View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623_2D_low_144 (Length: 223)
Name: NF1623_2D_low_144
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_low_144 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 6 - 209
Target Start/End: Complemental strand, 37893352 - 37893149
Alignment:
| Q |
6 |
agaaaagaactaacctggaagcataagaataagtgtgtcacttgtatcctcatgatcccaatcagagggtggttcaaattcatcatagatacgatcagct |
105 |
Q |
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| T |
37893352 |
agaaatgaactaacctggaagcataagaataagtgtgtcacttgtatcctcatgatcccaatcagagggtggttcaaattcatcatagatacgatcagct |
37893253 |
T |
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| Q |
106 |
tcacgtgtcttttgatcaaaagacattttctgcttaattggtttctctttagcttttatgtttctagcaaaggtagcttaatttgtctaagctcttgttg |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37893252 |
tcacgtgtcttttgatcaaaagacattttctgcttaattggtttctctttagcttttatgtttctagcaaaggtagcttaatttgtctaagctcttgttg |
37893153 |
T |
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| Q |
206 |
gtga |
209 |
Q |
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|||| |
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| T |
37893152 |
gtga |
37893149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 13 - 209
Target Start/End: Complemental strand, 37188449 - 37188252
Alignment:
| Q |
13 |
aactaacctgg-aagcataagaataagtgtgtcacttgtatcctcatgatcccaatcagagggtggttcaaattcatcatagatacgatcagcttcacgt |
111 |
Q |
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||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37188449 |
aactaacctgggaagcataagaattagtgtgtcacttgtatcctcatgatcccaatcagaggatggttcaaattcatcatagatacgatcagcttcacgt |
37188350 |
T |
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| Q |
112 |
gtcttttgatcaaaagacattttctgcttaattggtttctctttagcttttatgtttctagcaaaggtagcttaatttgtctaagctcttgttggtga |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37188349 |
gtcttttgatcaaaagacattttctgcttaattggtttctctttagcttttatgtttctagcaaaggtagcttaatttgtctaagctcttgttggtga |
37188252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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