View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623_2D_low_132 (Length: 244)
Name: NF1623_2D_low_132
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_low_132 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 6214473 - 6214697
Alignment:
| Q |
1 |
ctttgttgaggttatgggaacacgtccatctatatctccactgcattattattaaataataacaaaaacaagcaatgttacatataaagaaagtgatatt |
100 |
Q |
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| T |
6214473 |
ctttgttgagattatgggaacacgtccatctatatctccactgcattattattaaataataacaaaaacaagcattgttacacataaagaaagtgatatt |
6214572 |
T |
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| Q |
101 |
gataatgtctttgatgtgatattacattataaactttattacctgtacatccaaatgcttataccacttgatattaatccatttatagttggtagaatac |
200 |
Q |
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| T |
6214573 |
gataatgtctttgatgtgatattacattataaactttattacctgtacatccaaatgcttataccacttgatattaatccatttatagttggcagaatac |
6214672 |
T |
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| Q |
201 |
ttgctggactatctgtccaactcag |
225 |
Q |
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| T |
6214673 |
ttgctggactatctgtccaactcag |
6214697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 6176967 - 6177189
Alignment:
| Q |
1 |
ctttgttgaggttatgggaacacgtccatctatatctccactgcattattattaaataataacaaaaacaagcaatgttacatataaagaaagtgatatt |
100 |
Q |
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| T |
6176967 |
ctttgttgaggttataggaacacgtccatctatatctccactgcattattattagataa---caaaacaaagtaatgttagacataaagca-------tt |
6177056 |
T |
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| Q |
101 |
gataatgtct----ttgatgtgatattaca--ttataaactttat--tacctgtacatccaaatgcttataccacttgatattaatccatttatagttgg |
192 |
Q |
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| T |
6177057 |
gataatatctatttttgatgtgacagatcaatttataaagtatatcatacctgtatatccatatgcttataccacttgatattaatccatttatagttgg |
6177156 |
T |
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| Q |
193 |
tagaatacttgctggactatctgtccaactcag |
225 |
Q |
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| T |
6177157 |
tagaatacttgctggactatctgtccaactcag |
6177189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 140 - 221
Target Start/End: Original strand, 6206916 - 6206997
Alignment:
| Q |
140 |
tacctgtacatccaaatgcttataccacttgatattaatccatttatagttggtagaatacttgctggactatctgtccaac |
221 |
Q |
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| T |
6206916 |
tacctgtatatccatatgcttataccacttgatattaactgatttatagttggtagaatactagttggactatctgtccaac |
6206997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 6206777 - 6206827
Alignment:
| Q |
1 |
ctttgttgaggttatgggaacacgtccatctatatctccactgcattatta |
51 |
Q |
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| T |
6206777 |
ctttgttgaggttatgggaacacgcccatctaaatcaccactgcattatta |
6206827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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