View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623_2D_low_135 (Length: 240)
Name: NF1623_2D_low_135
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_low_135 |
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Alignment Details
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 85 - 224
Target Start/End: Original strand, 28172768 - 28172909
Alignment:
| Q |
85 |
cattacaacatactggaatctcttttcctcatcttttacaaactcttggggtgaagtttagtcgacagtcaacaaatgtggtggctcatgttcttgctgg |
184 |
Q |
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| T |
28172768 |
cattacaacatactggaatctcttttcctcatcttttacaaactcttggggtgaagtttagtcgacagccaacaaatgtggcggctcatgttcttgctgg |
28172867 |
T |
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| Q |
185 |
tgaagccgcattattagctagtctc--agtttattttgatgt |
224 |
Q |
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| T |
28172868 |
tgaagccacattattcgctagtctcatagtttattttgatgt |
28172909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 28172748 - 28172653
Alignment:
| Q |
1 |
catcataacaagagagttgaaagtatcaactttacttttgagtcaaccacaaaatcgacactatcgaattgcatatctaccaaccattacaacata |
96 |
Q |
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| T |
28172748 |
catcataacaagagagttgaaagtatcaactttacctttgagtcaaccacaaaatcgaccctatcgaattgcatatccgccaaccattgcaacata |
28172653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 10037638 - 10037587
Alignment:
| Q |
37 |
tttgagtcaaccacaaaatcgacactatcgaattgcatatctaccaaccatt |
88 |
Q |
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| T |
10037638 |
tttgagcccaccacaaaatcgacattatcgaattgcatagctaccaaccatt |
10037587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 32111775 - 32111698
Alignment:
| Q |
12 |
gagagttgaaagtatcaact-ttacttttgagtcaaccacaaaatcgacactatcgaattgcatatctaccaaccatt |
88 |
Q |
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| T |
32111775 |
gagaattgaaagcatcagctattacctttgagtccgccacaaaatcaacattatcgaattgcatgtctgccaaccatt |
32111698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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