View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1623_2D_low_16 (Length: 698)

Name: NF1623_2D_low_16
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1623_2D_low_16
NF1623_2D_low_16
[»] chr5 (2 HSPs)
chr5 (2-623)||(18541066-18541683)
chr5 (574-619)||(28452596-28452641)
[»] chr1 (1 HSPs)
chr1 (578-612)||(32722234-32722268)
[»] chr6 (2 HSPs)
chr6 (570-612)||(32908382-32908424)
chr6 (570-602)||(27832653-27832685)
[»] chr4 (1 HSPs)
chr4 (577-637)||(43061677-43061737)
[»] chr2 (2 HSPs)
chr2 (574-619)||(16698737-16698782)
chr2 (574-610)||(26610433-26610469)
[»] chr8 (1 HSPs)
chr8 (576-612)||(43534943-43534979)
[»] chr3 (1 HSPs)
chr3 (572-604)||(53791952-53791984)


Alignment Details
Target: chr5 (Bit Score: 545; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 2 - 623
Target Start/End: Original strand, 18541066 - 18541683
Alignment:
Q  2 cattttccaatcttgttcagaacataacaaagttcagattagtaaatttaagaagaaaacatgacatttaagaaagactttaaacaacaaatggtacctg 101  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18541066 cattttccaatcttgttcagaacataacaaatttcagattagtaaatttaagaagaaaagatgacatttaagaaagactttaaacaacaaatggtacctg 18541165  T
Q  102 agtgggagaaagagtacatggactatgaatgcctcaagaaaatattgaaagaagtcaaaagcagcaagaaagctaaagacaaagacaataagcacttgca 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18541166 agtgggagaaagagtacatggactatgaatgcctcaagaaaatattgaaagaagtcaaaagcagcaagaaagctaaagacagagacaataagcacttgca 18541265  T
Q  202 acacaaattcagccttgaaagagcattcagtggaatacatttgcagcatggtagcaatcatcaaaatgatgaaggtattgaagaccaagttatagaagtt 301  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||    
T  18541266 gcacaaattcagccttgaaagagcattcagtggaatacatttgcagcatggtagcaatcatcaaaatgatgaaggtattggagagcaggttatagaagtt 18541365  T
Q  302 aagacattagagatagatgtagatggttccaaagagttatttgagaccaagttgaatgaagaaagaggagaagctgaggcaaggttttttcagaagcttg 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  18541366 aagacattagagatagatgtagatggttccaaagagttatttgagaccaagttgaatgaagaaagaggagaagctgaggcaaggttccttcagaagcttg 18541465  T
Q  402 atgaagagcttaacaaggttaatgccttttataaggaacaggtggaggcagttaagcatgaagcaacacttttgagtaaacaagttgagactctagttgc 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18541466 atgaagagcttaacaaggttaatgccttttataaggaacaggtggaggcagttaagcatgaagcaacacttttgagtaaacaagttgagactctagttgc 18541565  T
Q  502 attgagggtaaaggttaaaaaccttgatccaggtaaatgcaaaatatgtttttacacgtagttacattcatgacaccgacacatgtagttacattcaatt 601  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||| |||||||||||||| ||||||| ||||||||    
T  18541566 attaagggtaaaggttaaaaaccttgatccaggtaaatgcaaaatatgtttttacacg----tacatttatgacaccgacacacgtagttatattcaatt 18541661  T
Q  602 attttattttcgaaaaattata 623  Q
    ||||||||| ||||||| ||||    
T  18541662 attttatttacgaaaaaatata 18541683  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 574 - 619
Target Start/End: Complemental strand, 28452641 - 28452596
Alignment:
Q  574 acaccgacacatgtagttacattcaattattttattttcgaaaaat 619  Q
    ||||| |||||||| || ||||||||||||||||||||| ||||||    
T  28452641 acaccaacacatgtggtaacattcaattattttattttctaaaaat 28452596  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 578 - 612
Target Start/End: Original strand, 32722234 - 32722268
Alignment:
Q  578 cgacacatgtagttacattcaattattttattttc 612  Q
    |||||||||||||||||||||||||||||||||||    
T  32722234 cgacacatgtagttacattcaattattttattttc 32722268  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 570 - 612
Target Start/End: Complemental strand, 32908424 - 32908382
Alignment:
Q  570 catgacaccgacacatgtagttacattcaattattttattttc 612  Q
    ||||||||||||||| || |||||||||||||||| |||||||    
T  32908424 catgacaccgacacacgtggttacattcaattattctattttc 32908382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 570 - 602
Target Start/End: Complemental strand, 27832685 - 27832653
Alignment:
Q  570 catgacaccgacacatgtagttacattcaatta 602  Q
    ||||||||||| |||||||||||||||||||||    
T  27832685 catgacaccgatacatgtagttacattcaatta 27832653  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 577 - 637
Target Start/End: Original strand, 43061677 - 43061737
Alignment:
Q  577 ccgacacatgtagttacattcaattattt-tattttcgaaaaattataactagtgtcgatgt 637  Q
    ||||||||||| ||||||||||||||||| |||||||   ||||||| ||||||||||||||    
T  43061677 ccgacacatgttgttacattcaattatttatattttc-tcaaattattactagtgtcgatgt 43061737  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 574 - 619
Target Start/End: Original strand, 16698737 - 16698782
Alignment:
Q  574 acaccgacacatgtagttacattcaattattttattttcgaaaaat 619  Q
    ||||||||||||| |||||||||||||||||  |||||| ||||||    
T  16698737 acaccgacacatgcagttacattcaattattagattttctaaaaat 16698782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 574 - 610
Target Start/End: Original strand, 26610433 - 26610469
Alignment:
Q  574 acaccgacacatgtagttacattcaattattttattt 610  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  26610433 acaccaacacatgtagttacactcaattattttattt 26610469  T

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Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 576 - 612
Target Start/End: Complemental strand, 43534979 - 43534943
Alignment:
Q  576 accgacacatgtagttacattcaattattttattttc 612  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  43534979 accgacacatgtagttacattcaaatatttcattttc 43534943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 572 - 604
Target Start/End: Original strand, 53791952 - 53791984
Alignment:
Q  572 tgacaccgacacatgtagttacattcaattatt 604  Q
    |||||||||||||||| ||||||||||||||||    
T  53791952 tgacaccgacacatgtggttacattcaattatt 53791984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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