View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1623_2D_low_105 (Length: 297)
Name: NF1623_2D_low_105
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_low_105 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 48759615 - 48759337
Alignment:
| Q |
19 |
atcaactgcatcagtgcgtttcgcaaacctccctttaatcctaggcctagtttccgcataagctttacgagaagcataacgaattgtcttctcgaatctt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48759615 |
atcaactgcatcagtgcgtttcgcaaacctccctttaatcctaggcctagtttccgcataagctttacgagaagcataacgaattgtcttctcgaatctt |
48759516 |
T |
|
| Q |
119 |
cgattcttcctcttctccctgtacctcataaccctagcttcacgatccaccgccaccgtcccgtaaccacagtttgatatctccggcacggtgttcgagt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
48759515 |
cgattcttcctcttctccctgtacctcataaccctagcttcacgatccaccgccaccgtcccgtaaccacagtttgatatctccggcacggtgttcgcgt |
48759416 |
T |
|
| Q |
219 |
caggaacaactccaacgtccatcgaggaagatgaaatctaatcaatcataacnnnnnnntaagtgtaagatgtatatta |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
48759415 |
caggaacaactccaacgtccatcgaggaagatgaaacctaatcaatcataacaaaaaaataagtgtaagatatatatta |
48759337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 35 - 172
Target Start/End: Original strand, 3419911 - 3420048
Alignment:
| Q |
35 |
cgtttcgcaaacctccctttaatcctaggcctagtttccgcataagctttacgagaagcataacgaattgtcttctcgaatcttcgattcttcctcttct |
134 |
Q |
| |
|
|||||||||||||| |||||||| ||||| |||||||| ||||||||||| | ||||| || ||||| |||||||||||||||| |||||| ||||||| |
|
|
| T |
3419911 |
cgtttcgcaaaccttcctttaattctaggtctagtttctgcataagcttttctcgaagcgtagcgaatagtcttctcgaatcttctattctttctcttct |
3420010 |
T |
|
| Q |
135 |
ccctgtacctcataaccctagcttcacgatccaccgcc |
172 |
Q |
| |
|
| ||||||||||||||||||||||| | ||||||||| |
|
|
| T |
3420011 |
ctctgtacctcataaccctagcttctctttccaccgcc |
3420048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 50 - 167
Target Start/End: Complemental strand, 53657525 - 53657408
Alignment:
| Q |
50 |
cctttaatcctaggcctagtttccgcataagctttacgagaagcataacgaattgtcttctcgaatcttcgattcttcctcttctccctgtacctcataa |
149 |
Q |
| |
|
|||||||| ||||||| ||||| ||||||||||| || ||||| |||||||| |||||||||||| |||| |||||||| ||||| ||||||||||||| |
|
|
| T |
53657525 |
cctttaattctaggccgggtttctgcataagcttttcgtgaagcgtaacgaatagtcttctcgaattttcggttcttccttttctctctgtacctcataa |
53657426 |
T |
|
| Q |
150 |
ccctagcttcacgatcca |
167 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
53657425 |
ccctcgcttcacgatcca |
53657408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 167
Target Start/End: Complemental strand, 29430561 - 29430493
Alignment:
| Q |
99 |
gaattgtcttctcgaatcttcgattcttcctcttctccctgtacctcataaccctagcttcacgatcca |
167 |
Q |
| |
|
|||| |||||||||||| ||| |||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
29430561 |
gaatagtcttctcgaattttcagttcttcctcttctctctgtacctcataaccctcgcttcacgatcca |
29430493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University