View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623_2D_low_116 (Length: 277)
Name: NF1623_2D_low_116
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_low_116 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 10 - 261
Target Start/End: Complemental strand, 53117057 - 53116807
Alignment:
| Q |
10 |
attattcttcaatacattgatatatatcaaggattaagtaatggagagcaccttgaaggcgtgtctgtgtctttggctggtttgtagtctcaagtttcta |
109 |
Q |
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| T |
53117057 |
attattcttcaatacaatgatatatatcaaggattaagtaatggagagcaccttgaaggcgtgtctgtgtctttggctggtttgtagtctcaagtttcta |
53116958 |
T |
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| Q |
110 |
tttcaacatttttgtttgtggtctcttgtgttgttgctgacttactgtaattgnnnnnnnnnctgtgttaggccgaattatgaacaaagactcttcggat |
209 |
Q |
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| T |
53116957 |
tttcaacatttttgtttgtggtctcttgtgttgttgatgacttactgtaattgttttttttgc-gtgttaggccaaattatgaacaaagactcttcggat |
53116859 |
T |
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| Q |
210 |
gcaaagcttgtcttttatgacctcaagggtggcgtcaaggttatcgctgatg |
261 |
Q |
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| T |
53116858 |
gcaaagcttgtcttttatgacctcaagggtggcgtcaaggttatcgctgatg |
53116807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 126
Target Start/End: Complemental strand, 53120268 - 53120185
Alignment:
| Q |
43 |
ttaagtaatggagagcaccttgaaggcgtgtctgtgtctttggctggtttgtagtctcaagtttctatttcaacatttttgttt |
126 |
Q |
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| T |
53120268 |
ttaagcaatggagaccaccttgaagatgtgtccgtgtctatggctggtagttagtctccggtttctatttcaacagttttgttt |
53120185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 211
Target Start/End: Complemental strand, 53120116 - 53120079
Alignment:
| Q |
174 |
gtgttaggccgaattatgaacaaagactcttcggatgc |
211 |
Q |
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| T |
53120116 |
gtgttaggccgaattataaacaaagactcttcggatgc |
53120079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 53112769 - 53112683
Alignment:
| Q |
12 |
tattcttcaatacattgatatatatcaaggattaagtaatggagagcaccttgaaggcgtgtctgtgtctttggctggtttgtagtc |
98 |
Q |
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| T |
53112769 |
tattgttcaatacatcgatagatacggaggtttaagcaatggggagcaccttgaagacatgtctatttctttggctggttagtagtc |
53112683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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