View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1623_2D_high_57 (Length: 258)
Name: NF1623_2D_high_57
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_high_57 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 104; Significance: 6e-52; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 124 - 242
Target Start/End: Original strand, 6606585 - 6606704
Alignment:
| Q |
124 |
tactttaattttgaagtcataaatatacatcataattctttcgaaaa-aatatatatttcataattgttctcttgtgattccgcgttcagttcttaataa |
222 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6606585 |
tactttaattttgaagtcataattatacatcataattctttcgaaaaaaatatatatttcataattgttctcttgtgatttcgcgttcagttcttaataa |
6606684 |
T |
|
| Q |
223 |
tattcattgtgcagaaaaca |
242 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
6606685 |
tattcattgtgcagaaaaca |
6606704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 216
Target Start/End: Complemental strand, 1433865 - 1433773
Alignment:
| Q |
124 |
tactttaattttgaagtcataaatatacatcataattctttcgaaaaaatatatatttcataattgttctcttgtgattccgcgttcagttct |
216 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||| |||||| |||| |||||||||||||||||| |||| | ||||| ||||| |
|
|
| T |
1433865 |
tactttaattttgaaaatataaattcacatcataattctttctaaaaaaattataattcataattgttctcttgcgatttcccgttcggttct |
1433773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 6606481 - 6606525
Alignment:
| Q |
20 |
tcataaacatggacgaacccaaaaatctcgagtagtgagggcaat |
64 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
6606481 |
tcataaacatggacgaacccaaaagtcttgagtagtgagggcaat |
6606525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 124 - 241
Target Start/End: Complemental strand, 29685483 - 29685367
Alignment:
| Q |
124 |
tactttaattttgaagtcataaatatacatcataattctttcgaaaaaatatatatttcataattgttctcttgtgattccgcgttcagttcttaataat |
223 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |||||| ||||| ||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
29685483 |
tactttaattttgaaaatataaatatacatcataattctttccaaaaaa-atatacttcataattattctcttgtgattccgcgttcagtttttaataat |
29685385 |
T |
|
| Q |
224 |
attcattgtgcagaaaac |
241 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
29685384 |
attcattgtggagaaaac |
29685367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 124 - 241
Target Start/End: Complemental strand, 29688635 - 29688517
Alignment:
| Q |
124 |
tactttaattttgaagtcataaatatacatcataattctttcgaaaaaatata-tatttcataattgttctcttgtgattccgcgttcagttcttaataa |
222 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||| |||||| | | ||||||||||||||||||||| |||| || ||||||||||||||| |
|
|
| T |
29688635 |
tactttaattttgaaaacataaatttacatcataattctttccaaaaaaaaaaatatttcataattgttctcttggcattctgcattcagttcttaataa |
29688536 |
T |
|
| Q |
223 |
tattcattgtgcagaaaac |
241 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
29688535 |
tattcattgtggagaaaac |
29688517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 124 - 241
Target Start/End: Original strand, 37647120 - 37647237
Alignment:
| Q |
124 |
tactttaattttgaagtcataaatatacatcataattctttcgaaaaaatatatatttcataattgttctcttgtgattccgcgttcagttcttaataat |
223 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| | |||| ||||| |||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
37647120 |
tactttaattttgaaaacataaatatacatcataattctttccataaaaaatatacttcataattgttctcttggaattccgcgttcggttcttaataat |
37647219 |
T |
|
| Q |
224 |
attcattgtgcagaaaac |
241 |
Q |
| |
|
|||| | ||| ||||||| |
|
|
| T |
37647220 |
attcgtcgtggagaaaac |
37647237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 241
Target Start/End: Complemental strand, 44039580 - 44039511
Alignment:
| Q |
172 |
atatatatttcataattgttctcttgtgattccgcgttcagttcttaataatattcattgtgcagaaaac |
241 |
Q |
| |
|
||||||| |||||||||||||||||| |||| | ||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
44039580 |
atatataattcataattgttctcttgcgatttcacgttcggttcttaataatattcattgtggagaaaac |
44039511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 196
Target Start/End: Complemental strand, 5256830 - 5256762
Alignment:
| Q |
127 |
tttaattttgaagtcataaatatacatcataattctttcgaaaaaatatatatttcataattgttctctt |
196 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||| |||| |||||| ||||| ||||||||||||||||| |
|
|
| T |
5256830 |
tttaattttgaaaacataaatatacattataattgtttccaaaaaa-atatacttcataattgttctctt |
5256762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University