View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623_2D_low_17 (Length: 675)
Name: NF1623_2D_low_17
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 611; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 1 - 656
Target Start/End: Complemental strand, 41971326 - 41970671
Alignment:
| Q |
1 |
aggaagtttgtgaaaccagcggaagagcatggcggtggacaggcctagttttagcttcactattagnnnnnnnaagtcatttttaatagaaatccaaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
41971326 |
aggaagtttgtgaaaccagcggaagagcatggcggtgggcaggcctagttttagcttcactattagtttttttaagtcatttttaatagaaatccaaatt |
41971227 |
T |
|
| Q |
101 |
acacttactttagcagctctatttaattagagcaccttttgatatttttcgtagtttctcatatagacttattgaaagtaaaaatatttattaaaattaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41971226 |
acacttactttagcagctctatttaattagagcaccttttgatatttttcgtagtttctcatatagacttattgaaagtaaaaatatttattaaaattaa |
41971127 |
T |
|
| Q |
201 |
taatcggattgttatgtcgtttctgttttctcttcttgtattatctaatttttaatttgtataatgcaacctctgaattgtaatttgttttataagactg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
41971126 |
taatcggattgttatgtcgtttctgttttctcttcttgtattatctaatttttaatttgtataatgcaacctctgaattataatttattttataagactg |
41971027 |
T |
|
| Q |
301 |
tttgaattaagataactctttaatttgtcgaatgaggcagtgtctcaatattttattggtgagtatgctattctgatttaaaagtactcatttttgaatt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
41971026 |
tttgaattaagataactctttaatttgtcgaatgaggcagtgtctcaatattttattggtgagcatgctattctgatttaaaagtactcatttttgaatt |
41970927 |
T |
|
| Q |
401 |
tatcaggcttgcttacttttctatgtttgatacaaacctattgaatttcaatgacatttaaagagataatacataccattaaggcaatgatgttattatg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41970926 |
tatcaggcttgcttacttttctatgtttgatacaaacctattgaatttcaatgacatttaaagagataatacataccattaaggcaatgatgttattatg |
41970827 |
T |
|
| Q |
501 |
cttcaaattcgcaatggaaaattgtattcaaagccaaatctcataatcgattgcttcacaatgttattcaaagatttgatatcattcacgctaacctttc |
600 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41970826 |
cttcaaattcacaatggaaaattgtattcaaagccaaatctcataatcgatcgcttcacaatgttattcaaagatttgatatcattcacgctaacctttc |
41970727 |
T |
|
| Q |
601 |
gacaatgcaaccttctatggctgctacttttaaattgacttttggtacgctcacca |
656 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41970726 |
gacaatgcaaccttctatggctgctacttttaaattgacttttggtacgctcacca |
41970671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 1238820 - 1238534
Alignment:
| Q |
1 |
aggaagtttgtgaaaccagcggaagagcatggcggtggacaggcctagttttagcttcactattagnnnnnnnaagtcatttttaatagaaatccaaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1238820 |
aggaagtttgtgaaaccagcggaagagcatggcggtggacaggcctagttttagcttcactattagtttttttaagtcatttttaatagaaatccaaatt |
1238721 |
T |
|
| Q |
101 |
acacttactttagcagctctatttaattagagcaccttttgatatttttcgtagtttctcatatagacttattgaaagtaaaaatatttattaaaattaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1238720 |
acacttactttagcagctctatttaattagagcaccttttgatatttttcgtagtttctcatatagacttattgaaagtaaaaatatttattaaaattaa |
1238621 |
T |
|
| Q |
201 |
taatcggattgttatgtcgtttctgttttctcttcttgta-ttatctaatttttaatttgtataatgcaacctctgaattgtaatttg |
287 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||| |||||||||||||||| ||||||||||| |
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|
| T |
1238620 |
taatcggattgttatgtcatttctgttttctcttcttgtatttttctaatttttaatttttataatgcaacctctg-attgtaatttg |
1238534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 321 - 654
Target Start/End: Complemental strand, 1238540 - 1238212
Alignment:
| Q |
321 |
taatttgtcgaatgaggcagtgtctcaatattttattggtgagtatgctattctgatttaaaagtactcatttttgaatttatcaggcttgcttactttt |
420 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||| ||||||| ||| | ||||||||| ||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
1238540 |
taatttgacgaatgaggcagtgtctcaatagtttactggtgagcatggtgttctgatttcaaagtactcatttttgaatttatcaggtttgcttactttt |
1238441 |
T |
|
| Q |
421 |
ctatgtttgatacaaacctattgaatttcaatgacatttaaagagataatacataccattaaggcaatgatgttattatgcttcaaattcgcaatggaaa |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
1238440 |
ctatgtttgatacaaacctattgaatttcaatgacatttaaagagataatacatgccattaaggcagcgatgttattatgcttcaaattcgcaatggaaa |
1238341 |
T |
|
| Q |
521 |
attgtattcaaagccaaatctcataatcgattgcttcacaatgttattcaaagatttgatatcattcac-----gctaacctttcgacaatgcaaccttc |
615 |
Q |
| |
|
||||||||||| ||||| |||||||| ||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1238340 |
attgtattcaagaccaaagctcataattgatagcttcacaatgt---------atttgatatcattcacgctaagctaacctttcgacaatgcaaccttc |
1238250 |
T |
|
| Q |
616 |
tatggctgctacttttaaattgacttttggtacgctcac |
654 |
Q |
| |
|
||| |||||||||||| ||||||||||||||| |||||| |
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| T |
1238249 |
tat-gctgctacttttcaattgacttttggtatgctcac |
1238212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 74 - 292
Target Start/End: Complemental strand, 42517325 - 42517105
Alignment:
| Q |
74 |
aagtcatttttaatagaaatccaaattacac--ttactttagcagctctatttaattagagcaccttttgatatttttcgtagtttctcatatagactta |
171 |
Q |
| |
|
|||||| |||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
42517325 |
aagtcacttttaatagaaatctaaattacacacttactttaggagctctatttaattagagcaccttttgatatttttcgtagtttctcatatggactta |
42517226 |
T |
|
| Q |
172 |
ttgaaagtaaaaatatttattaaaattaataatcggattgttatgtcgtttctgttttctcttcttgtattatctaatttttaatttgtataatgcaacc |
271 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| | |
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|
| T |
42517225 |
ttggaagtaaaaatatttattaaaattaataatcgaattgttatgtcgttcctgttttctcttcttgtattttctaatttttaatttgtataatgcattc |
42517126 |
T |
|
| Q |
272 |
tctgaattgtaatttgtttta |
292 |
Q |
| |
|
||||||||||||||| ||||| |
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|
| T |
42517125 |
tctgaattgtaatttatttta |
42517105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 42517404 - 42517372
Alignment:
| Q |
30 |
tggcggtggacaggcctagttttagcttcacta |
62 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
42517404 |
tggcggtggacaagcctagttttagcttcacta |
42517372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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