View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1623_2D_low_24 (Length: 584)
Name: NF1623_2D_low_24
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_low_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 465; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 568
Target Start/End: Original strand, 38126465 - 38127016
Alignment:
| Q |
1 |
tagacaaacagaaatatagattgacatatgttgcttattttgcaagttttctactgtatacatggtcctcagatcaaacctataacatgtaggattagtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38126465 |
tagacaaacagaaatatagattgacatatgttgcttattttgcaagttttctactgtatacatggtccttagatcaaacctataacatgtaggattagtt |
38126564 |
T |
|
| Q |
101 |
cacttattttaatgcacattccttaagttttatttctccatatttttgagaaatatttattaaatatatgcatgccttattagttggaatgcatttgaca |
200 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38126565 |
cacttattttaattc--------------ttatttctccatatttttgagaaatatttattaaatatatgcatgccttattagttggaatgcatttgaca |
38126650 |
T |
|
| Q |
201 |
ctgattgtttaattatttggttatatataggttctgcttttttctttgaatgatatatataggttctgcttgtgttgtagttttggttatataactggag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38126651 |
ctgattgtttaattatttggttatatataggttctgcttttttctttgaatgatatatataggttctgcttgtgtcgtagttttggttatataactggag |
38126750 |
T |
|
| Q |
301 |
tgtcatatttggtggagtgatttcttgtttatagtacaagcattggtctaatctttgcgtatcttgtgtttagactatattttacttctagatttttcat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||| |
|
|
| T |
38126751 |
tgtcatatttggtggagtgatttcttgtgtatagtacaagcattggtctaatctttgcgtatcttgcgtctagactatattttacttctaga-ttttcat |
38126849 |
T |
|
| Q |
401 |
tttaaaaagaagtttgtgctatatatcaaacttaaaccttctaccaggaacacctaaatgagagatgataatgaatctcttcaagacttaactagaggtt |
500 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
38126850 |
tttaaaaaggagtttgtgctatatatcaaacttaaaccttctaccaggaacacctaaatgagagatgataatgaatctcttc-tggcttaactagaggtt |
38126948 |
T |
|
| Q |
501 |
ttgagttcgaatcaaactctcggaatgtaacaatgttaaatcttttgaggaagagttttgtcattcat |
568 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38126949 |
ttgagttcgaatcaaactctcggaatgtaacaatgttaaatcttttgaggaagaattttgtcattcat |
38127016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 462 - 564
Target Start/End: Original strand, 38127110 - 38127215
Alignment:
| Q |
462 |
gagatgataatgaatctcttcaagacttaactagaggttttgagttcgaatcaaactctcggaatgtaa----caatgttaaatcttttgaggaagagtt |
557 |
Q |
| |
|
|||||||||||||||||||| || |||| |||||||||||||||||||||| | ||||||||| | || |||||||||||| |||| ||||| || |
|
|
| T |
38127110 |
gagatgataatgaatctctttcag-cttagctagaggttttgagttcgaatccagctctcggaacgcaataattaatgttaaatctcttgatgaagaatt |
38127208 |
T |
|
| Q |
558 |
ttgtcat |
564 |
Q |
| |
|
||||||| |
|
|
| T |
38127209 |
ttgtcat |
38127215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 524 - 568
Target Start/End: Original strand, 15064322 - 15064366
Alignment:
| Q |
524 |
aatgtaacaatgttaaatcttttgaggaagagttttgtcattcat |
568 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
15064322 |
aatgtatcaatgttaaatcttttgaagaagagttttatcattcat |
15064366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 106 - 163
Target Start/End: Original strand, 39708558 - 39708616
Alignment:
| Q |
106 |
attttaatgcacattccttaagttttatttctccata-tttttgagaaatatttattaa |
163 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| ||||| |||||| |||||||| |
|
|
| T |
39708558 |
attttaatgcacattccttaagtcttatttctccatattttttcagaaatgtttattaa |
39708616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 488 - 563
Target Start/End: Complemental strand, 8168951 - 8168877
Alignment:
| Q |
488 |
ttaactagaggttttgagttcgaatcaaactctcggaatgtaacaatgttaaatcttttgaggaagagttttgtca |
563 |
Q |
| |
|
|||||||||||||| ||||||||||| || | | ||||| | |||||||||||||||||| | |||||||||||| |
|
|
| T |
8168951 |
ttaactagaggttt-gagttcgaatctaattatgagaatgcagcaatgttaaatcttttgaaggagagttttgtca |
8168877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 543
Target Start/End: Complemental strand, 37438311 - 37438270
Alignment:
| Q |
502 |
tgagttcgaatcaaactctcggaatgtaacaatgttaaatct |
543 |
Q |
| |
|
|||||| ||||| |||||| |||||||||||||||||||||| |
|
|
| T |
37438311 |
tgagtttgaatccaactctgggaatgtaacaatgttaaatct |
37438270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 531 - 563
Target Start/End: Original strand, 7163920 - 7163952
Alignment:
| Q |
531 |
caatgttaaatcttttgaggaagagttttgtca |
563 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
|
|
| T |
7163920 |
caatgttaaatctattgaggaagagttttgtca |
7163952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 569
Target Start/End: Original strand, 15052033 - 15052066
Alignment:
| Q |
536 |
ttaaatcttttgaggaagagttttgtcattcatc |
569 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |
|
|
| T |
15052033 |
ttaaatcttttgagaaagagttttgtcattcatc |
15052066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 523 - 560
Target Start/End: Complemental strand, 43346398 - 43346361
Alignment:
| Q |
523 |
gaatgtaacaatgttaaatcttttgaggaagagttttg |
560 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
43346398 |
gaatgcaacaatgttaaatctcttgaggaagagttttg |
43346361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University