View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623_2D_low_124 (Length: 257)
Name: NF1623_2D_low_124
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_low_124 |
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Alignment Details
Target: chr5 (Bit Score: 104; Significance: 6e-52; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 105 - 240
Target Start/End: Complemental strand, 10493378 - 10493243
Alignment:
| Q |
105 |
gtgggaacaaacattactctttggtttgaatgagtctccggttgctccgagcaccccccttgcagggaggaagctaaatgtgttacgagtaatttaccaa |
204 |
Q |
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| T |
10493378 |
gtgggaacaaacattactctttggtttgaatgagtcttcggttgctccgagcacccccctcgcaaggaggaagctaagtgtgttactaataatttaccaa |
10493279 |
T |
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| Q |
205 |
atactatatttgagtcattttgtatcaggtctatat |
240 |
Q |
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| T |
10493278 |
atactatatttaagtcattttgtatgaggtctatat |
10493243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 10494237 - 10494126
Alignment:
| Q |
1 |
ttatatagagagtgggtgttgcagaagccgttgttaggcagacgttgagctcgacggttacggattcgtaggaattgtaaccgtcaagcgagattcacgg |
100 |
Q |
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| T |
10494237 |
ttatatagagagtgggtgttgcagaagccgttgttaggcacacgttgagctcgacggttacggattcgtgggaatcgtaaccgtcaagcgagattcacgg |
10494138 |
T |
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| Q |
101 |
gaacgtgggaac |
112 |
Q |
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| T |
10494137 |
gaacgtgggaac |
10494126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 2378637 - 2378578
Alignment:
| Q |
26 |
agccgttgttaggcagacgttgagctcgacggttacggattcgtaggaattgtaaccgtc |
85 |
Q |
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| T |
2378637 |
agccgttgtaaggcatacgtgaggctcgacggttacggattcgtgggaattgtaaccgtc |
2378578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 9 - 174
Target Start/End: Original strand, 27639581 - 27639744
Alignment:
| Q |
9 |
agagtgggtgttgcagaagccgttgttaggcagacgttgagctcgacggttacggattcgtaggaattgtaaccgtcaagcgagattcacgggaacgtgg |
108 |
Q |
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| T |
27639581 |
agagtgggtgttgcaggagttgttgtttggcacatgttgggctcgacggttacagattcgtgggaattgtaaccgtcgagcgagatt-gcgggagcgtgg |
27639679 |
T |
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| Q |
109 |
gaacaaacattactctttggtttgaatgagtctccggttgctccgagcaccccccttgcagggagg |
174 |
Q |
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| T |
27639680 |
ggtgagacgtaactctttggtttgaatgagtcttcggttgctccgagca-cccccttgcagggagg |
27639744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 102
Target Start/End: Complemental strand, 28622651 - 28622576
Alignment:
| Q |
27 |
gccgttgttaggcagacgttgagctcgacggttacggattcgtaggaattgtaaccgtcaagcgagattcacggga |
102 |
Q |
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| T |
28622651 |
gccgttgttaggcatacgtaaggctcgacggttacccattcgtaggaagcgtaaccgtcgagcgagattcgcggga |
28622576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 98
Target Start/End: Complemental strand, 32662606 - 32662559
Alignment:
| Q |
51 |
tcgacggttacggattcgtaggaattgtaaccgtcaagcgagattcac |
98 |
Q |
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| T |
32662606 |
tcgacggttgcagattcgtgggaatcgtaaccgtcaagcgagattcac |
32662559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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