View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1623_2D_low_154 (Length: 210)
Name: NF1623_2D_low_154
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_low_154 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 7451526 - 7451336
Alignment:
| Q |
1 |
aattttgttgtgttgtatatgtcacacacaaacaatacacttccatgtttccctccttccatactaatacctttcacgctagccattgaataaaatatta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7451526 |
aattttgttgtgttgtatatgtcacacacaaacaatacacttccatgtttccctccttccatactaatccctttcacgctagccattgaataaaatatta |
7451427 |
T |
|
| Q |
101 |
ctcccattactacgtgcttagtttaatatcagtggctatatcaattttttaagtaagtgtatatgcatggctgtgaactgaacgggtaagc |
191 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7451426 |
ctcccattaccacgtgcttaatttaatatcagtggctatatcaattttttaagtaagtgtatatgcatggttgtgaactgaacgggtaagc |
7451336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University