View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623_2D_low_130 (Length: 245)
Name: NF1623_2D_low_130
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_low_130 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 3 - 227
Target Start/End: Original strand, 33881969 - 33882193
Alignment:
| Q |
3 |
gacttttaattttgagtttcttgggttttattgttcttagcaggtcatcactatggttgatgctgttgttggtatagtaattgaggaactattgaattca |
102 |
Q |
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| T |
33881969 |
gacttttaattttgagtttctttggttttattgttcttagcaggtcatcactatggttgatgctgttgttggtatagtaattgaggaactattgaattca |
33882068 |
T |
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| Q |
103 |
gttattaaaatgaaagacagagctgagaagttcaaaccaactctagaacgcttaaaagaaactctcgaatcattagcaccattgatcaatcaaatagatg |
202 |
Q |
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| T |
33882069 |
gttattgaaatgaaagacagagctgtgaagttcaaaccaactctagaacgcttagaagaaactctcgaatcattagcaccattgatcaatcaaatagatg |
33882168 |
T |
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| Q |
203 |
aactcaacaagaagttggaccgatc |
227 |
Q |
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| T |
33882169 |
aactcaacaagaagttgaaccgatc |
33882193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 221
Target Start/End: Original strand, 33866208 - 33866368
Alignment:
| Q |
61 |
gatgctgttgttggtatagtaattgaggaactattgaattcagttattaaaatgaaagacagagctgagaagttcaaaccaactctagaacgcttaaaag |
160 |
Q |
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|||||||||||||| | | || |||| |||||| ||| ||||||| || | ||||| ||| |||| ||||||||||||||||||||| | ||| ||| |
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| T |
33866208 |
gatgctgttgttgggaaattagttgaagaactaatgagttcagttgttgacatgaagaacaaagctttgaagttcaaaccaactctagatagattagaag |
33866307 |
T |
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| Q |
161 |
aaactctcgaatcattagcaccattgatcaatcaaatagatgaactcaacaagaagttgga |
221 |
Q |
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| T |
33866308 |
ctacacttcaatcattaggaccattgatcaatcaaatagatgaactcaagaagaaattgga |
33866368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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