View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623_2D_low_102 (Length: 302)
Name: NF1623_2D_low_102
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_low_102 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 44054966 - 44054683
Alignment:
| Q |
1 |
cgaagatatctgcaatttagcagaagacaagcgcgtatctctaataatcgttccatttcataaacaacaaacagtcgatggtgcaatggaagcaacaaac |
100 |
Q |
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| T |
44054966 |
cgaagatatctgcaatttagcagaagacaagcgcgtatctctaataatcgttccatttcataaacaacaaacagtcgatggtgcaatggaagcaacaaac |
44054867 |
T |
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| Q |
101 |
atggcatttcaaaccatcaaccaaaatgtactagcaaatgcaccttgctcggtcggaattctagtcgatagaggcttaagcggttcgaaccggttagcct |
200 |
Q |
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| T |
44054866 |
atggcatttcgaaccatcaaccaaaatgtactagcaaatgcaccttgctcggtcggaattctagtcgatagaggcttaagcggttcgaaccggttagcct |
44054767 |
T |
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| Q |
201 |
cggatcaagtatcacatcatgtagcagtgatgttttttggtggaccggacgacagagaagcattatgctatggatggagaatgt |
284 |
Q |
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| T |
44054766 |
cggatcaagtatcacatcatgtagcagtgatgttttttggtggaccggacgacagagaagcattatgctatggatggagaatgt |
44054683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 2 - 284
Target Start/End: Complemental strand, 39236837 - 39236555
Alignment:
| Q |
2 |
gaagatatctgcaatttagcagaagacaagcgcgtatctctaataatcgttccatttcataaacaacaaacagtcgatggtgcaatggaagcaacaaaca |
101 |
Q |
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| T |
39236837 |
gaagatatatgcactttagccgaagaaaagcgtgtcgcctttataatcatcccttttcataagcaacaaacagttgatggcggaatggaatcaacaaaca |
39236738 |
T |
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| Q |
102 |
tggcatttcaaaccatcaaccaaaatgtactagcaaatgcaccttgctcggtcggaattctagtcgatagaggcttaagcggttcgaaccggttagcctc |
201 |
Q |
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| T |
39236737 |
tggcatttcgaactgttaaccaaaatgtattagcgaattcgccttgttcggttggaattctagtagatagaggcttaaatagttcaaaccgtctaatagc |
39236638 |
T |
|
| Q |
202 |
ggatcaagtatcacatcatgtagcagtgatgttttttggtggaccggacgacagagaagcattatgctatggatggagaatgt |
284 |
Q |
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| T |
39236637 |
tgatcaaatgtctcatcatatagcagttttgttttttggaggaccagatgatagagaagcattaagttatggttggagaatgt |
39236555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 284
Target Start/End: Original strand, 2812867 - 2813008
Alignment:
| Q |
143 |
ccttgctcggtcggaattctagtcgatagaggcttaagcggttcgaaccggttagcctcggatcaagtatcacatcatgtagcagtgatgttttttggtg |
242 |
Q |
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||||| ||||| || |||||||||||||||||| ||| ||| || | ||||||| | | ||||| ||| ||||| || || ||| | || || |||| |
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| T |
2812867 |
ccttgttcggttgggattctagtcgatagaggcctaaacggatccagccggttaactgcaagtcaagcatctcatcaggtggctgtgctattcttcggtg |
2812966 |
T |
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| Q |
243 |
gaccggacgacagagaagcattatgctatggatggagaatgt |
284 |
Q |
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| T |
2812967 |
gaccggatgatagggaagcattatcctatggatggagaatgt |
2813008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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