ttatatgaatagtacacattttgaaattaggtcatttaa 437  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  28389278 ttatatgaatagtacacatttttaaagtaggtcatttaa 28389316  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 368 - 448
Target Start/End: Original strand, 34278746 - 34278827
Alignment:
Q  368 atattttagtagaaaa-taaggtcaaattatcttatatgaatagtacacattttgaaattaggtcatttaatataggacgga 448  Q
    |||| ||||||||||| ||||||||||  || ||||||||| | |||||||||| |||||||||||| ||| || |||||||    
T  34278746 atatattagtagaaaaataaggtcaaaacatgttatatgaacaatacacattttaaaattaggtcatataaaatgggacgga 34278827  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 380 - 437
Target Start/End: Complemental strand, 20651483 - 20651426
Alignment:
Q  380 aaaataaggtcaaattatcttatatgaatagtacacattttgaaattaggtcatttaa 437  Q
    |||||| | ||||| ||| ||||||||||||| |||||||| ||||||| ||||||||    
T  20651483 aaaatatgatcaaaatatattatatgaatagttcacatttttaaattagatcatttaa 20651426  T

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