View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623_2D_low_113 (Length: 283)
Name: NF1623_2D_low_113
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_low_113 |
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| [»] scaffold0114 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 265
Target Start/End: Original strand, 45383522 - 45383771
Alignment:
| Q |
16 |
aggcagcaaaaatatgctcataacatacgaaggtatggcttgtagaacagattttatcattacctctctgccggctttagagaagcatttgctactccac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
45383522 |
aggcagcaaaaatatgctcataacatacgaaggtatggcttgtagagcagattttatcattacctctctgctggctttagacgagcatttgctactccac |
45383621 |
T |
|
| Q |
116 |
aaattaatcctctgccatactctatctttaataaagcttaaggtagcttttttatttcttccaatcatggatggtaacctgagatatttgcccgtcccaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45383622 |
aaattaatcctctgccatactctatctttaataaagttgaaggtagcttttttatttcttccaatcatggatggtaacccgagatatttgcccgtcccaa |
45383721 |
T |
|
| Q |
216 |
gtaccgcctgaactcctaggatcaaagtaaccacattttggagattattc |
265 |
Q |
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||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
45383722 |
gtaccgcctgaactcctaggatcgaagtaaccacgttttggagattattc |
45383771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 177
Target Start/End: Original strand, 898404 - 898552
Alignment:
| Q |
29 |
atgctcataacatacgaaggtatggcttgtagaacagattttatcattacctctctgccggctttagagaagcatttgctactccacaaattaatcctct |
128 |
Q |
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||||||||||| || || || |||||||| | |||| | |||||||| || ||||| || ||||| | || || || || ||||| |||| || ||| |
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| T |
898404 |
atgctcataacgtaagatggaatggcttgcaaaacatactttatcataacttctctaccagcttttggtaaacacttactgctccaggaattgattttct |
898503 |
T |
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| Q |
129 |
gccatactctatctttaataaagcttaaggtagcttttttatttcttcc |
177 |
Q |
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|||| |||||||||||||||||||| ||||| |||| ||| |||||||| |
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| T |
898504 |
gccaaactctatctttaataaagctgaaggttgcttgtttgtttcttcc |
898552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 7174516 - 7174464
Alignment:
| Q |
62 |
acagattttatcattacctctctgccggctttagagaagcatttgctactcca |
114 |
Q |
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| T |
7174516 |
acagattttatcattacctctcgcccggcttttgataagcattggctactcca |
7174464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 191
Target Start/End: Original strand, 8969994 - 8970153
Alignment:
| Q |
32 |
ctcataacatacgaaggtatggcttgtagaacagattttatcattacctctctgccggctttagagaagcatttgctactccacaaattaatcctctgcc |
131 |
Q |
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||||||||||| || || || | ||| ||||||||||| ||||| ||||| || || |||||||| || ||||| || ||||| | ||||| |||||| |
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| T |
8969994 |
ctcataacataggatggaatagattgaagaacagatttgatcatgacctcccttcctgctttagacaaacatttactgctccagctactaatcttctgcc |
8970093 |
T |
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| Q |
132 |
atactctatctttaataaagcttaaggtagcttttttatttcttccaatcatggatggta |
191 |
Q |
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| T |
8970094 |
acactctatctttaataaacttgaaggttgcttttttacttcttcctaccatagatggta |
8970153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 183
Target Start/End: Original strand, 46389472 - 46389630
Alignment:
| Q |
25 |
aaatatgctcataacatacgaaggtatggcttgtagaacagattttatcattacctctctgccggctttagagaagcatttgctactccacaaattaatc |
124 |
Q |
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||||| |||||||| ||||| || || | |||||||||||||||||||| ||| ||||| || || ||||||| |||||| |||||||||||||| || |
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| T |
46389472 |
aaataagctcataaaatacgttggaattgattgtagaacagattttatcaatacttctcttccagccttagagaggcatttactactccacaaattgatt |
46389571 |
T |
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| Q |
125 |
ctctgccatactctatctttaataaagcttaaggtagcttttttatttcttccaatcat |
183 |
Q |
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||| ||| |||||||| || || ||| | || |||||||| ||| ||| |||||||| |
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| T |
46389572 |
ttcttccaaactctatccttgatgaagttaaatgtagctttcttacttcggccaatcat |
46389630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 153
Target Start/End: Complemental strand, 4166746 - 4166652
Alignment:
| Q |
59 |
agaacagattttatcattacctctctgccggctttagagaagcatttgctactccacaaattaatcctctgccatactctatctttaataaagct |
153 |
Q |
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||||| ||||| ||||| ||||| || || |||||||| ||||||||||||||||| ||| ||| ||||||||||||||||||| || ||||| |
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| T |
4166746 |
agaactgatttgatcatgacctcccttcctgctttagacaagcatttgctactccagctattgatcttctgccatactctatctttgatgaagct |
4166652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0114 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0114
Description:
Target: scaffold0114; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 168
Target Start/End: Original strand, 13142 - 13281
Alignment:
| Q |
29 |
atgctcataacatacgaaggtatggcttgtagaacagattttatcattacctctctgccggctttagagaagcatttgctactccacaaattaatcctct |
128 |
Q |
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|
|||||||| ||||| || || || ||||| ||||||||||| ||||| ||||| || || |||||||| || |||||||| ||||| | |||| || | |
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| T |
13142 |
atgctcatgacataagatggaatagcttgaagaacagatttgatcataacctccctcccagctttagacaaacatttgctgctccaactactaattcttt |
13241 |
T |
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| Q |
129 |
gccatactctatctttaataaagcttaaggtagctttttt |
168 |
Q |
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|||| |||||||| || |||||||| || || |||||||| |
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| T |
13242 |
gccacactctatccttgataaagctgaaagttgctttttt |
13281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 148
Target Start/End: Complemental strand, 1510691 - 1510575
Alignment:
| Q |
32 |
ctcataacatacgaaggtatggcttgtagaacagattttatcattacctctctgccggctttagagaagcatttgctactccacaaattaatcctctgcc |
131 |
Q |
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|
||||| ||||| || || || ||||| || |||||||| ||||| ||||| || || ||||| || || ||||||||||||||| || ||||| | |||| |
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| T |
1510691 |
ctcatgacataagatggaatcgcttgcagcacagatttaatcatcacctccctaccagctttcgacaaacatttgctactccacgaactaatcttttgcc |
1510592 |
T |
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| Q |
132 |
atactctatctttaata |
148 |
Q |
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| T |
1510591 |
acactctgtctttaata |
1510575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 191
Target Start/End: Original strand, 21086606 - 21086765
Alignment:
| Q |
32 |
ctcataacatacgaaggtatggcttgtagaacagattttatcattacctctctgccggctttagagaagcatttgctactccacaaattaatcctctgcc |
131 |
Q |
| |
|
||||||||||| || || || | ||| ||||| ||||||||||| || || || || |||||||| || ||||| || ||||| | ||||| ||| || |
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| T |
21086606 |
ctcataacataggatggaatagattgaagaaccgattttatcatgacttcccttcctgctttagacaaacatttactgctccaactactaatcttctacc |
21086705 |
T |
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| Q |
132 |
atactctatctttaataaagcttaaggtagcttttttatttcttccaatcatggatggta |
191 |
Q |
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| ||||||||||| || || || ||||| ||||||||| ||| ||| | ||||||||||| |
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| T |
21086706 |
acactctatctttgatgaaactgaaggttgcttttttacttcgtcctaccatggatggta |
21086765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 150
Target Start/End: Complemental strand, 34672110 - 34671992
Alignment:
| Q |
32 |
ctcataacatacgaaggtatggcttgtagaacagattttatcattacctctctgccggctttagagaagcatttgctactccacaaattaatcctctgcc |
131 |
Q |
| |
|
||||||||||| |||| ||| ||||| || ||||||| |||||| |||| ||| ||||||| || |||||||| |||||| | ||||||| | |||| |
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| T |
34672110 |
ctcataacatatgaagatattgcttgcagcacagattctatcatcacctatctttcggctttcgacaagcatttactactctaggcattaatcttttgcc |
34672011 |
T |
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| Q |
132 |
atactctatctttaataaa |
150 |
Q |
| |
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| ||||| ||||| ||||| |
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|
| T |
34672010 |
acactctgtctttgataaa |
34671992 |
T |
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