View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1623_2D_low_147 (Length: 216)

Name: NF1623_2D_low_147
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1623_2D_low_147
NF1623_2D_low_147
[»] chr6 (6 HSPs)
chr6 (13-216)||(3048118-3048321)
chr6 (13-210)||(34605727-34605924)
chr6 (13-210)||(33465835-33466032)
chr6 (13-210)||(34727004-34727201)
chr6 (66-210)||(34608863-34609007)
chr6 (15-71)||(34729380-34729436)
[»] chr3 (10 HSPs)
chr3 (13-216)||(30858743-30858946)
chr3 (20-213)||(39193218-39193411)
chr3 (13-202)||(38866575-38866764)
chr3 (13-213)||(485783-485983)
chr3 (13-135)||(540684-540806)
chr3 (13-132)||(572715-572834)
chr3 (13-135)||(552880-553002)
chr3 (13-135)||(529917-530039)
chr3 (58-130)||(14964157-14964229)
chr3 (13-135)||(562983-563105)
[»] chr4 (2 HSPs)
chr4 (54-211)||(55773825-55773982)
chr4 (54-202)||(55838036-55838184)
[»] chr7 (1 HSPs)
chr7 (61-135)||(32347604-32347678)
[»] chr1 (10 HSPs)
chr1 (58-132)||(49540665-49540739)
chr1 (22-130)||(45196586-45196694)
chr1 (58-133)||(48179215-48179290)
chr1 (58-167)||(40027015-40027124)
chr1 (58-167)||(40140805-40140914)
chr1 (58-98)||(47873734-47873774)
chr1 (59-135)||(49287236-49287312)
chr1 (60-130)||(41185859-41185929)
chr1 (58-135)||(2417954-2418031)
chr1 (58-130)||(49440541-49440613)
[»] chr5 (4 HSPs)
chr5 (61-132)||(31266648-31266719)
chr5 (61-132)||(43156461-43156532)
chr5 (173-213)||(1204521-1204561)
chr5 (13-49)||(1204604-1204640)


Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 216
Target Start/End: Original strand, 3048118 - 3048321
Alignment:
Q  13 gatggacatcttttagtgcttcatattatgtccaaggtaacatttaatgtgtacaagatagatttctcaaccatggattatgtcaagttgaaaactttag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3048118 gatggacatcttttagtgcttcatattatgtccaaggtaacatttaatgtgtacaagatagatttctcaaccatggattatgtcaagttgaaaactttag 3048217  T
Q  113 gtgacattggattattttatgctccgcagagaaagtactatgcattgagcaacccgcgtatgtggggttatgaaaacaattatgtgtatggcatcgatct 212  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |    
T  3048218 gtgacattgcattattttatgctccgcagagaaagtactatgcattgagcaacccgcgtatgtggggttatgaaaacaattctgtgtatgtcatcgatgt 3048317  T
Q  213 tgca 216  Q
    ||||    
T  3048318 tgca 3048321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 13 - 210
Target Start/End: Original strand, 34605727 - 34605924
Alignment:
Q  13 gatggacatcttttagtgcttcatattatgtccaaggtaacatttaatgtgtacaagatagatttctcaaccatggattatgtcaagttgaaaactttag 112  Q
    |||||| |||||||||||||| || ||||||| |||||||| | ||| |||||||||||||| ||||| ||||||||||||||||||||| || |||| |    
T  34605727 gatggatatcttttagtgcttaattttatgtcaaaggtaacgtataacgtgtacaagatagacttctctaccatggattatgtcaagttggaatctttgg 34605826  T
Q  113 gtgacattggattattttatgctccgcagagaaagtactatgcattgagcaacccgcgtatgtggggttatgaaaacaattatgtgtatggcatcgat 210  Q
    ||||||||| | |||||| || ||||| || || ||| |||||||||||||||||||  |||||||||||||| ||||||| | | |||| |||||||    
T  34605827 gtgacattgcaatattttgtgttccgccgaaaaggtattatgcattgagcaacccgcacatgtggggttatgagaacaattctatatatgccatcgat 34605924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 13 - 210
Target Start/End: Complemental strand, 33466032 - 33465835
Alignment:
Q  13 gatggacatcttttagtgcttcatattatgtccaaggtaacatttaatgtgtacaagatagatttctcaaccatggattatgtcaagttgaaaactttag 112  Q
    |||||| ||||||||||| || |||||||||| |||||||||| ||| |||||||||||||| ||||| || |||||||||||||||||| || |||| |    
T  33466032 gatggatatcttttagtgtttaatattatgtcaaaggtaacatataacgtgtacaagatagacttctctactatggattatgtcaagttggaatctttgg 33465933  T
Q  113 gtgacattggattattttatgctccgcagagaaagtactatgcattgagcaacccgcgtatgtggggttatgaaaacaattatgtgtatggcatcgat 210  Q
    ||||||||| | ||||||||| ||||| || || ||| |||||  | ||||||||||| |||||||| ||||| ||||||| | | |||| |||||||    
T  33465932 gtgacattgcaatattttatgttccgccgaaaaggtattatgctctcagcaacccgcgcatgtggggatatgagaacaattctatatatgccatcgat 33465835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 13 - 210
Target Start/End: Original strand, 34727004 - 34727201
Alignment:
Q  13 gatggacatcttttagtgcttcatattatgtccaaggtaacatttaatgtgtacaagatagatttctcaaccatggattatgtcaagttgaaaactttag 112  Q
    |||||| |||||||||||||| || ||||||| |||||||| | ||| |||||||||||||| ||||| ||||||||||||||||||||| || |||| |    
T  34727004 gatggatatcttttagtgcttaattttatgtcaaaggtaacgtataacgtgtacaagatagacttctctaccatggattatgtcaagttggaatctttgg 34727103  T
Q  113 gtgacattggattattttatgctccgcagagaaagtactatgcattgagcaacccgcgtatgtggggttatgaaaacaattatgtgtatggcatcgat 210  Q
     |||||||| | |||||| || ||||| || || ||| |||||| ||||||||||||  |||||||||||||| ||||||| | | |||| |||||||    
T  34727104 ctgacattgcaatattttgtgttccgccgaaaaggtattatgcactgagcaacccgcacatgtggggttatgagaacaattctatctatgccatcgat 34727201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 66 - 210
Target Start/End: Original strand, 34608863 - 34609007
Alignment:
Q  66 caagatagatttctcaaccatggattatgtcaagttgaaaactttaggtgacattggattattttatgctccgcagagaaagtactatgcattgagcaac 165  Q
    ||||||||| ||||| |||||| ||||| |||| ||| || |||| |||||||||| | |||||| || ||||| || || ||| |||||| |||| |||    
T  34608863 caagatagacttctctaccatgaattatatcaaattggaatctttgggtgacattgcaatattttgtgttccgccgaaaaggtattatgcactgagaaac 34608962  T
Q  166 ccgcgtatgtggggttatgaaaacaattatgtgtatggcatcgat 210  Q
    || || |||||||||||||| ||||||| | | |||| |||||||    
T  34608963 ccacgcatgtggggttatgagaacaattctatctatgccatcgat 34609007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 34729380 - 34729436
Alignment:
Q  15 tggacatcttttagtgcttcatattatgtccaaggtaacatttaatgtgtacaagat 71  Q
    |||| |||||| ||||||| || ||||||| |||||||| ||||| |||||||||||    
T  34729380 tggatatctttgagtgcttaatgttatgtcaaaggtaacttttaacgtgtacaagat 34729436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 13 - 216
Target Start/End: Complemental strand, 30858946 - 30858743
Alignment:
Q  13 gatggacatcttttagtgcttcatattatgtccaaggtaacatttaatgtgtacaagatagatttctcaaccatggattatgtcaagttgaaaactttag 112  Q
    |||||||||||| |||||||| || |||| ||||||| |||||||| ||||||||||||||| || ||||||||||||||| | |||||| ||||||| |    
T  30858946 gatggacatcttctagtgcttaattttatatccaaggaaacatttagtgtgtacaagatagacttatcaaccatggattatattaagttggaaactttgg 30858847  T
Q  113 gtgacattggattattttatgctccgcagagaaagtactatgcattgagcaacccgcgtatgtggggttatgaaaacaattatgtgtatggcatcgatct 212  Q
    ||||||||| ||||||||||||||||  || ||||||||| ||| ||||||||||||  ||||||||||| |||||||| ||||| |||| |||||||||    
T  30858846 gtgacattgcattattttatgctccgaggaaaaagtactacgcaatgagcaacccgcacatgtggggttacgaaaacaactatgtctatgtcatcgatct 30858747  T
Q  213 tgca 216  Q
    ||||    
T  30858746 tgca 30858743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 39193411 - 39193218
Alignment:
Q  20 atcttttagtgcttcatattatgtccaaggtaacatttaatgtgtacaagatagatttctcaaccatggattatgtcaagttgaaaactttaggtgacat 119  Q
    |||||||||||||  |||||| |||||| | || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  39193411 atcttttagtgctgaatattaggtccaatgcaatatttaatgtgtacaagatagatttctcaaccatgaattatgtcaagttgaaaactttagatgacat 39193312  T
Q  120 tggattattttatgctccgcagagaaagtactatgcattgagcaacccgcgtatgtggggttatgaaaacaattatgtgtatggcatcgatctt 213  Q
    || |||||||||||||||| | | || ||| |||||||||| ||| || |  |||||||||||| |||||||| ||||||||| ||| ||||||    
T  39193311 tgcattattttatgctccggaaaaaaggtattatgcattgaccaatccacacatgtggggttataaaaacaataatgtgtatgtcattgatctt 39193218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 13 - 202
Target Start/End: Complemental strand, 38866764 - 38866575
Alignment:
Q  13 gatggacatcttttagtgcttcatattatgtccaaggtaacatttaatgtgtacaagatagatttctcaaccatggattatgtcaagttgaaaactttag 112  Q
    |||| |||||||||||||||  || ||| ||||||  |||  |||||| ||||||||||||| ||||||||||||  ||||||||||||| || |||| |    
T  38866764 gatgaacatcttttagtgctaaattttacgtccaacataatgtttaatctgtacaagatagacttctcaaccatgacttatgtcaagttggaatctttgg 38866665  T
Q  113 gtgacattggattattttatgctccgcagagaaagtactatgcattgagcaacccgcgtatgtggggttatgaaaacaattatgtgtatg 202  Q
    ||||||||| ||||||| |||||||  ||| ||||||||||||||||| ||||||  | |||||||||||||||||||||| | ||||||    
T  38866664 gtgacattgcattatttcatgctccaaagaaaaagtactatgcattgaacaacccaagcatgtggggttatgaaaacaattctatgtatg 38866575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 213
Target Start/End: Complemental strand, 485983 - 485783
Alignment:
Q  13 gatggacatcttttagtgcttcatattatgtccaaggtaacatttaatgtgtacaagatagatttctcaaccatggattatgtcaagttgaaaactttag 112  Q
    |||||||| ||||||||| ||||||||  |||| ||| || ||| ||||| ||||||||||| |||||||||||| ||||||||||| || ||||||| |    
T  485983 gatggacaacttttagtggttcatattgagtccgaggaaatattgaatgtttacaagatagacttctcaaccatgaattatgtcaagctggaaactttgg 485884  T
Q  113 gtgacattggattattttatgctccgcagagaaagtactatgcattgagcaacccgcgtatgtggggttatgaaaacaattatgtgtatggcatcgatct 212  Q
    | |||||||  |||||||||||| ||  |  | | | ||||||||||| ||||||| | | |||||||| ||||| ||| | | |||||| |||| ||||    
T  485883 gcgacattgccttattttatgcttcgggggaatacttctatgcattgaacaacccgaggaggtggggttttgaaagcaactctttgtatgccatcaatct 485784  T
Q  213 t 213  Q
    |    
T  485783 t 485783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 13 - 135
Target Start/End: Complemental strand, 540806 - 540684
Alignment:
Q  13 gatggacatcttttagtgcttcatattatgtccaaggtaacatttaatgtgtacaagatagatttctcaaccatggattatgtcaagttgaaaactttag 112  Q
    |||||||| ||||||||| ||||||||   ||| ||| || ||| ||||| ||||||||||| |||||||||||| ||||| ||||| || ||||||| |    
T  540806 gatggacaacttttagtgattcatattgcttccgaggaaatattgaatgtatacaagatagacttctcaaccatgaattatatcaagctggaaactttgg 540707  T
Q  113 gtgacattggattattttatgct 135  Q
    ||||||||| |||||||||||||    
T  540706 gtgacattgcattattttatgct 540684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 13 - 132
Target Start/End: Complemental strand, 572834 - 572715
Alignment:
Q  13 gatggacatcttttagtgcttcatattatgtccaaggtaacatttaatgtgtacaagatagatttctcaaccatggattatgtcaagttgaaaactttag 112  Q
    |||||||| ||||||||| ||||||||   ||| ||| || ||| ||||| ||||||||||| |||||||||||| ||||| ||||| || ||||||| |    
T  572834 gatggacaacttttagtgattcatattgcttcccaggaaatattgaatgtatacaagatagacttctcaaccatgaattatatcaagctggaaactttgg 572735  T
Q  113 gtgacattggattattttat 132  Q
    ||||||||| ||||||||||    
T  572734 gtgacattgcattattttat 572715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 13 - 135
Target Start/End: Complemental strand, 553002 - 552880
Alignment:
Q  13 gatggacatcttttagtgcttcatattatgtccaaggtaacatttaatgtgtacaagatagatttctcaaccatggattatgtcaagttgaaaactttag 112  Q
    |||||||| |||||| || ||||||||   ||  ||| || ||| ||||| ||||||||||| |||||||||||| ||||| ||||| || ||||||| |    
T  553002 gatggacaacttttattgattcatattgcttctgaggaaatattgaatgtatacaagatagacttctcaaccatgaattatatcaagctggaaactttgg 552903  T
Q  113 gtgacattggattattttatgct 135  Q
    ||||||||| |||||||||||||    
T  552902 gtgacattgcattattttatgct 552880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 135
Target Start/End: Complemental strand, 530039 - 529917
Alignment:
Q  13 gatggacatcttttagtgcttcatattatgtccaaggtaacatttaatgtgtacaagatagatttctcaaccatggattatgtcaagttgaaaactttag 112  Q
    |||||||| ||||||||| |||||||||  ||  | | || ||| |||||||||||||| || ||||||| || | ||| |||||| ||| ||||||| |    
T  530039 gatggacaacttttagtgattcatattacatctcaagaaatattaaatgtgtacaagatcgacttctcaatcaagaattttgtcaacttggaaactttgg 529940  T
Q  113 gtgacattggattattttatgct 135  Q
    ||||||||| |||||| ||||||    
T  529939 gtgacattgcattattatatgct 529917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 14964157 - 14964229
Alignment:
Q  58 aatgtgtacaagatagatttctcaaccatggattatgtcaagttgaaaactttaggtgacattggattatttt 130  Q
    |||||||||||||| || |||||||||||| ||||||| || ||| ||||||| || ||||||| ||||||||    
T  14964157 aatgtgtacaagatcgacttctcaaccatgaattatgtgaaattggaaactttgggcgacattgcattatttt 14964229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 135
Target Start/End: Complemental strand, 563105 - 562983
Alignment:
Q  13 gatggacatcttttagtgcttcatattatgtccaaggtaacatttaatgtgtacaagatagatttctcaaccatggattatgtcaagttgaaaactttag 112  Q
    |||||||| ||||||||| |||||||||  ||  | | || ||| ||||||||||  || || ||||||| || | ||| ||| |||||| ||||||| |    
T  563105 gatggacaacttttagtgattcatattacatctcaagaaatattaaatgtgtacataatcgacttctcaatcaagaattttgttaagttggaaactttgg 563006  T
Q  113 gtgacattggattattttatgct 135  Q
    ||||||||| |||||||||||||    
T  563005 gtgacattgcattattttatgct 562983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 54 - 211
Target Start/End: Original strand, 55773825 - 55773982
Alignment:
Q  54 atttaatgtgtacaagatagatttctcaaccatggattatgtcaagttgaaaactttaggtgacattggattattttatgctccgcagagaaagtactat 153  Q
    |||||||||||| ||||| || || ||||||||| | |||||||||||||||||||| || ||||||| |||||| ||||||||     |||| ||||||    
T  55773825 atttaatgtgtataagattgacttttcaaccatgaagtatgtcaagttgaaaactttgggagacattgcattattatatgctcctggtggaaactactat 55773924  T
Q  154 gcattgagcaacccgcgtatgtggggttatgaaaacaattatgtgtatggcatcgatc 211  Q
    || ||||||||||||   |  ||||||||||||| ||| | |||||||| ||| ||||    
T  55773925 gccttgagcaacccgaacagatggggttatgaaagcaactctgtgtatgtcattgatc 55773982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 54 - 202
Target Start/End: Original strand, 55838036 - 55838184
Alignment:
Q  54 atttaatgtgtacaagatagatttctcaaccatggattatgtcaagttgaaaactttaggtgacattggattattttatgctccgcagagaaagtactat 153  Q
    |||||||||||| ||||| || || ||||||||| | |||||||||||||||||||| || ||||||| |||||| ||||||||     |||| ||||||    
T  55838036 atttaatgtgtataagattgacttttcaaccatgaagtatgtcaagttgaaaactttgggagacattgcattattatatgctcctggtggaaactactat 55838135  T
Q  154 gcattgagcaacccgcgtatgtggggttatgaaaacaattatgtgtatg 202  Q
    || ||||||||||||   |  ||||||||||||| ||| | ||||||||    
T  55838136 gccttgagcaacccgaacagatggggttatgaaagcaactctgtgtatg 55838184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 135
Target Start/End: Complemental strand, 32347678 - 32347604
Alignment:
Q  61 gtgtacaagatagatttctcaaccatggattatgtcaagttgaaaactttaggtgacattggattattttatgct 135  Q
    ||||| |||||||| |||||||||||| |||||||||| |||||||||||||| ||| ||| |||| ||||||||    
T  32347678 gtgtataagatagacttctcaaccatgaattatgtcaaattgaaaactttaggcgacgttgcattactttatgct 32347604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 58 - 132
Target Start/End: Complemental strand, 49540739 - 49540665
Alignment:
Q  58 aatgtgtacaagatagatttctcaaccatggattatgtcaagttgaaaactttaggtgacattggattattttat 132  Q
    ||||||||||||||||| |||||||||||||||||||||||     ||||||| || ||||||| ||||||||||    
T  49540739 aatgtgtacaagatagacttctcaaccatggattatgtcaaacaagaaactttgggcgacattgcattattttat 49540665  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 130
Target Start/End: Original strand, 45196586 - 45196694
Alignment:
Q  22 cttttagtgcttcatattatgtccaaggtaacatttaatgtgtacaagatagatttctcaaccatggattatgtcaagttgaaaactttaggtgacattg 121  Q
    ||||||||| || || |||||||||| | || |  |||||||||||||||||  |||||||| ||| |||| ||||   |||||||||| ||||||||||    
T  45196586 cttttagtggttgattttatgtccaacgaaataagtaatgtgtacaagataggcttctcaactatgaattacgtcagactgaaaactttgggtgacattg 45196685  T
Q  122 gattatttt 130  Q
     ||||||||    
T  45196686 cattatttt 45196694  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 133
Target Start/End: Original strand, 48179215 - 48179290
Alignment:
Q  58 aatgtgtacaagatagatttctcaaccatggattatgtcaagttgaaaactttaggtgacattggattattttatg 133  Q
    ||||| |||||||||||||||||||||||| ||||||||||  |  ||||||| ||  |||||| |||||||||||    
T  48179215 aatgtatacaagatagatttctcaaccatgaattatgtcaaactagaaactttgggcaacattgcattattttatg 48179290  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 167
Target Start/End: Original strand, 40027015 - 40027124
Alignment:
Q  58 aatgtgtacaagatagatttctcaaccatggattatgtcaagttgaaaactttaggtgacattggattattttatgctccgcagagaaagtactatgcat 157  Q
    ||||| ||||||||||| |||||||||||| ||||||||||  |  || |||| ||  |||||| |||||||||||||  | ||||||| |  || ||||    
T  40027015 aatgtatacaagatagacttctcaaccatgaattatgtcaaactcgaagctttgggcaacattgcattattttatgctgggaagagaaacttttacgcat 40027114  T
Q  158 tgagcaaccc 167  Q
    ||||||||||    
T  40027115 tgagcaaccc 40027124  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 167
Target Start/End: Original strand, 40140805 - 40140914
Alignment:
Q  58 aatgtgtacaagatagatttctcaaccatggattatgtcaagttgaaaactttaggtgacattggattattttatgctccgcagagaaagtactatgcat 157  Q
    ||||| ||||||||||| |||||||||||| ||||||||||  || ||| ||| || ||||||  ||||||| ||||| |  | ||||| || |||||||    
T  40140805 aatgtatacaagatagacttctcaaccatgaattatgtcaaactggaaagtttgggcgacatttcattatttcatgctgctaacagaaactattatgcat 40140904  T
Q  158 tgagcaaccc 167  Q
    | ||||||||    
T  40140905 taagcaaccc 40140914  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 47873734 - 47873774
Alignment:
Q  58 aatgtgtacaagatagatttctcaaccatggattatgtcaa 98  Q
    ||||||||||||||||| |||||||||||| ||||||||||    
T  47873734 aatgtgtacaagatagacttctcaaccatgaattatgtcaa 47873774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 49287236 - 49287312
Alignment:
Q  59 atgtgtacaagatagatttctcaaccatggattatgtcaagttgaaaactttaggtgacattggattattttatgct 135  Q
    |||||||||||||||| ||||||||||||  |||||| ||  |||||||||| |  ||||||| ||||||| |||||    
T  49287236 atgtgtacaagatagacttctcaaccatgagttatgttaaactgaaaactttggacgacattgtattatttcatgct 49287312  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 41185859 - 41185929
Alignment:
Q  60 tgtgtacaagatagatttctcaaccatggattatgtcaagttgaaaactttaggtgacattggattatttt 130  Q
    ||||||||||||||| |||||||||||| |||||||||   | |||||||| ||  |||||| ||||||||    
T  41185859 tgtgtacaagatagacttctcaaccatgaattatgtcagactaaaaactttgggcaacattgcattatttt 41185929  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 58 - 135
Target Start/End: Complemental strand, 2418031 - 2417954
Alignment:
Q  58 aatgtgtacaagatagatttctcaaccatggattatgtcaagttgaaaactttaggtgacattggattattttatgct 135  Q
    ||||| ||||||||||  |||||||||||| ||||||||||  || ||||||| ||  |||||  |||||||||||||    
T  2418031 aatgtatacaagataggcttctcaaccatgaattatgtcaaactggaaactttgggcaacatttcattattttatgct 2417954  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 49440613 - 49440541
Alignment:
Q  58 aatgtgtacaagatagatttctcaaccatggattatgtcaagttgaaaactttaggtgacattggattatttt 130  Q
    |||| |||||||||||| |||||||| |||  ||||||| | ||| ||||||| ||||||||||  |||||||    
T  49440613 aatgcgtacaagatagacttctcaactatgacttatgtcgaattggaaactttgggtgacattgcgttatttt 49440541  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 31266648 - 31266719
Alignment:
Q  61 gtgtacaagatagatttctcaaccatggattatgtcaagttgaaaactttaggtgacattggattattttat 132  Q
    |||||||||||||| ||| |||||||| |||||||| |  |||| ||||| || ||||||| ||||||||||    
T  31266648 gtgtacaagatagacttcacaaccatgaattatgtcgaactgaacactttgggcgacattgcattattttat 31266719  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 43156532 - 43156461
Alignment:
Q  61 gtgtacaagatagatttctcaaccatggattatgtcaagttgaaaactttaggtgacattggattattttat 132  Q
    ||||| |||||||| ||||||||||||  |||||||||  |||||||||||||  |||||| |||| |||||    
T  43156532 gtgtataagatagacttctcaaccatgagttatgtcaaactgaaaactttaggcaacattgcattactttat 43156461  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 1204561 - 1204521
Alignment:
Q  173 tgtggggttatgaaaacaattatgtgtatggcatcgatctt 213  Q
    |||||||||||||||| |||| |||||||| ||||||||||    
T  1204561 tgtggggttatgaaaaaaattgtgtgtatgtcatcgatctt 1204521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 1204640 - 1204604
Alignment:
Q  13 gatggacatcttttagtgcttcatattatgtccaagg 49  Q
    ||||||||||||||||||||| || ||||||||||||    
T  1204640 gatggacatcttttagtgcttaattttatgtccaagg 1204604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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