View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1623_2D_low_133 (Length: 242)
Name: NF1623_2D_low_133
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_low_133 |
 | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 21 - 239
Target Start/End: Original strand, 33904099 - 33904317
Alignment:
| Q |
21 |
gtcccaccacattgcacatggtattggagcattaccaagacttggttgtgaaacaccaacatattctctaccaatttggtttgaatccgtaatctcttta |
120 |
Q |
| |
|
||||||| |||||||||| |||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
33904099 |
gtcccacaacattgcacacggtattggagcactaccaagacttggttgggaaacaccaacaatatctctaccaatttggtttgaatccgtaatctcttta |
33904198 |
T |
|
| Q |
121 |
ttatcacgattaggcgagacttcaccgtgttgagttgaaaccaccacaattggtgtcacattaatattatgtttcccattcaacgaaggtggatgagttg |
220 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33904199 |
ttatcacgatttggcgagacttcaccgtgttgagttgaaaccgccacaattggtgtcacattaatattatgtttccagttcaacgaaggtggatgagttg |
33904298 |
T |
|
| Q |
221 |
agaaagttcgaggtttagg |
239 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
33904299 |
agaaagttcgaggtttagg |
33904317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 33821355 - 33821451
Alignment:
| Q |
21 |
gtcccaccacattgcacatggtattggagcattaccaagacttggttgtgaaacaccaacatattctctaccaatttggtttgaatccgtaatctct |
117 |
Q |
| |
|
|||| |||||||| ||||||||| ||| ||||||| |||||| |||||||| || | || | |||||||||||||| |||||| || |||||||| |
|
|
| T |
33821355 |
gtccgaccacattccacatggtacgggaacattacctagactttgttgtgaagcagaagcacaatctctaccaatttgatttgaaaccataatctct |
33821451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 33748641 - 33748683
Alignment:
| Q |
186 |
attatgtttcccattcaacgaaggtggatgagttgagaaagtt |
228 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||| |||||| |
|
|
| T |
33748641 |
attatgtttcccattcaaccaaggtgaatgagttgaaaaagtt |
33748683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 33834761 - 33834803
Alignment:
| Q |
186 |
attatgtttcccattcaacgaaggtggatgagttgagaaagtt |
228 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||| |||||| |
|
|
| T |
33834761 |
attatgtttcccattcaaccaaggtgaatgagttgaaaaagtt |
33834803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 33865735 - 33865801
Alignment:
| Q |
169 |
attggtgtcacattaatattatgtttcccattcaacgaaggtggatgagttgagaaagttcgaggtt |
235 |
Q |
| |
|
|||||||||||| | |||||| ||||||||||||| | |||| ||||| ||| ||||||||||||| |
|
|
| T |
33865735 |
attggtgtcacaaaattattatatttcccattcaaccatggtgaatgagatgaaaaagttcgaggtt |
33865801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 148483 - 148698
Alignment:
| Q |
20 |
cgtcccaccacattgcacatggtattggagcattaccaagacttggttgtgaaacaccaacatattctctaccaatttggtttgaatccgtaatctcttt |
119 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| | ||||||||||||| |
|
|
| T |
148483 |
cgtcccaccacattgcacacggtattggagcattaccaagacttggttctgaaacaccaacaatatctctaccaatttggtttggaaccgtaatctcttt |
148582 |
T |
|
| Q |
120 |
attatcacgattaggcgagacttcaccgtgttgagttgaaaccaccacaattggtgtcacattaatattatgtttcccattcaacgaaggtggatgagtt |
219 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
148583 |
attatcacgatttggcgagacttcacagtgttgagttgaaattgccacaattggtgtcgcgttaatattatgtttcccattcaacgaaggtgaatgagtt |
148682 |
T |
|
| Q |
220 |
gagaaagttcgaggtt |
235 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
148683 |
gagaaagttcgaggtt |
148698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University