View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623_2D_high_60 (Length: 246)
Name: NF1623_2D_high_60
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_high_60 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 44054966 - 44054810
Alignment:
| Q |
1 |
cgaagatatctgcaatttagcagaagacaagcgcgtatctctaataatcgttccatttcataaacaacaaacagtcgatggtgcaatggaagcaacaaac |
100 |
Q |
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| T |
44054966 |
cgaagatatctgcaatttagcagaagacaagcgcgtatctctaataatcgttccatttcataaacaacaaacagtcgatggtgcaatggaagcaacaaac |
44054867 |
T |
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| Q |
101 |
atggcatttcaaaccatcaaccaaaatgtactagcaaatgcaccttgctcggtcgga |
157 |
Q |
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| T |
44054866 |
atggcatttcgaaccatcaaccaaaatgtactagcaaatgcaccttgctcggtcgga |
44054810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 151 - 229
Target Start/End: Original strand, 44055058 - 44055136
Alignment:
| Q |
151 |
ggtcggattgagcttcggttcggttgagggcttgatgttctggtttatttgtgttgtgaacaataagcattgctgatgt |
229 |
Q |
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| T |
44055058 |
ggtcggattgagcttcggttcggttgagggcttgatgttctggtttatttgtgttgtgaacaataagcattgctgatgt |
44055136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 153
Target Start/End: Complemental strand, 39236837 - 39236686
Alignment:
| Q |
2 |
gaagatatctgcaatttagcagaagacaagcgcgtatctctaataatcgttccatttcataaacaacaaacagtcgatggtgcaatggaagcaacaaaca |
101 |
Q |
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| T |
39236837 |
gaagatatatgcactttagccgaagaaaagcgtgtcgcctttataatcatcccttttcataagcaacaaacagttgatggcggaatggaatcaacaaaca |
39236738 |
T |
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| Q |
102 |
tggcatttcaaaccatcaaccaaaatgtactagcaaatgcaccttgctcggt |
153 |
Q |
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| T |
39236737 |
tggcatttcgaactgttaaccaaaatgtattagcgaattcgccttgttcggt |
39236686 |
T |
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