View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623_2D_low_127 (Length: 246)
Name: NF1623_2D_low_127
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_low_127 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 35995222 - 35994994
Alignment:
| Q |
18 |
cttatgagatcaataatgatttgacatttttattaaaaaattcaaattgagatataaagggagactgagagcagatacttccggatcttccttgccaaac |
117 |
Q |
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| T |
35995222 |
cttatgagatcaataatgatttgacatttttattaaaaaattcaaattgagatataaagggagactgagagcagatacttccggatcttccttgccaaac |
35995123 |
T |
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| Q |
118 |
aagcttattctattttatttttcttcacctttatatgatatgatactcacactttcttcacttggtttaaagttttcattctactcttgtcgaaagaaca |
217 |
Q |
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| T |
35995122 |
aagcttattctattttatttttcttcacctttatatgatatgatactcacactttcttcacttggtttaaagttttcattctactcttgtcgaaagaaaa |
35995023 |
T |
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| Q |
218 |
gttttattcttctctatttttgacccttt |
246 |
Q |
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| T |
35995022 |
gttttattcttctctatttttgacccttt |
35994994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 35999890 - 35999661
Alignment:
| Q |
18 |
cttatgagatcaataatgatttgacatttttattaaaaaa-ttcaaattgagatataaagggagactgagagcagatacttccggatcttccttgccaaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35999890 |
cttatgagatcaataatgatttgacatttttattaaaaaaattcaaattgagatataaagggagactgagagcacatacttccggatcttccttgccaaa |
35999791 |
T |
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| Q |
117 |
caagcttattctattttatttttcttcacctttatatgatatgatactcacactttcttcacttggtttaaagttttcattctactcttgtcgaaagaac |
216 |
Q |
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| T |
35999790 |
caagcttattctattttatttttcttcacctttatatgatatgatactcacactttctgcacttggtttaaagttttcattctactcttgtcgaaagaaa |
35999691 |
T |
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| Q |
217 |
agttttattcttctctatttttgacccttt |
246 |
Q |
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| T |
35999690 |
agttttattcttctctattttttacccttt |
35999661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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