View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623_2D_high_6 (Length: 710)
Name: NF1623_2D_high_6
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 21 - 380
Target Start/End: Original strand, 46755998 - 46756354
Alignment:
| Q |
21 |
tctgcggctgaaagagaagctttcttataaggtggttagttaactgtttctacatttttatgttcacataacataacatgagggttaaatcgaatgttat |
120 |
Q |
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| T |
46755998 |
tctgcggctgatagagaagctttcttataaggtggttagttaactgtttctacatttttatgttcacataacat-----gagggttaaatagaatgttat |
46756092 |
T |
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| Q |
121 |
ttcatttcgtgattgtcctcgaaggttaaataaagacttgtaatggacaactacataatagtgtggtcgt--ttgtacttggagagcatgtattatatat |
218 |
Q |
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| T |
46756093 |
ttcatttcgtgattgtcctcgaaggttaaataaagacttgtaatggacaactacataatagtgtggtcgtgtttgtacttggagagcatgtattatatat |
46756192 |
T |
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| Q |
219 |
caactataagtgaaactcgacttaattggaaatacataatatagctttatttcttcgtttattatttatgcatataaccgagttgtgtactgtaaaatac |
318 |
Q |
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| T |
46756193 |
caactataagtgaaacttgacttaattggaaatacataatatagctttatttcttcgtttattatttatgcatataactgagttgtgtactgtaaaatac |
46756292 |
T |
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| Q |
319 |
atgttactattatattatttgggtttaaatttaataagtcgttctctaaatttatggggtga |
380 |
Q |
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| T |
46756293 |
atgttactattatattatttgggtttaaatttaataagtcgttctctaaatttatggggtga |
46756354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 533 - 691
Target Start/End: Original strand, 46756650 - 46756808
Alignment:
| Q |
533 |
ttcgacgcctctgatgtgactaaaggggtatcccgtgtttataagggatgacgctccctttggcgcgacctgtcttgcggaagacaattaatttgttaac |
632 |
Q |
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| T |
46756650 |
ttcgacgcctctgatgtgactaaaggggtattccgtgtttgtaagggatgacgctccctttggcgcgacctgtcttgcggaagacaattaatttgttaac |
46756749 |
T |
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| Q |
633 |
gctaaaaagttgtagtagaaatccatcaagaagatataataatacacaacattgattac |
691 |
Q |
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| T |
46756750 |
gctaaaaagttgtagtagaaatccatcaagaagatatactaatacacaacattgattac |
46756808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 416 - 520
Target Start/End: Original strand, 46756423 - 46756527
Alignment:
| Q |
416 |
caatttatatatgtcataatttacttccccctttttatgcgaacaattgtaaatgatataatcctgatttttggagaatcaatgttgctgatattgtaac |
515 |
Q |
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| T |
46756423 |
caatttatatatgtcataatttacttccccttttttatgcgaacaattgtaaatgatataatcctgatttttggagaatcaatgttgctgatattgtaac |
46756522 |
T |
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| Q |
516 |
ccatc |
520 |
Q |
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| T |
46756523 |
ccatc |
46756527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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