View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1623_2D_low_27 (Length: 571)

Name: NF1623_2D_low_27
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1623_2D_low_27
NF1623_2D_low_27
[»] chr7 (24 HSPs)
chr7 (15-509)||(29150592-29151086)
chr7 (305-518)||(4579453-4579669)
chr7 (340-540)||(27238225-27238425)
chr7 (310-519)||(25543295-25543504)
chr7 (339-517)||(4930215-4930393)
chr7 (293-390)||(10388427-10388524)
chr7 (342-467)||(13314221-13314346)
chr7 (341-545)||(44423044-44423248)
chr7 (339-467)||(26341181-26341309)
chr7 (339-519)||(44510610-44510790)
chr7 (339-518)||(23246867-23247046)
chr7 (300-509)||(21671138-21671347)
chr7 (339-455)||(9650964-9651080)
chr7 (295-432)||(3357652-3357790)
chr7 (300-442)||(15642177-15642319)
chr7 (358-519)||(23866069-23866230)
chr7 (293-367)||(26287243-26287317)
chr7 (291-509)||(12254011-12254231)
chr7 (339-467)||(8268275-8268403)
chr7 (340-432)||(8076033-8076125)
chr7 (405-545)||(12799458-12799598)
chr7 (341-540)||(9008147-9008345)
chr7 (339-415)||(30256836-30256912)
chr7 (292-332)||(23317930-23317970)
[»] chr4 (34 HSPs)
chr4 (339-518)||(51697899-51698077)
chr4 (339-545)||(37259784-37259990)
chr4 (336-545)||(19101956-19102165)
chr4 (336-545)||(37264471-37264680)
chr4 (337-518)||(42758689-42758870)
chr4 (309-467)||(12878191-12878349)
chr4 (339-545)||(31269016-31269222)
chr4 (339-545)||(31273503-31273709)
chr4 (339-467)||(5271404-5271532)
chr4 (336-518)||(2819823-2820005)
chr4 (293-363)||(23093128-23093198)
chr4 (339-507)||(13059392-13059560)
chr4 (339-455)||(13521989-13522105)
chr4 (339-467)||(31765868-31765996)
chr4 (339-442)||(5928229-5928332)
chr4 (339-546)||(16421011-16421218)
chr4 (336-519)||(33463289-33463472)
chr4 (340-509)||(55251703-55251871)
chr4 (291-518)||(4550932-4551158)
chr4 (336-467)||(8693690-8693821)
chr4 (339-509)||(32082034-32082203)
chr4 (336-545)||(47244227-47244436)
chr4 (339-455)||(12823892-12824008)
chr4 (339-450)||(19106601-19106712)
chr4 (379-545)||(31729294-31729460)
chr4 (324-445)||(13065775-13065896)
chr4 (340-465)||(33468960-33469085)
chr4 (291-416)||(1151334-1151463)
chr4 (379-442)||(16953107-16953170)
chr4 (344-427)||(51696989-51697072)
chr4 (339-429)||(8030499-8030589)
chr4 (344-546)||(19541067-19541269)
chr4 (339-467)||(19906233-19906361)
chr4 (358-430)||(24490033-24490105)
[»] chr8 (31 HSPs)
chr8 (339-545)||(44925831-44926036)
chr8 (293-461)||(24673316-24673484)
chr8 (311-518)||(24090581-24090783)
chr8 (332-546)||(18876273-18876486)
chr8 (339-518)||(19166616-19166795)
chr8 (328-537)||(23548547-23548756)
chr8 (339-467)||(40125870-40125998)
chr8 (336-519)||(31449799-31449982)
chr8 (339-518)||(33416529-33416707)
chr8 (300-545)||(2965574-2965818)
chr8 (339-518)||(1807454-1807634)
chr8 (336-545)||(1910876-1911085)
chr8 (340-439)||(34118449-34118548)
chr8 (336-518)||(15875602-15875784)
chr8 (339-505)||(17025917-17026083)
chr8 (339-505)||(17556409-17556575)
chr8 (336-430)||(4243076-4243170)
chr8 (339-416)||(40130722-40130799)
chr8 (339-430)||(4238337-4238428)
chr8 (371-490)||(17793467-17793586)
chr8 (342-545)||(36683564-36683767)
chr8 (340-442)||(43302728-43302831)
chr8 (339-465)||(17953860-17953986)
chr8 (339-537)||(38182152-38182349)
chr8 (341-450)||(2355461-2355570)
chr8 (339-432)||(28559674-28559767)
chr8 (379-432)||(29220286-29220339)
chr8 (379-432)||(4544271-4544323)
chr8 (358-430)||(17955811-17955882)
chr8 (358-430)||(32015702-32015773)
chr8 (379-467)||(34517264-34517349)
[»] scaffold0352 (1 HSPs)
scaffold0352 (339-545)||(7086-7292)
[»] chr6 (21 HSPs)
chr6 (306-519)||(24589097-24589311)
chr6 (326-518)||(29892195-29892387)
chr6 (311-442)||(11614102-11614233)
chr6 (339-467)||(2700091-2700219)
chr6 (339-546)||(12688953-12689160)
chr6 (339-545)||(11570656-11570862)
chr6 (295-442)||(13736688-13736836)
chr6 (336-467)||(21309010-21309141)
chr6 (306-467)||(20748269-20748430)
chr6 (326-537)||(12406268-12406479)
chr6 (340-503)||(8747765-8747928)
chr6 (379-546)||(33687509-33687676)
chr6 (339-467)||(6407845-6407973)
chr6 (379-517)||(16836091-16836229)
chr6 (379-545)||(17964466-17964632)
chr6 (339-429)||(19674295-19674385)
chr6 (330-467)||(22695256-22695393)
chr6 (382-505)||(14509009-14509132)
chr6 (306-390)||(2760304-2760388)
chr6 (340-396)||(11534734-11534790)
chr6 (340-396)||(11560244-11560300)
[»] chr3 (33 HSPs)
chr3 (339-545)||(758275-758481)
chr3 (339-545)||(23666030-23666236)
chr3 (339-545)||(24038278-24038484)
chr3 (339-540)||(3418975-3419176)
chr3 (294-465)||(12112628-12112799)
chr3 (339-519)||(3033624-3033804)
chr3 (339-518)||(20520034-20520213)
chr3 (339-505)||(7571165-7571331)
chr3 (339-465)||(18467205-18467331)
chr3 (339-519)||(3672566-3672746)
chr3 (339-519)||(3692598-3692778)
chr3 (339-467)||(39775713-39775841)
chr3 (339-546)||(14438601-14438808)
chr3 (306-465)||(28125064-28125224)
chr3 (339-485)||(29715624-29715770)
chr3 (339-467)||(3657225-3657353)
chr3 (339-545)||(29350220-29350426)
chr3 (339-519)||(8069660-8069839)
chr3 (339-519)||(8883150-8883330)
chr3 (340-540)||(55431296-55431496)
chr3 (339-518)||(49971358-49971537)
chr3 (291-392)||(25726853-25726953)
chr3 (332-401)||(27708851-27708920)
chr3 (382-545)||(27708959-27709122)
chr3 (339-465)||(12965860-12965986)
chr3 (389-545)||(23661371-23661527)
chr3 (461-545)||(46964117-46964201)
chr3 (339-505)||(18471988-18472153)
chr3 (336-505)||(12971580-12971749)
chr3 (339-519)||(8887910-8888090)
chr3 (379-465)||(16013729-16013816)
chr3 (385-433)||(20507679-20507727)
chr3 (381-513)||(32474619-32474751)
[»] chr2 (28 HSPs)
chr2 (295-545)||(19578322-19578571)
chr2 (339-467)||(30650911-30651039)
chr2 (339-519)||(30658245-30658425)
chr2 (339-518)||(29677363-29677542)
chr2 (339-545)||(1934900-1935106)
chr2 (339-519)||(10160658-10160837)
chr2 (339-467)||(25478282-25478410)
chr2 (339-546)||(25497232-25497438)
chr2 (339-518)||(31326721-31326899)
chr2 (339-545)||(9180631-9180837)
chr2 (294-545)||(17545205-17545457)
chr2 (339-545)||(9189710-9189916)
chr2 (339-545)||(12796907-12797113)
chr2 (339-467)||(40847580-40847708)
chr2 (339-546)||(29677749-29677956)
chr2 (339-467)||(42926744-42926874)
chr2 (339-505)||(7737798-7737964)
chr2 (306-416)||(20711394-20711504)
chr2 (339-432)||(18344413-18344506)
chr2 (339-432)||(28603280-28603373)
chr2 (339-467)||(19892451-19892579)
chr2 (312-432)||(21523740-21523859)
chr2 (339-467)||(35638982-35639110)
chr2 (339-442)||(35601904-35602007)
chr2 (339-518)||(19094428-19094608)
chr2 (358-432)||(42914644-42914717)
chr2 (379-432)||(14104613-14104665)
chr2 (408-484)||(13291508-13291584)
[»] chr5 (33 HSPs)
chr5 (339-467)||(29167958-29168086)
chr5 (339-505)||(556677-556843)
chr5 (339-505)||(561449-561615)
chr5 (339-515)||(12103007-12103183)
chr5 (339-455)||(26667254-26667370)
chr5 (339-455)||(26938851-26938967)
chr5 (339-519)||(36942198-36942378)
chr5 (339-503)||(41587109-41587273)
chr5 (292-466)||(16116235-16116410)
chr5 (336-501)||(39518389-39518554)
chr5 (336-501)||(39523028-39523193)
chr5 (339-519)||(3665914-3666094)
chr5 (339-539)||(10759734-10759932)
chr5 (339-519)||(36937444-36937624)
chr5 (341-540)||(6514513-6514712)
chr5 (339-450)||(36423619-36423730)
chr5 (339-505)||(7451740-7451906)
chr5 (340-467)||(12041917-12042046)
chr5 (353-519)||(32461482-32461648)
chr5 (339-467)||(41996647-41996775)
chr5 (339-467)||(42001416-42001544)
chr5 (291-442)||(15414891-15415042)
chr5 (379-545)||(35679783-35679948)
chr5 (339-545)||(37248703-37248908)
chr5 (339-519)||(12045072-12045252)
chr5 (339-467)||(36428691-36428819)
chr5 (340-467)||(12501884-12502011)
chr5 (336-454)||(40147874-40147992)
chr5 (339-432)||(37652850-37652943)
chr5 (339-467)||(12102816-12102944)
chr5 (339-505)||(6155366-6155532)
chr5 (344-546)||(20180969-20181171)
chr5 (310-413)||(9911106-9911209)
[»] scaffold0182 (1 HSPs)
scaffold0182 (339-505)||(9834-10000)
[»] chr1 (24 HSPs)
chr1 (336-518)||(19798947-19799129)
chr1 (324-465)||(11806326-11806467)
chr1 (336-518)||(33301114-33301296)
chr1 (339-545)||(38620675-38620880)
chr1 (312-432)||(12259951-12260071)
chr1 (339-467)||(51041448-51041574)
chr1 (339-545)||(16649520-16649725)
chr1 (339-509)||(40165962-40166132)
chr1 (339-432)||(23192837-23192930)
chr1 (339-467)||(26927707-26927835)
chr1 (347-467)||(47451210-47451330)
chr1 (339-430)||(3094096-3094187)
chr1 (326-458)||(8900223-8900355)
chr1 (339-455)||(18784546-18784661)
chr1 (339-415)||(25855153-25855229)
chr1 (408-518)||(8137990-8138100)
chr1 (339-432)||(10135438-10135531)
chr1 (339-432)||(10140071-10140164)
chr1 (379-416)||(33380956-33380993)
chr1 (341-400)||(16832085-16832144)
chr1 (339-442)||(47455396-47455499)
chr1 (379-432)||(2493838-2493890)
chr1 (324-465)||(16035575-16035716)
chr1 (339-416)||(39588403-39588480)
[»] scaffold0057 (1 HSPs)
scaffold0057 (340-512)||(35617-35789)
[»] scaffold0002 (1 HSPs)
scaffold0002 (339-467)||(4056-4184)
[»] scaffold0008 (1 HSPs)
scaffold0008 (305-518)||(255765-255978)
[»] scaffold0240 (1 HSPs)
scaffold0240 (291-386)||(3924-4020)
[»] scaffold0045 (1 HSPs)
scaffold0045 (339-519)||(83048-83228)
[»] scaffold0097 (1 HSPs)
scaffold0097 (306-416)||(15233-15343)
[»] scaffold0128 (1 HSPs)
scaffold0128 (379-467)||(13294-13382)
[»] scaffold2020 (1 HSPs)
scaffold2020 (305-467)||(317-481)
[»] scaffold0009 (1 HSPs)
scaffold0009 (305-467)||(165014-165178)
[»] scaffold0054 (1 HSPs)
scaffold0054 (336-546)||(25378-25588)
[»] scaffold0012 (1 HSPs)
scaffold0012 (339-442)||(166096-166199)


Alignment Details
Target: chr7 (Bit Score: 384; Significance: 0; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 15 - 509
Target Start/End: Original strand, 29150592 - 29151086
Alignment:
Q  15 ggacatcaac-gaactttaattaaatttttgctcattcaataataagattgatctctcgtaacaaatatttctacatattcacggatgaaattaagaagc 113  Q
    |||||||||| |||| |||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  29150592 ggacatcaaccgaaccttaactaaatttttgctcattcaacaataagattgatctctcgcaacaaatatttctacatattcacgaatgaaattaagaagc 29150691  T
Q  114 tccaaatatctatcacttatgccacattcttttggtaagtgtattatcatttttatttttgaaacaacaaagacagtgctttacactatttccttttcgt 213  Q
    | ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |    
T  29150692 ttcaaatatctatcacttatgccacgttcatttggtaagtgtattatcatttttatttttgaaacaacaaag-cagtgctttacactatttctttttcat 29150790  T
Q  214 tgctggcttgctgccaaccattgcttcgtctccttggccggttgtggcctatggagctccaagccttaacaataccgattgttgtttttgaatttccaaa 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||    
T  29150791 tgctggcttgctgccaaccattgcttcgtctccttggccggttgtggcctatggagctccaagccttaaaaataccgattgttgtttttggattttcaaa 29150890  T
Q  314 ttctattttgaaaaagaatatatatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgc 413  Q
    |||||||||||||||||||||||| |||||||||||||| ||| |||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||    
T  29150891 ttctattttgaaaaagaatatataccgaagttgttactaggttgagtcacgaccagatcgctctttttaagacgtttcgtgacactgctcaaaattgtgc 29150990  T
Q  414 aaggtaaactatcaaccacatcgcctccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagattta 509  Q
    |||| |||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  29150991 aaggcaaactatcaaccacgtcgcctccaagataaaataagttcagctacaactacgcgcttaacttttgcattatagaagaccgtttgagattta 29151086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 305 - 518
Target Start/End: Original strand, 4579453 - 4579669
Alignment:
Q  305 atttccaaattctattttgaaaaagaat----atatatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactg 400  Q
    |||||||||| ||||||||||||| |||    || ||||||||||||||||| ||| |||||||||| | ||| ||| |||||||||||||||| |||||    
T  4579453 atttccaaat-ctattttgaaaaataattttcatctatcgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactg 4579551  T
Q  401 ctctaaattgtgcaaggtaaactatcaaccacatcgcctccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgtt 500  Q
    | | ||||||||||||| | ||||||||||||  ||||||||  |||||| |||| || ||||||||  ||| ||||||  |||| | ||||| ||||||    
T  4579552 cccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaacaagtccagctacaactgtgcgattaactactgcactgtagaaaaccgtt 4579651  T
Q  501 cgagatttataccctcaa 518  Q
    | ||| ||| ||||||||    
T  4579652 caagaattacaccctcaa 4579669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 340 - 540
Target Start/End: Original strand, 27238225 - 27238425
Alignment:
Q  340 gaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcct 439  Q
    ||||||||||||| ||| |||||||||| | ||| ||| |||||||||||| ||| |||||||| |||||||| |||| | |||||||| |||  |||||    
T  27238225 gaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgttttgtggcactgctcaaaattgtgtaaggcagactatcaatcacgccgcct 27238324  T
Q  440 ccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaaccactct 539  Q
     ||| |||||| |||| || |||||||| || ||||||||  |||| | ||||| | ||||||||||||| |||||||| | ||||| ||| ||||||||    
T  27238325 gcaagataaaacaagtccagctacaactgcgtgcttaactactgcactgtagaaaatcgttcgagatttacaccctcaaatatgatactaagaccactct 27238424  T
Q  540 t 540  Q
    |    
T  27238425 t 27238425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 310 - 519
Target Start/End: Complemental strand, 25543504 - 25543295
Alignment:
Q  310 caaattctattttgaaaaagaatatatatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaatt 409  Q
    ||||||||||||| ||| | ||||| ||||||||||||||||| ||| |||||| | | | |||  || ||||||||||||||||  |||||   |||||    
T  25543504 caaattctattttaaaagacaatatttatcgaagttgttactaggttgagtcacaatcaggtcgcactctttaagacgtttcgtggtactgcctaaaatt 25543405  T
Q  410 gtgcaaggtaaactatcaaccacatcgcctccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagattta 509  Q
    ||||||| |||||||||||||||||||||||||  |||||| ||||  | ||||||||  ||| ||||||  |||| | ||||| ||||||||||| |||    
T  25543404 gtgcaagataaactatcaaccacatcgcctccaggataaaacaagtctagctacaactgtgcggttaactactgcactgtagaaaaccgttcgagaatta 25543305  T
Q  510 taccctcaat 519  Q
     ||| |||||    
T  25543304 caccttcaat 25543295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 339 - 517
Target Start/End: Original strand, 4930215 - 4930393
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| ||| |||||||||||||||| |||||| | |||||||| |||  | ||||||||||||  ||||    
T  4930215 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgtaagtcatactatcaaccacgccgcc 4930314  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctca 517  Q
    ||||  |||||| |||  |||||||||||  ||| ||||||  |||| | ||||| ||||||||||| ||| |||||||    
T  4930315 tccaggataaaacaagcccaactacaactgtgcggttaactactgcactgtagaaaaccgttcgagaattacaccctca 4930393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 293 - 390
Target Start/End: Complemental strand, 10388524 - 10388427
Alignment:
Q  293 tgttgtttttgaatttccaaattctattttgaaaaagaatatatatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgttt 390  Q
    |||||| |||| |||||||||||||||||||||||||||||| || |||||||||||||| ||| |||||||||| | ||| ||| ||||||||||||    
T  10388524 tgttgtatttggatttccaaattctattttgaaaaagaatatctaccgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgttt 10388427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 342 - 467
Target Start/End: Complemental strand, 13314346 - 13314221
Alignment:
Q  342 agttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcctcc 441  Q
    ||||||||||| ||| |||||||||| ||||| ||| ||||||||||||||||  ||||| | ||||||||||||||| ||||||| |||| ||||||||    
T  13314346 agttgttactaggttgagtcacgaccagatcgctctctttaagacgtttcgtggtactgcccaaaattgtgcaaggtagactatcagccacgtcgcctcc 13314247  T
Q  442 aaaataaaataagttcaactacaact 467  Q
    |  |||||| ||| ||| ||||||||    
T  13314246 aggataaaacaagctcagctacaact 13314221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 341 - 545
Target Start/End: Complemental strand, 44423248 - 44423044
Alignment:
Q  341 aagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcctc 440  Q
    |||||||||||| ||| |||||||| | ||||| ||| |||||||||||||||| |||||  | ||||||| ||||| | ||||||||| ||  ||||||    
T  44423248 aagttgttactaggttgagtcacgatcagatcgctctctttaagacgtttcgtggcactgaccaaaattgttcaaggcagactatcaactacgccgcctc 44423149  T
Q  441 caaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaaccactctt 540  Q
    ||  |||||| |||| || ||||||||  ||| ||||||  |||| | ||||| ||||||||||| ||| |||||||| | || || ||| |||||||||    
T  44423148 caggataaaacaagtccatctacaactgtgcggttaactactgcactgtagaaaaccgttcgagaattacaccctcaaatatggtactaagaccactctt 44423049  T
Q  541 caata 545  Q
     ||||    
T  44423048 taata 44423044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 339 - 467
Target Start/End: Original strand, 26341181 - 26341309
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| ||| |||||||| ||||||| |||||| | ||||||||||||| | ||||||||||||  ||||    
T  26341181 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacatttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcc 26341280  T
Q  439 tccaaaataaaataagttcaactacaact 467  Q
    ||||  |||||| |||| || ||||||||    
T  26341281 tccaggataaaacaagtccagctacaact 26341309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 339 - 519
Target Start/End: Complemental strand, 44510790 - 44510610
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| ||| | ||| |||||||||||| ||| |||||  | ||||||||||||  | ||||||||||||  ||||    
T  44510790 cgaagttgttactaggttgagtcacgaccagattgctctctttaagacgttttgtggcactgtccaaaattgtgcaagacagactatcaaccacgccgcc 44510691  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaat 519  Q
    ||||  |||||| ||| ||| || |||||  ||| ||||||| |||| | ||||| ||||||||||| ||| ||| |||||    
T  44510690 tccaggataaaacaagctcagctgcaactgtgcggttaacttctgcactgtagaaaaccgttcgagaattacaccttcaat 44510610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 339 - 518
Target Start/End: Complemental strand, 23247046 - 23246867
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    ||||||||||||||  || |||||||||| | ||| ||| ||||||| |||||||| |||||| | ||||||||||||| | ||||||||||||  ||||    
T  23247046 cgaagttgttactagattgagtcacgaccaggtcgctctctttaagatgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcc 23246947  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaa 518  Q
    ||||  |||||| ||| ||| ||||||||  ||| ||||||  ||  |||||||| ||||||| | | ||| ||||||||    
T  23246946 tccaggataaaacaagctcacctacaactgtgcgattaactactgttttatagaaaaccgttccaaaattacaccctcaa 23246867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 300 - 509
Target Start/End: Original strand, 21671138 - 21671347
Alignment:
Q  300 tttgaatttccaaattctattttgaaaaagaatatatatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacact 399  Q
    |||| |||||||||||||||||||||| ||||||| |   ||||||||||||| ||| |||||||||  |  |  ||| ||||||| |||| ||| ||||    
T  21671138 tttggatttccaaattctattttgaaatagaatatctgctgaagttgttactaggttgagtcacgactaggaccctctctttaagaagtttagtggcact 21671237  T
Q  400 gctctaaattgtgcaaggtaaactatcaaccacatcgcctccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgt 499  Q
    || | || |||||||||| | || |||||| || |||| |||| ||||||| ||| ||| ||||||||  ||| ||||||  |||| | ||||| | |||    
T  21671238 gcccaaagttgtgcaaggcagacaatcaacaacttcgcatccagaataaaacaagctcacctacaactgtgcggttaactactgcagtgtagaaaatcgt 21671337  T
Q  500 tcgagattta 509  Q
    ||||||||||    
T  21671338 tcgagattta 21671347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 339 - 455
Target Start/End: Complemental strand, 9651080 - 9650964
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| ||| |||||||||||||||| |||||| | ||||||||||||  | ||||||||||||  ||||    
T  9651080 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgcc 9650981  T
Q  439 tccaaaataaaataagt 455  Q
    ||||  |||||| ||||    
T  9650980 tccaggataaaacaagt 9650964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 295 - 432
Target Start/End: Complemental strand, 3357790 - 3357652
Alignment:
Q  295 ttgtttttgaatttccaaattctatttt-gaaaaagaatatatatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgt 393  Q
    |||| |||| ||||||||||||| |||| |||||| ||||| || |||||||||||||| ||| |||||||||| | ||| ||| ||||||||||||||     
T  3357790 ttgtatttggatttccaaattctttttttgaaaaataatatctaccgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcgc 3357691  T
Q  394 gacactgctctaaattgtgcaaggtaaactatcaaccac 432  Q
    |  || || | || |||||||||| | ||||||||||||    
T  3357690 ggtacagcccaaagttgtgcaaggcagactatcaaccac 3357652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 300 - 442
Target Start/End: Original strand, 15642177 - 15642319
Alignment:
Q  300 tttgaatttccaaattctattttgaaaaagaatatatatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacact 399  Q
    |||| |||| ||||||||||||||||||||||||| || ||||||||||||    ||  ||||||| | | ||| ||||||||||||||||| |||||||    
T  15642177 tttggattttcaaattctattttgaaaaagaatatctaccgaagttgttacagaattgtgtcacgatcaggtcgctctttttaagacgtttcatgacact 15642276  T
Q  400 gctctaaattgtgcaaggtaaactatcaaccacatcgcctcca 442  Q
       | |||||||| |||  ||||||||||| || |||||||||    
T  15642277 atccaaaattgtggaagacaaactatcaactacgtcgcctcca 15642319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 358 - 519
Target Start/End: Original strand, 23866069 - 23866230
Alignment:
Q  358 agtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcctccaaaataaaataagttc 457  Q
    |||||||||| | ||| ||| |||||||||||||||| |||||| | ||||||||||||  | ||||||||||||  ||||||||  |||||| ||| ||    
T  23866069 agtcacgaccaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgcctccaggataaaacaagctc 23866168  T
Q  458 aactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaat 519  Q
    | || |||||  ||| ||||||  |||| | ||||| ||||||||||| ||| ||| |||||    
T  23866169 agctgcaactgtgcggttaactactgcactgtagaaaaccgttcgagaattacaccttcaat 23866230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 293 - 367
Target Start/End: Complemental strand, 26287317 - 26287243
Alignment:
Q  293 tgttgtttttgaatttccaaattctattttgaaaaagaatatatatcgaagttgttactatgtttagtcacgacc 367  Q
    |||||| |||| |||||||||||||||||||||||| ||| | || |||||||||||||| ||| ||||||||||    
T  26287317 tgttgtatttggatttccaaattctattttgaaaaataatctctaccgaagttgttactaggttgagtcacgacc 26287243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 509
Target Start/End: Original strand, 12254011 - 12254231
Alignment:
Q  291 attgttgtttttgaatttccaaattctatttt-gaaaaa-gaatatatatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgt 388  Q
    |||||||| |||||||||   |||||| |||| |||||| |||||| ||||||||||||||| | ||| |||| ||||| | ||| ||| ||||||| ||    
T  12254011 attgttgtatttgaattttttaattctttttttgaaaaacgaatatctatcgaagttgttaccaggttgagtcgcgaccaggtcgctctctttaagatgt 12254110  T
Q  389 ttcgtgacactgctctaaa-ttgtgcaaggtaaactatcaaccacatcgcctccaaaataaaataagttcaactacaactacgcgcttaacttttgcatt 487  Q
    || ||| |||||| ||||| |||||||||| | |||||||| |||  ||||| ||  |||||| ||||||| ||||||||  ||| ||||||  |||  |    
T  12254111 tttgtggcactgc-ctaaagttgtgcaaggcagactatcaatcacgccgcctacaggataaaacaagttcagctacaactgtgcggttaactaatgctgt 12254209  T
Q  488 atagaagaccgttcgagattta 509  Q
     ||||| |||||| ||||||||    
T  12254210 gtagaaaaccgtttgagattta 12254231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 339 - 467
Target Start/End: Original strand, 8268275 - 8268403
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    ||||||||||||||| || |||||||||| | ||| ||| |||||||||||| ||| |||||  | ||||||||||||  | ||||||||||||  | ||    
T  8268275 cgaagttgttactatattgagtcacgaccaggtcgctctctttaagacgttttgtggcactgtccaaaattgtgcaagacagactatcaaccacgccacc 8268374  T
Q  439 tccaaaataaaataagttcaactacaact 467  Q
    ||||  |||||| |||| || ||||||||    
T  8268375 tccatgataaaacaagtccagctacaact 8268403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 432
Target Start/End: Original strand, 8076033 - 8076125
Alignment:
Q  340 gaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccac 432  Q
    ||||||||||||  ||| |||||||||| | ||| ||| |||||||||||||||| ||||||   ||||||||||||  | ||||||||||||    
T  8076033 gaagttgttactgggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgcctaaaattgtgcaagacagactatcaaccac 8076125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 405 - 545
Target Start/End: Original strand, 12799458 - 12799598
Alignment:
Q  405 aaattgtgcaaggtaaactatcaaccacatcgcctccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgag 504  Q
    ||||||||||||| | ||||||||||||  | | ||||  ||||||||||| || ||||||||  ||| ||||||  ||||||  |||| ||||||||||    
T  12799458 aaattgtgcaaggcagactatcaaccacgccacatccaggataaaataagtccagctacaactgtgcggttaactactgcattgcagaaaaccgttcgag 12799557  T
Q  505 atttataccctcaattgtgatattaaaaccactcttcaata 545  Q
    | ||| |||||||| | || || ||| ||||||||| ||||    
T  12799558 aattacaccctcaaatatggtactaagaccactctttaata 12799598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 341 - 540
Target Start/End: Original strand, 9008147 - 9008345
Alignment:
Q  341 aagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcctc 440  Q
    |||||||||||| ||| ||||||||||   ||  ||| |||||||||||| |||||||| ||| ||||||||||||| |  ||||||| ||    |||||    
T  9008147 aagttgttactaggttgagtcacgaccatgtccctctctttaagacgtttagtgacactactcaaaattgtgcaaggcaggctatcaatcatgaagcctc 9008246  T
Q  441 caaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaaccactctt 540  Q
    ||  |||||| |||| |||||||||||  | | ||||||  |||| | ||||| | ||||||||| ||| ||| |||| | ||||| ||||| |||||||    
T  9008247 caggataaaacaagtccaactacaactgtgtgattaactactgcactgtagaaaatcgttcgagaattacaccttcaa-tatgatactaaaatcactctt 9008345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 415
Target Start/End: Original strand, 30256836 - 30256912
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaa 415  Q
    ||||||| |||| | ||| |||||||||| ||||| | |||||||||| ||||||| |||||| | |||||||||||    
T  30256836 cgaagtttttacaaggttgagtcacgaccagatcgctgtttttaagacatttcgtggcactgcccaaaattgtgcaa 30256912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 292 - 332
Target Start/End: Original strand, 23317930 - 23317970
Alignment:
Q  292 ttgttgtttttgaatttccaaattctattttgaaaaagaat 332  Q
    |||||| ||||| ||||||||||||||||||||||| ||||    
T  23317930 ttgttggttttggatttccaaattctattttgaaaaggaat 23317970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 7e-35; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 339 - 518
Target Start/End: Original strand, 51697899 - 51698077
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||| | ||||||||||||  ||||    
T  51697899 cgaagttgttactaggttgagtcacgaccagatcgctctttttaagacgtttcatgacactgctcaaaattgtgcaaggcagactatcaaccacgccgcc 51697998  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaa 518  Q
    ||||  |||||| ||| |||||||||| |  ||| ||||| | |||| | ||||| ||||||||||| ||| ||||||||    
T  51697999 tccaggataaaacaagctcaactacaattgtgcggttaac-tatgcactgtagaaaaccgttcgagaattacaccctcaa 51698077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 339 - 545
Target Start/End: Complemental strand, 37259990 - 37259784
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| | | |||||||||||||||| |||| ||| ||||||||||||| | ||||||||||||  ||||    
T  37259990 cgaagttgttactaggttgagtcacgaccaggtcgctttctttaagacgtttcgtggcactactcaaaattgtgcaaggcagactatcaaccacgccgcc 37259891  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaaccactc 538  Q
    ||||  |||||| |||  || ||||||||  ||| ||||||  |||| | ||||| ||||||||||| ||| |||||||| | || || ||| |||||||    
T  37259890 tccaggataaaacaagcccagctacaactgtgcggttaactactgcactgtagaaaaccgttcgagaattacaccctcaaatatggtactaagaccactc 37259791  T
Q  539 ttcaata 545  Q
    || ||||    
T  37259790 tttaata 37259784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 336 - 545
Target Start/End: Original strand, 19101956 - 19102165
Alignment:
Q  336 tatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatc 435  Q
    |||| |||||||||||| ||| |||||||||  | ||  ||| |||||||||||||||| |||| ||| |||||||||||   | |||||||||||| ||    
T  19101956 tatcaaagttgttactaggttaagtcacgacgaggtcactctgtttaagacgtttcgtggcactactcaaaattgtgcaaaacagactatcaaccacgtc 19102055  T
Q  436 gcctccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaacca 535  Q
    |||||||  |||||| |||| |||||||||||  ||| ||||||  |||| | ||||| ||||||||||| ||| |||||||| | || || ||| ||||    
T  19102056 gcctccaggataaaacaagtccaactacaactgtgcggttaactactgcactgtagaaaaccgttcgagaattacaccctcaaatatggtactaagacca 19102155  T
Q  536 ctcttcaata 545  Q
    ||||| ||||    
T  19102156 ctctttaata 19102165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 336 - 545
Target Start/End: Complemental strand, 37264680 - 37264471
Alignment:
Q  336 tatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatc 435  Q
    ||||||||||||||||| ||| |||||||||| | ||| ||| |||||||||||||||| |||||| | ||||| ||||||| | ||||||||||||  |    
T  37264680 tatcgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgcccaaaattatgcaaggcagactatcaaccacgcc 37264581  T
Q  436 gcctccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaacca 535  Q
    |||||||  |||||| |||  || |||||| |  ||| ||||||  |||| | ||||| ||||||||||| ||| |||||||| | || || ||| ||||    
T  37264580 gcctccaggataaaacaagcccagctacaattgtgcggttaactactgcactgtagaaaaccgttcgagaattacaccctcaaatatggtactaagacca 37264481  T
Q  536 ctcttcaata 545  Q
    ||||| ||||    
T  37264480 ctctttaata 37264471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 337 - 518
Target Start/End: Complemental strand, 42758870 - 42758689
Alignment:
Q  337 atcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcg 436  Q
    |||||||||||||||| ||| |||||||||| | ||| ||| ||||||| |||||||| |||||| | ||||||||||||  | |||||||||||| |||    
T  42758870 atcgaagttgttactaggttgagtcacgaccaggtcgctctctttaagatgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgtcg 42758771  T
Q  437 cctccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaa 518  Q
    |||||| |||||||  ||| |||  ||||||  ||| ||||||  |||| | ||||| ||||||||||| ||| ||||||||    
T  42758770 cctccagaataaaactagtccaaaaacaactgtgcgattaactactgcactgtagaaaaccgttcgagaattacaccctcaa 42758689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 309 - 467
Target Start/End: Original strand, 12878191 - 12878349
Alignment:
Q  309 ccaaattctattttgaaaaagaatatatatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaat 408  Q
    |||||||||||||||| | ||||||| ||  ||||||||||||| ||| |||||||| | | ||| ||| |||||||||||||||||||||  || ||||    
T  12878191 ccaaattctattttgatagagaatatctacggaagttgttactaggttgagtcacgatcaggtcgctctctttaagacgtttcgtgacacttttcaaaat 12878290  T
Q  409 tgtgcaaggtaaactatcaaccacatcgcctccaaaataaaataagttcaactacaact 467  Q
    ||||||| | | |||||||| |||  | |||||| ||||||| ||||||| ||||||||    
T  12878291 tgtgcaaagcagactatcaatcacgccacctccagaataaaacaagttcagctacaact 12878349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 339 - 545
Target Start/End: Original strand, 31269016 - 31269222
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| ||| |||||||||||||||| ||||||   ||||||||||||| | ||||||||||||  ||||    
T  31269016 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgcctaaaattgtgcaaggcagactatcaaccacgccgcc 31269115  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaaccactc 538  Q
    ||||  |||||| |||| || |||||||   | | ||||||  |||| | ||||| ||||||||||| ||| |||||||| | || || ||| |||||||    
T  31269116 tccaggataaaacaagtccagctacaaccgtgtggttaactactgcactgtagaaaaccgttcgagaattacaccctcaaatatggtactaagaccactc 31269215  T
Q  539 ttcaata 545  Q
    || ||||    
T  31269216 tttaata 31269222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 339 - 545
Target Start/End: Original strand, 31273503 - 31273709
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| ||| |||||||||||||||| |||||| | ||||||||||||  | ||||||||||||  ||||    
T  31273503 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgcc 31273602  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaaccactc 538  Q
    ||||  |||||| |||  || ||||||||  | | ||||||  |||| | ||||| ||||||||||| ||| |||||||| | || || ||| |||||||    
T  31273603 tccaggataaaacaagcccagctacaactgtgtggttaactactgcactgtagaaaaccgttcgagaattacaccctcaaatatggtactaagaccactc 31273702  T
Q  539 ttcaata 545  Q
    || ||||    
T  31273703 tttaata 31273709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 339 - 467
Target Start/End: Complemental strand, 5271532 - 5271404
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| ||| |||||||||||||||| |||||| | ||||||||||||  | ||||||||||||  ||||    
T  5271532 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgcc 5271433  T
Q  439 tccaaaataaaataagttcaactacaact 467  Q
    ||||  |||||| |||| |||||||||||    
T  5271432 tccaggataaaacaagtccaactacaact 5271404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 336 - 518
Target Start/End: Original strand, 2819823 - 2820005
Alignment:
Q  336 tatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatc 435  Q
    |||||||||||||||||  || |||||||||| | ||||| | ||||||| ||||||||  ||||  | ||||||||||||||| |||||| ||||   |    
T  2819823 tatcgaagttgttactagattgagtcacgaccaggtcgttttctttaagatgtttcgtggtactgtccaaaattgtgcaaggtagactatctaccatgcc 2819922  T
Q  436 gcctccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaa 518  Q
    || ||||  |||||| ||||| | ||||||||| ||  |||||| ||||| ||||||| | ||||||||||||| ||||||||    
T  2819923 gcgtccaggataaaacaagtttagctacaactatgcaattaactgttgcactatagaaaatcgttcgagatttacaccctcaa 2820005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 293 - 363
Target Start/End: Original strand, 23093128 - 23093198
Alignment:
Q  293 tgttgtttttgaatttccaaattctattttgaaaaagaatatatatcgaagttgttactatgtttagtcac 363  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  23093128 tgttgtatttggatttccaaattctattttgaaaaagaatatatatcgaagttgttactaagttgagtcac 23093198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 339 - 507
Target Start/End: Original strand, 13059392 - 13059560
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    ||||||| |||||| ||| ||||| |||| ||||| ||| |||||||||||||||| ||||||   ||||||||||||  | ||||||||||||  ||||    
T  13059392 cgaagttattactaggttgagtcatgaccagatcgctctctttaagacgtttcgtggcactgcataaaattgtgcaagacagactatcaaccactccgcc 13059491  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatt 507  Q
    || | ||||||| ||| ||| ||||||||  | | ||||||  |||||| ||||| |||||||||||||    
T  13059492 tctagaataaaacaagctcagctacaactgtgtggttaactactgcattgtagaaaaccgttcgagatt 13059560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 339 - 455
Target Start/End: Complemental strand, 13522105 - 13521989
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| ||| |||||||||||||||| |||||| | ||||||||||||  | ||||||||||||  ||||    
T  13522105 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgcc 13522006  T
Q  439 tccaaaataaaataagt 455  Q
    ||||  |||||| ||||    
T  13522005 tccaggataaaacaagt 13521989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 339 - 467
Target Start/End: Original strand, 31765868 - 31765996
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||| ||| | ||  ||| |||||||||||||||| |||||| | ||||||||||||| | ||||||||||||  ||||    
T  31765868 cgaagttgttactaggttgagtcacaaccaggtcactctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcc 31765967  T
Q  439 tccaaaataaaataagttcaactacaact 467  Q
    ||||  |||||| |||| || ||||||||    
T  31765968 tccaggataaaacaagtccagctacaact 31765996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 339 - 442
Target Start/End: Complemental strand, 5928332 - 5928229
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||| | ||| |||||||||| | ||| ||| ||||||| |||| ||| |||||||| ||||||||||||| | ||||||||||||| ||||    
T  5928332 cgaagttgttaccaggttgagtcacgaccaggtcgctctctttaagatgtttagtggcactgctcaaaattgtgcaaggcagactatcaaccacaccgcc 5928233  T
Q  439 tcca 442  Q
    ||||    
T  5928232 tcca 5928229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 339 - 546
Target Start/End: Original strand, 16421011 - 16421218
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| |||  ||||||| ||||||| |||||| | ||||||||||||| | ||||||||||||  ||||    
T  16421011 cgaagttgttactaggttgagtcacgaccaggtcgctctcattaagacatttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcc 16421110  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaaccactc 538  Q
    | ||  |||||| |||  || ||||||||  ||| ||||||  |||| | ||||| ||||| ||||||||| ||| || | | || || ||| |||||||    
T  16421111 tacaggataaaacaagcccagctacaactgtgcggttaactactgcactgtagaaaaccgtccgagatttacaccttcgaatatggtactaagaccactc 16421210  T
Q  539 ttcaatat 546  Q
    || |||||    
T  16421211 tttaatat 16421218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 336 - 519
Target Start/End: Complemental strand, 33463472 - 33463289
Alignment:
Q  336 tatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatc 435  Q
    ||||||||||||||||| ||| |||||||||| | ||| ||| |||||||||||||||| |||||  | || |||||||||| | | | |||||| |  |    
T  33463472 tatcgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgtccaaagttgtgcaaggcagattgtcaaccccgcc 33463373  T
Q  436 gcctccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaat 519  Q
    |||||||  |||||| |||  |||||||||||   || ||||||  |||||| ||||| ||||||||||| ||| ||| |||||    
T  33463372 gcctccaggataaaacaagcacaactacaactgttcgattaactactgcattgtagaaaaccgttcgagaattacaccttcaat 33463289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 340 - 509
Target Start/End: Original strand, 55251703 - 55251871
Alignment:
Q  340 gaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcct 439  Q
    ||||||||||||| ||| |||||||||| | ||| |||||| ||||||||||||| |||||  | ||||||||||||  | ||||||||||||  | |||    
T  55251703 gaagttgttactaggttgagtcacgaccaggtcgctctttt-aagacgtttcgtggcactgtccaaaattgtgcaagacagactatcaaccacgccacct 55251801  T
Q  440 ccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagattta 509  Q
    |||  |||||| |||  |||||||||||   || ||||||  |||| | ||||| |||||||||||||||    
T  55251802 ccaggataaaacaagcccaactacaactgtacggttaactactgcactgtagaaaaccgttcgagattta 55251871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 291 - 518
Target Start/End: Original strand, 4550932 - 4551158
Alignment:
Q  291 attgttgtttttgaatttccaaattctattttgaaaaagaatatatatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgttt 390  Q
    |||||||| |||| |||| ||||||||||||||||||  ||||| ||||||||||||||||| ||| ||||| ||   | ||||||  |||||||| |||    
T  4550932 attgttgtatttggattttcaaattctattttgaaaagtaatatctatcgaagttgttactaggttgagtcatgattaggtcgttc-atttaagacattt 4551030  T
Q  391 cgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcctccaaaataaaataagttcaactacaactacgcgcttaacttttgcattata 490  Q
      || |||||||| || |||||||||  | ||||||||| ||  ||||||||  |||||| ||  |||| |||||||  ||| ||||||  |||| | ||    
T  4551031 tatgccactgctcaaagttgtgcaagacagactatcaactacgccgcctccaggataaaacaaactcaattacaactctgcgattaactactgcactgta 4551130  T
Q  491 gaagaccgttcgagatttataccctcaa 518  Q
    ||| ||||||  ||||||| ||| ||||    
T  4551131 gaaaaccgtttaagatttacaccatcaa 4551158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 336 - 467
Target Start/End: Original strand, 8693690 - 8693821
Alignment:
Q  336 tatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatc 435  Q
    ||||||||||||||||| ||| |||||||||| | ||| ||| |||||||||||||||| | || | | ||||||||||||  | ||||||||||||  |    
T  8693690 tatcgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcgctacccaaaattgtgcaagacatactatcaaccacgcc 8693789  T
Q  436 gcctccaaaataaaataagttcaactacaact 467  Q
    ||||| |  |||||| ||| ||| ||||||||    
T  8693790 gcctcaaggataaaacaagctcagctacaact 8693821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 339 - 509
Target Start/End: Complemental strand, 32082203 - 32082034
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| ||||  |||||||||||| |||| || |||||  | |||||||||||||  |||||||||||||  ||||    
T  32082203 cgaagttgttactaggttgagtcacgaccagatcactctttttaagacatttcatggcactgtccaaaattgtgcaagg-caactatcaaccacgccgcc 32082105  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagattta 509  Q
    ||||  |||||| ||| |||  ||||| |  ||| ||||||  |||| | ||||| ||| |||||||||||    
T  32082104 tccaggataaaacaagctcagttacaattgtgcggttaactactgcagtgtagaaaaccattcgagattta 32082034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 336 - 545
Target Start/End: Original strand, 47244227 - 47244436
Alignment:
Q  336 tatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatc 435  Q
    |||||||||||||| || ||| |||||||| | | |||  || |||||||||||||||| ||||| || ||||| |  |||  | ||||||||||||  |    
T  47244227 tatcgaagttgttagtaggttgagtcacgatcaggtcgccctctttaagacgtttcgtggcactgttcaaaattattgaagaaagactatcaaccacgcc 47244326  T
Q  436 gcctccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaacca 535  Q
    |||||||  |||||| |||  |||||||||||  ||| ||||||  |||| | ||||| ||||||||||| ||| |||| ||| | || || ||| ||||    
T  47244327 gcctccaggataaaacaagcacaactacaactgtgcggttaactactgcactgtagaaaaccgttcgagaattaaacccccaaatatggtactaagacca 47244426  T
Q  536 ctcttcaata 545  Q
    ||||| ||||    
T  47244427 ctctttaata 47244436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 339 - 455
Target Start/End: Complemental strand, 12824008 - 12823892
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    ||||||||||| || ||| ||||| |||| | ||| ||| |||||||| ||||||| |||||| | ||||||||||||  ||||||||||||||  ||||    
T  12824008 cgaagttgttattaggttgagtcatgaccaggtcgctctctttaagacatttcgtggcactgcccaaaattgtgcaagacaaactatcaaccacgccgcc 12823909  T
Q  439 tccaaaataaaataagt 455  Q
    ||||  |||||| ||||    
T  12823908 tccaggataaaacaagt 12823892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 339 - 450
Target Start/End: Original strand, 19106601 - 19106712
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||| | | ||||| | | ||||||||||||| |  |||||| | |||||||||||||   |||||||||||| |||||    
T  19106601 cgaagttgttactaggttgagtcacaagcagatcgctttctttaagacgtttcatagcactgcccaaaattgtgcaaggctgactatcaaccacgtcgcc 19106700  T
Q  439 tccaaaataaaa 450  Q
    |||| |||||||    
T  19106701 tccagaataaaa 19106712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 379 - 545
Target Start/End: Complemental strand, 31729460 - 31729294
Alignment:
Q  379 tttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcctccaaaataaaataagttcaactacaactacgcgcttaac 478  Q
    |||||||||||||||| |||| | | ||||||||||||| | || ||||| |||  ||||||||  |||||| |||| || || |||||  ||| |||||    
T  31729460 tttaagacgtttcgtggcactacccaaaattgtgcaaggcagacaatcaatcacgccgcctccaggataaaacaagtccagctgcaactgtgcggttaac 31729361  T
Q  479 ttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaaccactcttcaata 545  Q
    |  |||| | ||||| ||||||||||| ||| |||||||| | || || ||| ||||||||| ||||    
T  31729360 tactgcactgtagaaaaccgttcgagaattacaccctcaaatatggtactaagaccactctttaata 31729294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 324 - 445
Target Start/End: Complemental strand, 13065896 - 13065775
Alignment:
Q  324 aaaaagaatatatatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaact 423  Q
    ||||||||||| || |||||||||||||| ||| |||||||||    ||| ||| ||||||||||||| || |||||| | || ||||| |||| | |||    
T  13065896 aaaaagaatatctaccgaagttgttactaggttgagtcacgactatgtcgctctctttaagacgtttcatggcactgcccaaagttgtgaaagggagact 13065797  T
Q  424 atcaaccacatcgcctccaaaa 445  Q
    |||||||||   ||||||||||    
T  13065796 atcaaccacgcagcctccaaaa 13065775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 465
Target Start/End: Complemental strand, 33469085 - 33468960
Alignment:
Q  340 gaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcct 439  Q
    ||||||||||||| ||| |||||||||  | ||||||| |||||||||||| ||| |||||| | || |||||||||| | ||| ||||||||  | |||    
T  33469085 gaagttgttactaggttgagtcacgactaggtcgttctctttaagacgttttgtggcactgcccaaagttgtgcaaggcagactgtcaaccacgccacct 33468986  T
Q  440 ccaaaataaaataagttcaactacaa 465  Q
    |||  |||||| ||| ||| ||||||    
T  33468985 ccatgataaaacaagctcagctacaa 33468960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 416
Target Start/End: Complemental strand, 1151463 - 1151334
Alignment:
Q  291 attgttgtttttgaatttccaaattctattttgaaaaagaat----atatatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagac 386  Q
    |||||||| ||| ||||| |||| ||||||||||||| ||||    || ||||||||||||||||| ||| |||| ||| | ||||  ||| ||||||||    
T  1151463 attgttgtatttaaattttcaaagtctattttgaaaatgaatttttatttatcgaagttgttactaggttgagtcgcgatcagatcactctctttaagac 1151364  T
Q  387 gtttcgtgacactgctctaaattgtgcaag 416  Q
    ||||| |||||||   | ||||||||||||    
T  1151363 gtttcatgacactatccaaaattgtgcaag 1151334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 442
Target Start/End: Original strand, 16953107 - 16953170
Alignment:
Q  379 tttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcctcca 442  Q
    ||||||||||||||||  ||| | | ||||||||||||| | ||||||||||||| ||||||||    
T  16953107 tttaagacgtttcgtggtactacccaaaattgtgcaaggcagactatcaaccacaacgcctcca 16953170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 427
Target Start/End: Original strand, 51696989 - 51697072
Alignment:
Q  344 ttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatca 427  Q
    ||||||||| ||| |||||||||| | ||| |||  |||||||||||| || |||||| | ||||||||||||| | |||||||    
T  51696989 ttgttactaggttgagtcacgaccaggtcgctctccttaagacgtttcatggcactgcccaaaattgtgcaaggcagactatca 51697072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 339 - 429
Target Start/End: Complemental strand, 8030589 - 8030499
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaac 429  Q
    |||||||||||||| ||| | |||| | | | ||| ||| |||||||||||| ||| |||||| | |||||||||||| || |||||||||    
T  8030589 cgaagttgttactaggttgaatcacaatcaggtcgctctctttaagacgttttgtggcactgcccaaaattgtgcaagatagactatcaac 8030499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 546
Target Start/End: Complemental strand, 19541269 - 19541067
Alignment:
Q  344 ttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcctccaa 443  Q
    ||||||||| ||| |||||||| | |||||||||||||||||  ||||||| || || |  ||||||| ||||  | ||||||||||||  |||||  |     
T  19541269 ttgttactaggttgagtcacgatcagatcgttctttttaagatatttcgtggcattgtttaaaattgtacaagacagactatcaaccacgccgcctatag 19541170  T
Q  444 aataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaaccactcttcaa 543  Q
     |||||| |||| || |||||||    || ||||||  |||||| ||||| ||||||||||| ||| |||  ||| | || || ||| ||||||||| ||    
T  19541169 gataaaacaagtccagctacaacagttcgattaactactgcattgtagaaaaccgttcgagaattacacctccaaatatggtactaagaccactctttaa 19541070  T
Q  544 tat 546  Q
    |||    
T  19541069 tat 19541067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 467
Target Start/End: Original strand, 19906233 - 19906361
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctct-aaattgtgcaaggtaaactatcaaccacatcgc 437  Q
    ||||||| ||| || ||| |||||||| | | ||| |||||||||||||||  ||||||||| ||| ||||||||||||  | |||||||||  |  |||    
T  19906233 cgaagttattattaggttgagtcacgatcaggtcgctctttttaagacgttcagtgacactg-tctaaaattgtgcaagacagactatcaactccgccgc 19906331  T
Q  438 ctccaaaataaaataagttcaactacaact 467  Q
    |||||  |||||| ||| ||||||||||||    
T  19906332 ctccaggataaaacaagctcaactacaact 19906361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 430
Target Start/End: Original strand, 24490033 - 24490105
Alignment:
Q  358 agtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaacc 430  Q
    |||||||||| ||||| ||| |||||||||||||| ||||||  || |  |||||||||||| |||| |||||    
T  24490033 agtcacgaccagatcgctctctttaagacgtttcgcgacactaatcaagtttgtgcaaggtagactaacaacc 24490105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 7e-32; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 339 - 545
Target Start/End: Complemental strand, 44926036 - 44925831
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| ||| ||||| |||||||||| |||||| | ||||||||||||| | ||||||||||||  ||||    
T  44926036 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaaaacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcc 44925937  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaaccactc 538  Q
    ||||  |||||| ||| ||| ||||||||| ||| ||||| | |||| | ||||| ||||||||||| ||| |||||||| | || || |||||||||||    
T  44925936 tccaggataaaacaaggtcatctacaactatgcggttaac-tatgcactgtagaaaaccgttcgagaattacaccctcaaatatggtactaaaaccactc 44925838  T
Q  539 ttcaata 545  Q
    || ||||    
T  44925837 tttaata 44925831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 293 - 461
Target Start/End: Complemental strand, 24673484 - 24673316
Alignment:
Q  293 tgttgtttttgaatttccaaattctattttgaaaaagaatatatatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcg 392  Q
    |||||| ||| | ||| ||||||||||||| ||| ||||||| ||||||||||||||||| ||| ||| |||| | ||||| ||||||||| ||||||||    
T  24673484 tgttgtatttaagttttcaaattctattttaaaagagaatatttatcgaagttgttactaggttgagttacgatcagatcgctctttttaaaacgtttcg 24673385  T
Q  393 tgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcctccaaaataaaataagttcaact 461  Q
    |||||||| || ||||| |||||| || ||||||| ||||| | | |||||||||||| ||| ||||||    
T  24673384 tgacactgttcaaaattatgcaagatagactatcacccacaacacttccaaaataaaacaagctcaact 24673316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 311 - 518
Target Start/End: Original strand, 24090581 - 24090783
Alignment:
Q  311 aaattctattttgaaaaagaatatatatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattg 410  Q
    ||||||| |||||||||||||||| || |||||||||||||| ||| |||||||||| | ||| ||| |||||||||||||||| |||||| | || |||    
T  24090581 aaattcttttttgaaaaagaatatctaccgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgcccaaagttg 24090680  T
Q  411 tgcaaggtaaactatcaaccacatcgcctccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttat 510  Q
    ||||||| | | |||||| ||| |||||||||| |||||| ||| | | ||||||||  ||| ||||||     ||| ||||| |||||||||||||||     
T  24090681 tgcaaggcagaatatcaatcacgtcgcctccaagataaaacaagcttatctacaactgtgcggttaact-----attgtagaaaaccgttcgagatttac 24090775  T
Q  511 accctcaa 518  Q
    | ||||||    
T  24090776 atcctcaa 24090783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 332 - 546
Target Start/End: Complemental strand, 18876486 - 18876273
Alignment:
Q  332 tatatatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaacca 431  Q
    |||||| |||||||||||||| ||| |||||||||| | ||| |||||| ||||||||||||| |||||| | ||||||||||||  | |||||||||||    
T  18876486 tatataccgaagttgttactaggttgagtcacgaccaggtcgctctttt-aagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaacca 18876388  T
Q  432 catcgcctccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaa 531  Q
    |  ||||||||  |||||| ||  ||| ||||||||  ||| ||||||  |||| | ||||| ||||||||||| ||| |||||||| | ||||| |||     
T  18876387 cgccgcctccaggataaaacaaactcatctacaactgtgcggttaactactgcactgtagaaaaccgttcgagaattacaccctcaaatatgatactaat 18876288  T
Q  532 accactcttcaatat 546  Q
    ||||||||| |||||    
T  18876287 accactctttaatat 18876273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 339 - 518
Target Start/End: Original strand, 19166616 - 19166795
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| ||||||||||   ||| ||| |||||||||||||||| |||||| | |||||||||| || | ||||||||||||  ||||    
T  19166616 cgaagttgttactaggttgagtcacgaccatgtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcacggcagactatcaaccacgccgcc 19166715  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaa 518  Q
    ||||  |||||| ||| ||||||||||||  ||  ||||||  |||| ||||||| ||||||||||| ||| ||||||||    
T  19166716 tccaggataaaacaagctcaactacaactgtgctgttaactactgcactatagaaaaccgttcgagaattacaccctcaa 19166795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 328 - 537
Target Start/End: Complemental strand, 23548756 - 23548547
Alignment:
Q  328 agaatatatatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatca 427  Q
    ||||||| || |||||||||||||| ||| |||||||||| | ||| ||| | |||||||||||||| |||||    |||||||||||||   |||||||    
T  23548756 agaatatctaccgaagttgttactaggttgagtcacgacctggtcgctctctataagacgtttcgtggcactgtgtaaaattgtgcaaggcggactatca 23548657  T
Q  428 accacatcgcctccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaattgtgatat 527  Q
    ||||| ||||||| |  |||||| ||||||| |||||||| |||| ||||||  |||||| ||||| ||||||| ||||||  ||||| || | |||||     
T  23548656 accacgtcgcctctaggataaaacaagttcagctacaactgcgcggttaactactgcattgtagaaaaccgttcaagattttcacccttaaatatgatac 23548557  T
Q  528 taaaaccact 537  Q
    ||| ||||||    
T  23548556 taagaccact 23548547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 339 - 467
Target Start/End: Complemental strand, 40125998 - 40125870
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| ||||| ||| |||||||||||||||| |||||| | ||||||||||||| | ||||||||||||  ||||    
T  40125998 cgaagttgttactaggttgagtcacgaccagatcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcc 40125899  T
Q  439 tccaaaataaaataagttcaactacaact 467  Q
    ||||| |||||| |||  || ||||||||    
T  40125898 tccaagataaaacaagcccagctacaact 40125870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 336 - 519
Target Start/End: Complemental strand, 31449982 - 31449799
Alignment:
Q  336 tatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatc 435  Q
    ||||||||||||||||| ||| |||||||||| | ||| ||| |||||||||||||||| |||||| | ||||||||||||  | ||||||||||||  |    
T  31449982 tatcgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgcc 31449883  T
Q  436 gcctccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaat 519  Q
    |||||||  |||||| |||| || || |||||  ||| ||||||  |||| | ||||| ||||||||||| ||| ||| |||||    
T  31449882 gcctccaggataaaacaagtccagctgcaactgtgcggttaactactgcactgtagaaaaccgttcgagaattacaccttcaat 31449799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 339 - 518
Target Start/End: Original strand, 33416529 - 33416707
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| ||| |||||||||||||||| |||||| | ||||||||||||  | ||||||||||||  ||||    
T  33416529 cgaagttgttactaggttgagtcacgaccaggtcggtctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgcc 33416628  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaa 518  Q
    ||||| |||||| |||  || ||||||||  ||| ||||| | |||| | ||||| ||||||||||| ||| ||||||||    
T  33416629 tccaagataaaacaagcccagctacaactgtgcggttaac-tatgcactgtagaaaaccgttcgagaattacaccctcaa 33416707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 300 - 545
Target Start/End: Original strand, 2965574 - 2965818
Alignment:
Q  300 tttgaatttccaaattctattttgaaaaagaatatatatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacact 399  Q
    ||||||||||||||||||||||||||||  |||||  | | || ||||||||| ||  |||||||||| | ||| ||| ||||| |||||||||| ||||    
T  2965574 tttgaatttccaaattctattttgaaaagaaatatccaccaaatttgttactaggtg-agtcacgaccaggtcgctctctttaaaacgtttcgtggcact 2965672  T
Q  400 gctctaaattgtgcaaggtaaactatcaaccacatcgcctccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgt 499  Q
    ||   ||||||||||||  | ||||||||||||| |||||| |  |||||| |||| || ||||||||| ||  ||||||  |||| | ||||| ||| |    
T  2965673 gcctaaaattgtgcaagacacactatcaaccacaccgcctctaggataaaacaagtccagctacaactatgcagttaactactgcactgtagaaaaccat 2965772  T
Q  500 tcgagatttataccctcaattgtgatattaaaaccactcttcaata 545  Q
    | |||||||| |||||||| | || || ||| ||||||||| ||||    
T  2965773 ttgagatttacaccctcaaatatggtactaagaccactctttaata 2965818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 339 - 518
Target Start/End: Original strand, 1807454 - 1807634
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||  | ||| ||| ||||||||||||||||||||||| | ||||||||||||| | ||||||||||||  ||||    
T  1807454 cgaagttgttactaggttgagtcacgactaggtcgctctctttaagacgtttcgtgacactgcccaaaattgtgcaaggcagactatcaaccacgccgcc 1807553  T
Q  439 tccaaaat-aaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaa 518  Q
    || |  || |||| |||| || ||||||||  ||| ||||||  |||| | ||||| ||||||||||||||| ||| ||||    
T  1807554 tctaggataaaaacaagtccagctacaactgtgcggttaactagtgcactgtagaaaaccgttcgagatttacaccttcaa 1807634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 336 - 545
Target Start/End: Complemental strand, 1911085 - 1910876
Alignment:
Q  336 tatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatc 435  Q
    |||||||||||||| || ||| |||||||| | | ||| ||| |||||||||||||||| ||||  || ||||||||||| | | ||||||||||||       
T  1911085 tatcgaagttgttattaggttaagtcacgatcaggtcgctctctttaagacgtttcgtggcactagtcaaaattgtgcaaagcagactatcaaccacgct 1910986  T
Q  436 gcctccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaacca 535  Q
    |||||||  |||||| ||| ||||||||||||  ||| ||||||  |||| | ||||| ||| ||||||||||| ||  |||| | || |||||| ||||    
T  1910985 gcctccagtataaaacaagctcaactacaactgtgcggttaactactgcactgtagaaaaccattcgagatttacacattcaaatatggtattaagacca 1910886  T
Q  536 ctcttcaata 545  Q
    ||||| ||||    
T  1910885 ctctttaata 1910876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 340 - 439
Target Start/End: Original strand, 34118449 - 34118548
Alignment:
Q  340 gaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcct 439  Q
    ||||||||||||| ||| |||||||||| | ||| ||| ||||||||||||| || |||||| | ||||||||||||| | |||||||||||| ||||||    
T  34118449 gaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcatggcactgcccaaaattgtgcaaggcagactatcaaccacgtcgcct 34118548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 336 - 518
Target Start/End: Complemental strand, 15875784 - 15875602
Alignment:
Q  336 tatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatc 435  Q
    |||||||||||||||||  || ||| |||||| | ||| ||| |||| ||||||||||| |||||| | ||||||||||||| | ||||||||||||  |    
T  15875784 tatcgaagttgttactaaattgagttacgaccaggtcgctctctttaggacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgcc 15875685  T
Q  436 gcctccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaa 518  Q
    |||||||  |||||| ||| ||| |||||| |   || ||||||  |||| ||||||| ||||||| ||| ||| || |||||    
T  15875684 gcctccaggataaaacaagctcagctacaattgtacgattaactactgcactatagaaaaccgttcaagaattacactctcaa 15875602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 339 - 505
Target Start/End: Original strand, 17025917 - 17026083
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| ||| |||||||||||||||| |||||| | | ||||||||||  | |||||||| ||| |||||    
T  17025917 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgcccaacattgtgcaagacagactatcaatcacgtcgcc 17026016  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgaga 505  Q
    ||||  |||||| ||||  | ||||||||   || ||||||  |||| | ||||| |||||||||||    
T  17026017 tccaggataaaacaagtctagctacaactgttcgattaactactgcactgtagaaaaccgttcgaga 17026083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 339 - 505
Target Start/End: Original strand, 17556409 - 17556575
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| ||| |||||||||||||||| |||||| | | ||||||||||  | |||||||| ||| |||||    
T  17556409 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgcccaacattgtgcaagacagactatcaatcacgtcgcc 17556508  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgaga 505  Q
    ||||  |||||| ||||  | ||||||||   || ||||||  |||| | ||||| |||||||||||    
T  17556509 tccaggataaaacaagtctagctacaactgttcgattaactactgcactgtagaaaaccgttcgaga 17556575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 336 - 430
Target Start/End: Complemental strand, 4243170 - 4243076
Alignment:
Q  336 tatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaacc 430  Q
    ||||||||||||||||| ||| |||||||||| | ||| ||| ||||| ||||||| || |||||| | ||||||||||||| | ||||||||||    
T  4243170 tatcgaagttgttactaggttgagtcacgaccaggtcgctctctttaacacgtttcatggcactgcccaaaattgtgcaaggcagactatcaacc 4243076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 416
Target Start/End: Complemental strand, 40130799 - 40130722
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaag 416  Q
    |||||||||||||| ||| |||||||||| | ||| ||| |||||||||||||||| |||||| | ||||||||||||    
T  40130799 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaag 40130722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 339 - 430
Target Start/End: Complemental strand, 4238428 - 4238337
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaacc 430  Q
    |||||||||||||| ||| |||||||||| | ||| ||| ||||| ||||||| || |||||| | ||||||||||||| | ||||||||||    
T  4238428 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaacacgtttcatggcactgcccaaaattgtgcaaggcagactatcaacc 4238337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 371 - 490
Target Start/End: Original strand, 17793467 - 17793586
Alignment:
Q  371 tcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcctccaaaataaaataagttcaactacaactacg 470  Q
    ||||||| |||||||||||||  |||||||||| ||||||| ||||  |||||||||||||| ||  |||||  |||||| ||||  ||||||||||  |    
T  17793467 tcgttctctttaagacgtttcacgacactgctcaaaattgtacaagtcaaactatcaaccacgtcatctccacgataaaacaagtctaactacaactttg 17793566  T
Q  471 cgcttaacttttgcattata 490  Q
    |  ||||||| |||||||||    
T  17793567 ctattaacttctgcattata 17793586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 342 - 545
Target Start/End: Original strand, 36683564 - 36683767
Alignment:
Q  342 agttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcctcc 441  Q
    ||||||||||| ||| ||||| |||  | ||| ||| |||||||||||||||| |||||| | |||||||| |||| | ||||||||||||   ||||||    
T  36683564 agttgttactaggttgagtcatgactaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgtaaggcagactatcaaccacgctgcctcc 36683663  T
Q  442 aaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaaccactcttc 541  Q
    |  |||||| ||| ||| ||||| ||  ||| ||||||  |||| | ||||| | |||| |||| ||| |||||||| | || || ||| |||||||||     
T  36683664 aggataaaacaaggtcagctacatctgtgcgattaactactgcactgtagaaaatcgtttgagaattacaccctcaaatatggtactaagaccactcttt 36683763  T
Q  542 aata 545  Q
    ||||    
T  36683764 aata 36683767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 340 - 442
Target Start/End: Complemental strand, 43302831 - 43302728
Alignment:
Q  340 gaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactg-ctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||| || | | ||| |||||||| ||||||| |||||||||||||||| ||||| |   ||||||||||||||| ||||||||||||  ||||    
T  43302831 gaagttgttattaggctgagttacgacccggtcgttctctttaagacgtttcgtggcactgtccaaaaattgtgcaaggtagactatcaaccacgccgcc 43302732  T
Q  439 tcca 442  Q
    ||||    
T  43302731 tcca 43302728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 339 - 465
Target Start/End: Complemental strand, 17953986 - 17953860
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| ||| ||||||   ||| | | |||||||||||||||| |||||| | ||||||||||||  | | ||||||||||  ||||    
T  17953986 cgaagttgttactaggttgagtaacgaccatgtcgctttctttaagacgtttcgtggcactgcccaaaattgtgcaagacagaatatcaaccacgccgcc 17953887  T
Q  439 tccaaaataaaataagttcaactacaa 465  Q
    ||||| |||||| ||| ||| ||||||    
T  17953886 tccaagataaaacaagctcacctacaa 17953860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 339 - 537
Target Start/End: Complemental strand, 38182349 - 38182152
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||| | ||| |||||||||| | ||| ||| ||||| |||||||||| |||| | | | ||||||||||| | | ||||||||||  ||||    
T  38182349 cgaagttgttac-aggttgagtcacgaccaggtcgctctctttaaaacgtttcgtggcacttcccaagattgtgcaaggcagattatcaaccacgccgcc 38182251  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaaccact 537  Q
    ||||  |||||| |||  || ||||||||  ||  ||||||  |||| |||| || ||||||||||||||| ||| |||| | || || ||||||||||    
T  38182250 tccaggataaaacaagcacagctacaactgtgctgttaactactgcactataaaaaaccgttcgagatttacaccttcaaatatggtactaaaaccact 38182152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 341 - 450
Target Start/End: Complemental strand, 2355570 - 2355461
Alignment:
Q  341 aagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcctc 440  Q
    ||||||||||||  || |||||| |||  |||  |||||||||||||||||||||||||  || ||||||||||||  | ||||||||||||  ||||||    
T  2355570 aagttgttactagattgagtcaccaccatatcactctttttaagacgtttcgtgacacttttcaaaattgtgcaagacagactatcaaccacgccgcctc 2355471  T
Q  441 caaaataaaa 450  Q
     || ||||||    
T  2355470 aaagataaaa 2355461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 432
Target Start/End: Complemental strand, 28559767 - 28559674
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccac 432  Q
    |||||||||||||| ||| |||||||||    ||| ||| | |||||||||||||| |||||  | ||||||||||||| ||||||||||||||    
T  28559767 cgaagttgttactaggttgagtcacgacaatgtcgctctctataagacgtttcgtggcactgtccaaaattgtgcaaggcaaactatcaaccac 28559674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 379 - 432
Target Start/End: Original strand, 29220286 - 29220339
Alignment:
Q  379 tttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccac 432  Q
    |||||||||||| ||| ||||| || ||||||||||||||| ||||||||||||    
T  29220286 tttaagacgttttgtgtcactgatcaaaattgtgcaaggtagactatcaaccac 29220339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 432
Target Start/End: Complemental strand, 4544323 - 4544271
Alignment:
Q  379 tttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccac 432  Q
    ||||||||||||| || |||||||| ||||||||||| ||| ||||||||||||    
T  4544323 tttaagacgtttcatggcactgctcaaaattgtgcaa-gtagactatcaaccac 4544271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 430
Target Start/End: Complemental strand, 17955882 - 17955811
Alignment:
Q  358 agtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaacc 430  Q
    |||||||||| | ||| | |||||||||||||||| | |||| | ||||||||||||||||| |||| |||||    
T  17955882 agtcacgaccaggtcgctttttttaagacgtttcgcggcactac-ctaaattgtgcaaggtagactagcaacc 17955811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 430
Target Start/End: Original strand, 32015702 - 32015773
Alignment:
Q  358 agtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaacc 430  Q
    |||||||||| | ||| ||| |||||||||||||||| |||| | || |||||||||||||| |||| |||||    
T  32015702 agtcacgaccaggtcgctctctttaagacgtttcgtggcactac-ctgaattgtgcaaggtagactagcaacc 32015773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 467
Target Start/End: Original strand, 34517264 - 34517349
Alignment:
Q  379 tttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcctccaaaataaaataagttcaactacaact 467  Q
    |||||||||||||||| ||||| || ||||||||||||| | ||||||||||||  |||| |||| |||||| ||  ||||||||||||    
T  34517264 tttaagacgtttcgtggcactg-tcaaaattgtgcaagg-agactatcaaccacgacgcccccaagataaaacaa-ctcaactacaact 34517349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 339 - 545
Target Start/End: Original strand, 7086 - 7292
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| ||| |||||||||||||||| |||||| | ||||||||||||| | ||||||||||||  ||||    
T  7086 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcc 7185  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaaccactc 538  Q
    ||||  |||||| ||| ||| ||||||||  ||| ||||||  |||| | ||||| ||||||||||| |||  ||||||| | |  |||||| |||||||    
T  7186 tccaggataaaacaagctcagctacaactgtgcggttaactactgcactgtagaaaaccgttcgagaattacgccctcaaatattgtattaagaccactc 7285  T
Q  539 ttcaata 545  Q
    || ||||    
T  7286 tttaata 7292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 306 - 519
Target Start/End: Complemental strand, 24589311 - 24589097
Alignment:
Q  306 tttccaaattctattttgaaaa-agaatatatatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctct 404  Q
    |||| ||||||||||||  ||| |||| || ||||||||||||||||| ||| |||||||| | ||||| ||| ||||| |||||||||||||||   |     
T  24589311 tttcgaaattctattttctaaagagaacatctatcgaagttgttactaagttgagtcacgatcagatcgctctctttaaaacgtttcgtgacactttcca 24589212  T
Q  405 aaattgtgcaaggtaaactatcaaccacatcgcctccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgag 504  Q
    |||||||||||| || ||||||||||||  || |||||  |||||| |||| |||||||||||  ||| ||||||  |||||| ||||| ||||||||||    
T  24589211 aaattgtgcaagatagactatcaaccacgccgtctccaggataaaacaagtccaactacaactgtgcggttaactactgcattgtagaaaaccgttcgag 24589112  T
Q  505 atttataccctcaat 519  Q
    | ||| ||| |||||    
T  24589111 aattacaccttcaat 24589097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 326 - 518
Target Start/End: Complemental strand, 29892387 - 29892195
Alignment:
Q  326 aaagaatatatatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactat 425  Q
    ||||||||| ||||||||||||||||| ||| |||||||  | | ||| ||| ||||||| |||| ||| |||||| | ||||||||||||  |||||||    
T  29892387 aaagaatatctatcgaagttgttactaggttgagtcacggtcaggtcgctctctttaagaagtttggtggcactgcccaaaattgtgcaagacaaactat 29892288  T
Q  426 caaccacatcgcctccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaa 518  Q
    |||||||| | ||||||  |||||| |||| || ||||||||  | | |||||| ||||||| ||||| ||| ||||| ||||| ||||||||    
T  29892287 caaccacacctcctccaggataaaacaagtccagctacaactgtgtggttaactattgcattgtagaaaacctttcgatatttacaccctcaa 29892195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 311 - 442
Target Start/End: Complemental strand, 11614233 - 11614102
Alignment:
Q  311 aaattctattttgaaaaagaatatatatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattg 410  Q
    ||||||| |||||||||||||||| ||||||||||||||||| ||| ||||||||   | | ||||| ||||| ||||||  || |||||||| ||||||    
T  11614233 aaattcttttttgaaaaagaatatctatcgaagttgttactaggttgagtcacgatgaggttgttctctttaaaacgttttatggcactgctcaaaattg 11614134  T
Q  411 tgcaaggtaaactatcaaccacatcgcctcca 442  Q
    ||||||| | ||||||||||||  ||||||||    
T  11614133 tgcaaggcagactatcaaccacgccgcctcca 11614102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 339 - 467
Target Start/End: Complemental strand, 2700219 - 2700091
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| ||||| ||| |||||||||||||||| ||||| || ||||||||||||  | ||||||||||||  |||     
T  2700219 cgaagttgttactaggttgagtcacgaccagatcgctctctttaagacgtttcgtggcactgttcaaaattgtgcaagacagactatcaaccacgccgct 2700120  T
Q  439 tccaaaataaaataagttcaactacaact 467  Q
    ||||  |||||| |||  |||||||||||    
T  2700119 tccaggataaaacaagcccaactacaact 2700091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 339 - 546
Target Start/End: Original strand, 12688953 - 12689160
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| ||||| |||| | ||  ||| |||||||||||| |||| ||||| | ||||||||||||| | ||||||||||||  || |    
T  12688953 cgaagttgttactaggttgagtcatgaccaggtcactctctttaagacgttttgtgatactgcccaaaattgtgcaaggcagactatcaaccacgccgtc 12689052  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaaccactc 538  Q
    ||||  |||||| ||| ||| ||||||||  ||| ||||||  | || | ||||| ||||||||| | ||| |||||||||| || |||||| || ||||    
T  12689053 tccaggataaaacaagctcagctacaactgtgcggttaactactacactgtagaaaaccgttcgacaattacaccctcaattatggtattaagacgactc 12689152  T
Q  539 ttcaatat 546  Q
    || |||||    
T  12689153 tttaatat 12689160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 339 - 545
Target Start/End: Complemental strand, 11570862 - 11570656
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||| ||| | ||| ||| |||||||||||||||| |||||| | ||||||||||||| | || |||||||||  ||||    
T  11570862 cgaagttgttactaggttgagtcacaaccaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagacaatcaaccacgccgcc 11570763  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaaccactc 538  Q
    ||||  |||||| ||| ||| ||||||||  ||| | ||||  | |  | ||||| ||||||| ||| |||||||||||| | || || ||| |||||||    
T  11570762 tccaggataaaacaagctcagctacaactgtgcggtgaactactccgctgtagaaaaccgttccagaattataccctcaaatatggtactaagaccactc 11570663  T
Q  539 ttcaata 545  Q
    || ||||    
T  11570662 tttaata 11570656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 295 - 442
Target Start/End: Complemental strand, 13736836 - 13736688
Alignment:
Q  295 ttgtttttgaatttccaaattct-attttgaaaaagaatatatatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgt 393  Q
    |||| |||| ||||||||||||| ||||||||||||||||| || |||||||||||||| ||| |||| | ||| | ||  ||| |||| ||||||||||    
T  13736836 ttgtatttggatttccaaattcttattttgaaaaagaatatttaccgaagttgttactaggttgagtcgccaccaggtccctctctttacgacgtttcgt 13736737  T
Q  394 gacactgctctaaattgtgcaaggtaaactatcaaccacatcgcctcca 442  Q
    | ||||||   ||||||||||||| | |||| ||||||||  |||||||    
T  13736736 ggcactgcctaaaattgtgcaaggaagactaccaaccacactgcctcca 13736688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 336 - 467
Target Start/End: Original strand, 21309010 - 21309141
Alignment:
Q  336 tatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatc 435  Q
    ||||||||||||||||| ||| |||||| |||  |||| ||| ||||||||||||| || |||||| | ||||||||||| | | ||||||||||||  |    
T  21309010 tatcgaagttgttactaggttgagtcactaccatatcgctctctttaagacgtttcatggcactgcccaaaattgtgcaatgcagactatcaaccacgcc 21309109  T
Q  436 gcctccaaaataaaataagttcaactacaact 467  Q
    |||||||  |||||| ||| ||| ||||||||    
T  21309110 gcctccaggataaaacaagctcagctacaact 21309141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 306 - 467
Target Start/End: Complemental strand, 20748430 - 20748269
Alignment:
Q  306 tttccaaattctattttgaaaaagaatatatatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctcta 405  Q
    ||||||||||||||||| ||| | ||||| |||| |||||||||||| ||| |||||||||| | |||  || ||||| | ||||| ||  ||||  | |    
T  20748430 tttccaaattctattttaaaagataatatctatcaaagttgttactaggttgagtcacgaccaggtcgccctctttaacatgtttcatggtactgtccaa 20748331  T
Q  406 aattgtgcaaggtaaactatcaaccacatcgcctccaaaataaaataagttcaactacaact 467  Q
    ||||||||||||   ||||||||||||  |||||||| ||||||| |||| || ||||||||    
T  20748330 aattgtgcaaggccgactatcaaccacgccgcctccagaataaaacaagtccatctacaact 20748269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 326 - 537
Target Start/End: Complemental strand, 12406479 - 12406268
Alignment:
Q  326 aaagaatatatatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaa-ttgtgcaaggtaaacta 424  Q
    |||||||||||| ||||||||||||||  || |||||||||| | ||| ||| || ||||||||||||| || ||| ||||| |||||||||| | ||||    
T  12406479 aaagaatatataccgaagttgttactagattgagtcacgaccaggtcgctctcttaaagacgtttcgtggcagtgc-ctaaagttgtgcaaggaagacta 12406381  T
Q  425 tcaaccacatcgcctccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaattgtga 524  Q
    |||| |||  ||||| ||  |||||| | | ||||||||||||  | | ||||||  ||||   ||||| |||||  ||||||||||||||||| | |||    
T  12406380 tcaatcacgccgccttcatgataaaacatgctcaactacaactgtgtggttaactactgcaccgtagaaaaccgtgagagatttataccctcaaatatga 12406281  T
Q  525 tattaaaaccact 537  Q
    || ||||| ||||    
T  12406280 tactaaaatcact 12406268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 340 - 503
Target Start/End: Original strand, 8747765 - 8747928
Alignment:
Q  340 gaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcct 439  Q
    ||||||||||||| ||| |||||||||| | ||| ||| ||||||||||| ||||||||||| | ||||||||||||  |  |||||||| ||  |||||    
T  8747765 gaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgttccgtgacactgcccaaaattgtgcaagacaggctatcaacaacgccgcct 8747864  T
Q  440 ccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcga 503  Q
    |||  |||||| ||| ||| || |||||| | | ||||||  |||| | ||||| |||||||||    
T  8747865 ccaggataaaacaagctcagctgcaactatgtggttaactactgcactgtagaaaaccgttcga 8747928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 379 - 546
Target Start/End: Complemental strand, 33687676 - 33687509
Alignment:
Q  379 tttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcctccaaaataaaataagttcaactacaactacgcgcttaac 478  Q
    |||||||||||||||| |||||  | ||||||||||||  | |||||||||||   || |||||  |||||| ||  ||||||||||||  ||| |||||    
T  33687676 tttaagacgtttcgtggcactggccaaaattgtgcaagacagactatcaaccatgccgtctccaggataaaacaaactcaactacaactgtgcggttaac 33687577  T
Q  479 ttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaaccactcttcaatat 546  Q
    |  |||||| ||||| | | ||||||||||| |||||||| | || || ||||||||||||| |||||    
T  33687576 tactgcattgtagaaaatccttcgagatttacaccctcaaatatggtactaaaaccactctttaatat 33687509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 339 - 467
Target Start/End: Complemental strand, 6407973 - 6407845
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||| | | ||| ||| || ||||||||||||| |||||| | ||||||| ||| | | ||||||||||||  ||||    
T  6407973 cgaagttgttactaggttgagtcacgatcaggtcgctctcttgaagacgtttcgtggcactgcccaaaattgtacaaagcagactatcaaccacgccgcc 6407874  T
Q  439 tccaaaataaaataagttcaactacaact 467  Q
    ||||  |||||| ||| ||| ||||||||    
T  6407873 tccaggataaaacaagctcagctacaact 6407845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 517
Target Start/End: Complemental strand, 16836229 - 16836091
Alignment:
Q  379 tttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcctccaaaataaaataagttcaactacaactacgcgcttaac 478  Q
    |||||||||||||||| |||||| | ||||||| ||||| | ||||||||||||  ||||||||  |||||| |||  || ||||||||  ||| |||      
T  16836229 tttaagacgtttcgtggcactgcccaaaattgtacaaggcagactatcaaccacgccgcctccaggataaaacaagcccagctacaactgtgcggttagt 16836130  T
Q  479 ttttgcattatagaagaccgttcgagatttataccctca 517  Q
    |  |||| | ||||| ||||||||||| ||| |||||||    
T  16836129 tactgcactgtagaaaaccgttcgagaattacaccctca 16836091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 545
Target Start/End: Complemental strand, 17964632 - 17964466
Alignment:
Q  379 tttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcctccaaaataaaataagttcaactacaactacgcgcttaac 478  Q
    |||||||||||||||| ||||   | ||||||||||||| | ||||||||||||  ||||||||  |||||| |||  || || |||||  ||| |||||    
T  17964632 tttaagacgtttcgtggcactatccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaacaagcccagctgcaactgtgcggttaac 17964533  T
Q  479 ttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaaccactcttcaata 545  Q
    |  |||| | ||||| ||||||||||| ||| ||| |||| | || || ||| ||||||||| ||||    
T  17964532 tactgcactgtagaaaaccgttcgagaattacaccttcaaatatggtactaagaccactctttaata 17964466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 429
Target Start/End: Original strand, 19674295 - 19674385
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaac 429  Q
    |||||||||||||| ||| |||||||||| | ||  ||| ||||||||||||| || |||||| | ||||||||||||  | |||||||||    
T  19674295 cgaagttgttactaggttgagtcacgaccaggtcactctctttaagacgtttcatggcactgcccaaaattgtgcaagacagactatcaac 19674385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 330 - 467
Target Start/End: Complemental strand, 22695393 - 22695256
Alignment:
Q  330 aatatatatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaac 429  Q
    |||||||||||| |||||||||| ||| || |||||     | | ||| ||||| ||||||||||||| ||||| ||||||||||||  | || |||||     
T  22695393 aatatatatcgatgttgttactaggttgagacacgattatgttgctctctttaacacgtttcgtgacattgctcaaaattgtgcaagacatacaatcaat 22695294  T
Q  430 cacatcgcctccaaaataaaataagttcaactacaact 467  Q
    |||| ||||||||  |||||| |||| || ||||||||    
T  22695293 cacaccgcctccacgataaaacaagtacagctacaact 22695256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 505
Target Start/End: Original strand, 14509009 - 14509132
Alignment:
Q  382 aagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcctccaaaataaaataagttcaactacaactacgcgcttaacttt 481  Q
    ||||||||||||| ||||| || ||||||||||||  | | ||||||||||  ||| ||||| |||||| ||| ||| ||||||||   || ||||||      
T  14509009 aagacgtttcgtgtcactgttcaaaattgtgcaagacagattatcaaccacgccgcttccaagataaaacaagctcatctacaactgttcgattaactac 14509108  T
Q  482 tgcattatagaagaccgttcgaga 505  Q
    |||||| ||||| | |||||||||    
T  14509109 tgcattgtagaaaatcgttcgaga 14509132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 306 - 390
Target Start/End: Complemental strand, 2760388 - 2760304
Alignment:
Q  306 tttccaaattctattttgaaaaagaatatatatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgttt 390  Q
    |||||||||| |||||||  | ||||||  || |||||||||||||| ||| ||| |||||| | ||||||| ||||| ||||||    
T  2760388 tttccaaattgtattttgttagagaataactagcgaagttgttactaggttaagttacgaccaggtcgttctctttaaaacgttt 2760304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 340 - 396
Target Start/End: Complemental strand, 11534790 - 11534734
Alignment:
Q  340 gaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgac 396  Q
    ||||||||||||| ||| ||||| |||| | ||| ||| ||||||||||||||||||    
T  11534790 gaagttgttactaggttgagtcaagaccaggtcgctctctttaagacgtttcgtgac 11534734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 340 - 396
Target Start/End: Complemental strand, 11560300 - 11560244
Alignment:
Q  340 gaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgac 396  Q
    ||||||||||||| ||| ||||| |||| | ||| ||| ||||||||||||||||||    
T  11560300 gaagttgttactaggttgagtcaagaccaggtcgctctctttaagacgtttcgtgac 11560244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 339 - 545
Target Start/End: Complemental strand, 758481 - 758275
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| ||||| ||| |||||||||||||||| |||| | | ||||||||||||| | ||||||||||||  ||||    
T  758481 cgaagttgttactaggttgagtcacgaccagatcgctctctttaagacgtttcgtggcactacccaaaattgtgcaaggcagactatcaaccacgccgcc 758382  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaaccactc 538  Q
    ||||  |||||| |||  || || |||||  ||| ||||||  |||| | ||||| ||||||||||| ||| |||||||| | || || ||| |||||||    
T  758381 tccaggataaaacaagcccagctgcaactgtgcggttaactactgcactgtagaaaaccgttcgagaattacaccctcaaatatggtactaagaccactc 758282  T
Q  539 ttcaata 545  Q
    || ||||    
T  758281 tttaata 758275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 339 - 545
Target Start/End: Complemental strand, 23666236 - 23666030
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| ||| |||||||||||||||| |||||| | ||||||||||||| | ||||||||||||  ||||    
T  23666236 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcc 23666137  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaaccactc 538  Q
    ||||  |||||| |||  || || |||||  ||| ||||||  |||| | ||||| ||||||||||| ||| |||||||| | || || ||| |||||||    
T  23666136 tccaggataaaacaagcccagctgcaactgtgcggttaactaatgcactgtagaaaaccgttcgagaattacaccctcaaatatggtactaagaccactc 23666037  T
Q  539 ttcaata 545  Q
    || ||||    
T  23666036 tttaata 23666030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 339 - 545
Target Start/End: Complemental strand, 24038484 - 24038278
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| ||| |||||||||||||||| |||||| | ||||||||||||| | ||||||||||||  ||||    
T  24038484 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcc 24038385  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaaccactc 538  Q
    ||||  |||||| |||  || || |||||  ||| ||||||  |||| | ||||| ||||||||||| ||| |||||||| | || || ||| |||||||    
T  24038384 tccaggataaaacaagcccagctgcaactgtgcggttaactaatgcactgtagaaaaccgttcgagaattacaccctcaaatatggtactaagaccactc 24038285  T
Q  539 ttcaata 545  Q
    || ||||    
T  24038284 tttaata 24038278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 339 - 540
Target Start/End: Original strand, 3418975 - 3419176
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| ||||||||||   ||| ||| |||||||||||||||| |||||| | ||||||||||||| | ||||||||||||  | ||    
T  3418975 cgaagttgttactaggttgagtcacgaccaagtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccacc 3419074  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaaccactc 538  Q
    | ||  |||||| ||| |||||| |||||  ||| |||||| ||||||  ||||| |||||| |||||||| |||||||| | || || ||| |||||||    
T  3419075 ttcaggataaaacaagctcaactgcaactgtgcggttaactattgcatcgtagaaaaccgtttgagatttacaccctcaaatatggtactaagaccactc 3419174  T
Q  539 tt 540  Q
    ||    
T  3419175 tt 3419176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 294 - 465
Target Start/End: Complemental strand, 12112799 - 12112628
Alignment:
Q  294 gttgtttttgaatttccaaattctattttgaaaaagaatatatatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgt 393  Q
    ||||| |||| |||| ||||||||||||| |||| |||||| || |||||||||||||| ||| | |||||||  | ||| ||| |||||||||||||||    
T  12112799 gttgtatttggattttcaaattctattttaaaaaggaatatctaccgaagttgttactaggttgaatcacgactaggtcgctctctttaagacgtttcgt 12112700  T
Q  394 gacactgctctaaattgtgcaaggtaaactatcaaccacatcgcctccaaaataaaataagttcaactacaa 465  Q
    | |||||  | || |||||||||  | ||||||||||||| ||||||||  |||||| ||| ||||||||||    
T  12112699 ggcactgtccaaagttgtgcaagacagactatcaaccacaccgcctccaggataaaacaagctcaactacaa 12112628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 339 - 519
Target Start/End: Original strand, 3033624 - 3033804
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| ||| ||||||||||||| || |||||| | ||||||||||||| | ||||||||||||| ||||    
T  3033624 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcatggcactgcccaaaattgtgcaaggcagactatcaaccacaccgcc 3033723  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaat 519  Q
    || |  |||||| ||| ||| ||||||||   || ||||||  |||| | ||||| ||||||||||| ||| ||| |||||    
T  3033724 tcaaggataaaacaagctcagctacaactgttcgattaactactgcactgtagaaaaccgttcgagaattacaccttcaat 3033804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 339 - 518
Target Start/End: Original strand, 20520034 - 20520213
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||  ||| |||||||||||||||| |||||| | | ||||||||||| | ||||||||||||  ||||    
T  20520034 cgaagttgttactaggttgagtcacgaccaggtcactctctttaagacgtttcgtggcactgcccaagattgtgcaagggagactatcaaccacgccgcc 20520133  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaa 518  Q
    ||||| |||||| |||| || ||||||||  ||| ||||||  || | | ||||| || |||||||||||| ||| ||||    
T  20520134 tccaagataaaacaagtccagctacaactgtgcggttaactactgtactgtagaaaactgttcgagatttacaccttcaa 20520213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 339 - 505
Target Start/End: Complemental strand, 7571331 - 7571165
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| ||| |||||||||||||||| |||||| | ||||||||||||  | |||||||| |||  ||||    
T  7571331 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaatcacgccgcc 7571232  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgaga 505  Q
    ||||  |||||| ||| ||| ||||||||  ||| ||||||  |||| | ||||| |||||||||||    
T  7571231 tccaggataaaacaagctcagctacaactgtgcggttaactactgcactgtagaaaaccgttcgaga 7571165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 339 - 465
Target Start/End: Original strand, 18467205 - 18467331
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| ||| |||||||||||||||| |||||| | ||||||||||||| | ||||| ||||||  ||||    
T  18467205 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactattaaccacgccgcc 18467304  T
Q  439 tccaaaataaaataagttcaactacaa 465  Q
    ||||  |||||| |||| |||||||||    
T  18467305 tccaggataaaacaagtccaactacaa 18467331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 339 - 519
Target Start/End: Original strand, 3672566 - 3672746
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| ||| ||||||||||||| || |||||| | ||||||||||||| | ||||||||||||  ||||    
T  3672566 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcatggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcc 3672665  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaat 519  Q
    ||||  |||||| |||  || ||||||||   || ||||||  |||| | ||||| ||||||||||| ||| ||| |||||    
T  3672666 tccaggataaaacaagcccagctacaactgttcgattaactactgcactgtagaaaaccgttcgagaattacaccttcaat 3672746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 339 - 519
Target Start/End: Original strand, 3692598 - 3692778
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| ||| ||||||||||||| || |||||| | ||||||||||||| | ||||||||||||  ||||    
T  3692598 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcatggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcc 3692697  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaat 519  Q
    ||||  |||||| |||  || ||||||||   || ||||||  |||| | ||||| ||||||||||| ||| ||| |||||    
T  3692698 tccaggataaaacaagcccagctacaactgttcgattaactactgcactgtagaaaaccgttcgagaattacaccttcaat 3692778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 339 - 467
Target Start/End: Complemental strand, 39775841 - 39775713
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||| ||||| ||| |||||||||| | ||| ||| |||||||||||||||| |||||| | ||||||||||||| | ||||||||||||  ||||    
T  39775841 cgaagttgctactaggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcc 39775742  T
Q  439 tccaaaataaaataagttcaactacaact 467  Q
    ||||  |||||| ||| ||| ||||||||    
T  39775741 tccaggataaaacaagctcagctacaact 39775713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 339 - 546
Target Start/End: Complemental strand, 14438808 - 14438601
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | |||  || |||||||||||||||| |||| | | ||||||||||||| | || |||||||||  ||||    
T  14438808 cgaagttgttactaggttgagtcacgaccaggtcgccctctttaagacgtttcgtggcactacccaaaattgtgcaaggcagacaatcaaccacgccgcc 14438709  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaaccactc 538  Q
    ||||  |||||| |||  || || |||||  ||| ||||||  |||| | ||||| ||||||||||| ||| |||||||| | || || ||| |||||||    
T  14438708 tccaggataaaacaagcccagctgcaactgtgcggttaactactgcactgtagaaaaccgttcgagaattacaccctcaaatatggtactaagaccactc 14438609  T
Q  539 ttcaatat 546  Q
    || |||||    
T  14438608 tttaatat 14438601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 306 - 465
Target Start/End: Original strand, 28125064 - 28125224
Alignment:
Q  306 tttccaaattctattttgaaaaagaatatatatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctcta 405  Q
    |||| |||||||||||||||| ||||||| ||||||| ||||||||| ||| |||||||||| | | | || ||||||||| ||||||| |||||||  |    
T  28125064 tttctaaattctattttgaaagagaatatctatcgaaattgttactaggttgagtcacgaccaggttgctc-ttttaagacatttcgtggcactgcttaa 28125162  T
Q  406 aattgtgcaaggtaaactatcaaccacatcgcctccaaaat--aaaataagttcaactacaa 465  Q
    |||||||||||  | ||||| |||||||  |||||||  ||  |||| ||||||||||||||    
T  28125163 aattgtgcaagacagactattaaccacactgcctccaggattaaaaacaagttcaactacaa 28125224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 339 - 485
Target Start/End: Original strand, 29715624 - 29715770
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    ||||||||||| || ||| |||||||||| ||||| ||||||||||||||||||||||||||  | ||||||||| ||| | ||||||||||||  ||||    
T  29715624 cgaagttgttattaggttgagtcacgaccagatcgctctttttaagacgtttcgtgacactgtccaaaattgtgctaggaagactatcaaccacgccgcc 29715723  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgca 485  Q
    || |  |||||| |||| || ||||| ||  ||| |||||| |||||    
T  29715724 tctaggataaaacaagtccagctacagctgtgcggttaactattgca 29715770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 339 - 467
Target Start/End: Complemental strand, 3657353 - 3657225
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||||||| ||||||||   ||||| ||| |||||||||||||||| ||||| || ||||||||||||  | |||||||||||   | ||    
T  3657353 cgaagttgttactatgttgagtcacgattagatcgctctctttaagacgtttcgtggcactgttcaaaattgtgcaagacagactatcaaccatgccacc 3657254  T
Q  439 tccaaaataaaataagttcaactacaact 467  Q
    ||||| |||||| |||| || ||||||||    
T  3657253 tccaagataaaacaagtccagctacaact 3657225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 339 - 545
Target Start/End: Original strand, 29350220 - 29350426
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| ||||||||||   ||| | | |||||||||||||||| |||||| | ||||||||||||| | || ||| ||||   ||||    
T  29350220 cgaagttgttactaggttgagtcacgaccatgtcgctttctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagaccatctaccatgccgcc 29350319  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaaccactc 538  Q
    ||||  |||||| ||| ||||||||||||  | | |||| |  |||| | ||||| ||||||||||| ||| |||||||| | || || ||| |||||||    
T  29350320 tccaggataaaacaagctcaactacaactgtgtggttaattactgcactgtagaaaaccgttcgagaattacaccctcaaatatggtactaagaccactc 29350419  T
Q  539 ttcaata 545  Q
    || ||||    
T  29350420 tttaata 29350426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 339 - 519
Target Start/End: Original strand, 8069660 - 8069839
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| ||| |||||||||||||||| ||||| || ||||||||||||  | ||||||||||||  ||||    
T  8069660 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactg-tccaaattgtgcaagacagactatcaaccacgccgcc 8069758  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaat 519  Q
    ||||  |||||| |||  || || |||||  ||| ||||||  |||| | ||||  ||||||||||| ||| ||| |||||    
T  8069759 tccaggataaaacaagcccagctgcaactgtgcggttaactactgcactgtagataaccgttcgagaattacaccttcaat 8069839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 339 - 519
Target Start/End: Original strand, 8883150 - 8883330
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||  |||||||||| | ||| ||| |||||||||||||||| |||||| | ||||||||||||  | ||||||||||||   |||    
T  8883150 cgaagttgttactaggtcgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgctgcc 8883249  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaat 519  Q
    ||||  |||||| |||  || || |||||  ||| ||||||  |||| | ||||| ||||||||||| ||| ||| |||||    
T  8883250 tccaggataaaacaagcccagctgcaactgtgcggttaactactgcactgtagaaaaccgttcgagaattacaccttcaat 8883330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 340 - 540
Target Start/End: Original strand, 55431296 - 55431496
Alignment:
Q  340 gaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcct 439  Q
    |||||||||| || ||| |||||||| | | ||| ||| ||||||||||||||||||||||    ||||| ||||||| | ||||||||||||  |||||    
T  55431296 gaagttgttattaggttgagtcacgatcaggtcgctctctttaagacgtttcgtgacactgtcaaaaattatgcaaggcagactatcaaccacgccgcct 55431395  T
Q  440 ccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaaccactct 539  Q
    |||  |||||| |||| || ||||||||  ||| ||||||  |||| | ||||| || |||||||| ||  |||||||| | || || ||| ||||||||    
T  55431396 ccaggataaaacaagtccagctacaactgtgcggttaactactgcactgtagaaaactgttcgagaattgcaccctcaaatatggtactaagaccactct 55431495  T
Q  540 t 540  Q
    |    
T  55431496 t 55431496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 339 - 518
Target Start/End: Complemental strand, 49971537 - 49971358
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| ||| |||||||||||||||| ||||   | ||||||||||||| | |||||||| |||  ||||    
T  49971537 cgaagttgttactaggttgagtcacgaccaggtcgatctctttaagacgtttcgtggcactatccaaaattgtgcaaggcagactatcaatcacgccgcc 49971438  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaa 518  Q
    ||||  |||||| |||| || || |||||  ||  ||||||  | || | ||||| ||||||||||| ||| ||||||||    
T  49971437 tccaggataaaacaagtccagctgcaactgtgcagttaactacttcactgtagaaaaccgttcgagaattacaccctcaa 49971358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 392
Target Start/End: Complemental strand, 25726953 - 25726853
Alignment:
Q  291 attgttgtttttgaatttccaaattctattttgaaaaagaatatatatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgttt 390  Q
    |||||||| |||| ||||| ||||| ||||||||||||||||||||| | |||||| |||||  || |||||||||| | ||| ||| ||||||||||||    
T  25726953 attgttgtgtttggatttctaaattttattttgaaaaagaatatataccaaagttg-tactagattgagtcacgaccaggtcgctctctttaagacgttt 25726855  T
Q  391 cg 392  Q
    ||    
T  25726854 cg 25726853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 332 - 401
Target Start/End: Original strand, 27708851 - 27708920
Alignment:
Q  332 tatatatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgc 401  Q
    |||||| |||||||||||||| ||| |||||||||| | ||||||| |||||||||||||||| ||||||    
T  27708851 tatataccgaagttgttactaggttgagtcacgaccaggtcgttctctttaagacgtttcgtggcactgc 27708920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 382 - 545
Target Start/End: Original strand, 27708959 - 27709122
Alignment:
Q  382 aagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcctccaaaataaaataagttcaactacaactacgcgcttaacttt 481  Q
    |||||||||| || |||||| | ||||| ||||||||| ||||||||||||  ||||||||  |||||| |||  || || |||||  ||| ||||||      
T  27708959 aagacgtttcatggcactgcccaaaattatgcaaggtagactatcaaccacgccgcctccaggataaaacaagcccagcttcaactgtgcggttaactac 27709058  T
Q  482 tgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaaccactcttcaata 545  Q
    |||| | ||||| ||||||||||| ||| |||||||| | || || ||| | ||||||||||||    
T  27709059 tgcactgtagaaaaccgttcgagaattacaccctcaaatatggtactaagatcactcttcaata 27709122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 339 - 465
Target Start/End: Complemental strand, 12965986 - 12965860
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    ||||||||||||||  || |||||| ||| | ||| ||| ||||||||||||  || |||||| | ||||||||||||  | ||||||||||||  ||||    
T  12965986 cgaagttgttactagattgagtcacaaccaggtcgctctctttaagacgttttatggcactgcccaaaattgtgcaagacagactatcaaccacgccgcc 12965887  T
Q  439 tccaaaataaaataagttcaactacaa 465  Q
    ||||  |||||| |||| |||||||||    
T  12965886 tccaggataaaacaagtccaactacaa 12965860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 545
Target Start/End: Complemental strand, 23661527 - 23661371
Alignment:
Q  389 ttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcctccaaaataaaataagttcaactacaactacgcgcttaacttttgcatta 488  Q
    |||||| |||||| | ||||||||||||| | ||||||||||||  ||||||||  |||||| |||  || || |||||  ||| ||||||  |||| |     
T  23661527 ttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaacaagcccagctgcaactgtgcggttaactaatgcactg 23661428  T
Q  489 tagaagaccgttcgagatttataccctcaattgtgatattaaaaccactcttcaata 545  Q
    ||||| ||||||||||| ||| |||||||| | || || ||| ||||||||| ||||    
T  23661427 tagaaaaccgttcgagaattacaccctcaaatatggtactaagaccactctttaata 23661371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 461 - 545
Target Start/End: Original strand, 46964117 - 46964201
Alignment:
Q  461 tacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaaccactcttcaata 545  Q
    |||||||| | | |||||| ||||| ||||||| ||||||||||||||| |||||||| | || |||||| ||||||||| ||||    
T  46964117 tacaactatgtggttaactattgcactatagaaaaccgttcgagatttacaccctcaaatatggtattaagaccactctttaata 46964201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 505
Target Start/End: Original strand, 18471988 - 18472153
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| ||| |||| || ||| |||| ||||||   ||||||||||||| | ||||||||||||  ||||    
T  18471988 cgaagttgttactaggttgagtcacgaccaggtcgctctctttacgatgtt-cgtggcactgcctaaaattgtgcaaggcagactatcaaccacgccgcc 18472086  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgaga 505  Q
    ||||  |||||| |||  || ||||||||   || ||||||  |||||| ||||| | |||||||||    
T  18472087 tccaggataaaacaagcccagctacaactgttcgattaactactgcattgtagaaaatcgttcgaga 18472153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 336 - 505
Target Start/End: Complemental strand, 12971749 - 12971580
Alignment:
Q  336 tatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatc 435  Q
    ||||||||||||||||| ||| | |||||||| | ||  ||| |||||||||||||||| || ||| | ||||||||||||  | | |||||| |||  |    
T  12971749 tatcgaagttgttactaggttgactcacgaccaggtctctctctttaagacgtttcgtggcattgcccaaaattgtgcaagacagattatcaatcacgcc 12971650  T
Q  436 gcctccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgaga 505  Q
    ||||| |  |||||| |||  |||||||||||   |  ||||||  |||||| ||||| |||||||||||    
T  12971649 gcctctaggataaaacaagcccaactacaactgttcaattaactactgcattgtagaaaaccgttcgaga 12971580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 519
Target Start/End: Original strand, 8887910 - 8888090
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| ||| |||||||||||| ||  |||||  | ||||||||||||  | | ||||||||||  ||||    
T  8887910 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgttttgttgcactgtccaaaattgtgcaagacagattatcaaccacgccgcc 8888009  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaat 519  Q
    ||||  |||||| || | || || |||||  ||| ||||||  | || | ||||| ||||||||||| ||| ||| |||||    
T  8888010 tccaggataaaacaaatccagctgcaactgtgcggttaactactacactgtagaaaaccgttcgagaattacaccttcaat 8888090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 465
Target Start/End: Original strand, 16013729 - 16013816
Alignment:
Q  379 tttaagacgtttcgtgacactg-ctctaaattgtgcaaggtaaactatcaaccacatcgcctccaaaataaaataagttcaactacaa 465  Q
    |||||||||||||||||||||  ||  |||||||||||| || |||||| |||||  ||||||||  |||||||||| ||| ||||||    
T  16013729 tttaagacgtttcgtgacactatctaaaaattgtgcaagatagactatccaccacgccgcctccaggataaaataagctcatctacaa 16013816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 385 - 433
Target Start/End: Original strand, 20507679 - 20507727
Alignment:
Q  385 acgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccaca 433  Q
    |||||| ||| |||||||| ||||||||||||| | |||||||||||||    
T  20507679 acgtttggtggcactgctcaaaattgtgcaaggcagactatcaaccaca 20507727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 513
Target Start/End: Complemental strand, 32474751 - 32474619
Alignment:
Q  381 taagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcctccaaaataaaataagttcaactacaactacgcgcttaactt 480  Q
    |||||||||||||| |||||| | ||||||||||||  | ||||||||||||  || |||||  |||||| |||  || ||||||||   || ||||||     
T  32474751 taagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgtctccaggataaaacaagcccagctacaactgttcgattaacta 32474652  T
Q  481 ttgcattatagaagaccgttcgagatttatacc 513  Q
     |||| | ||||| | ||||||||| |||||||    
T  32474651 ctgcactgtagaaaatcgttcgagaattatacc 32474619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 295 - 545
Target Start/End: Complemental strand, 19578571 - 19578322
Alignment:
Q  295 ttgtttttgaatttccaaattctattttgaaaaagaatatatatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtg 394  Q
    |||| |||| |||| ||||||||| ||||||| ||||||| || ||||||||||| || ||| |||||||||| ||||| ||| |||||||||||| |||    
T  19578571 ttgtatttggattttcaaattctactttgaaagagaatatctaccgaagttgttattaggttgagtcacgaccagatcgctctctttaagacgttttgtg 19578472  T
Q  395 acactgctctaaattgtgcaaggtaaactatcaaccacatcgcctccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaag 494  Q
     |||| |   ||||||||||||| | |||||||||||    |||||||   ||||| |||| ||||||||| |  ||| |||||| ||||| | |||||     
T  19578471 gcactacctaaaattgtgcaaggaagactatcaaccatgctgcctccagggtaaaacaagtccaactacaattgggcggttaactattgcactgtagaaa 19578372  T
Q  495 accgttcgagatttataccctcaattgtgatattaaaaccactcttcaata 545  Q
    | ||||||||||||| ||| |||| | || |||||||| ||||||| ||||    
T  19578371 atcgttcgagatttacaccttcaa-tatggtattaaaatcactctttaata 19578322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 339 - 467
Target Start/End: Original strand, 30650911 - 30651039
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| ||||| ||| |||||||||||||||| |||||| | ||||||||||||| | ||||||||||||  ||||    
T  30650911 cgaagttgttactaggttgagtcacgaccagatcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcc 30651010  T
Q  439 tccaaaataaaataagttcaactacaact 467  Q
    ||||| |||||| |||  || ||||||||    
T  30651011 tccaagataaaacaagcccagctacaact 30651039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 339 - 519
Target Start/End: Original strand, 30658245 - 30658425
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||||||| |||||||||| | ||| ||| |||||||||||||||| |||| ||| ||||||||||||| | ||||||||||||  ||||    
T  30658245 cgaagttgttactatgttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactactcaaaattgtgcaaggcagactatcaaccacgccgcc 30658344  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaat 519  Q
    ||||  |||||| |||  || || |||||  ||| ||||||  |||| | ||||| ||||||||||| ||| ||| |||||    
T  30658345 tccaggataaaacaagcccagctgcaactgtgcggttaactactgcactgtagaaaaccgttcgagaattacaccttcaat 30658425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 339 - 518
Target Start/End: Original strand, 29677363 - 29677542
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||| |   ||| ||| |||||||||||||||| |||||| | ||||||||||| | | ||||||||||||  ||||    
T  29677363 cgaagttgttactaggttgagtcacgatcatgtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaagcagactatcaaccacgccgcc 29677462  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaa 518  Q
    ||||  ||||||||||| || ||||||||  ||| ||||||  |||| | ||||| ||||||||||| ||| ||||||||    
T  29677463 tccaggataaaataagtccagctacaactgtgcggttaactactgcactgtagaaaaccgttcgagaattacaccctcaa 29677542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 339 - 545
Target Start/End: Complemental strand, 1935106 - 1934900
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| ||| |||||||||||||||| |||||| | ||||||||||||  | ||||||||||||  ||||    
T  1935106 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgcc 1935007  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaaccactc 538  Q
    ||||  |||||| |||  || || |||||  ||| ||||||  |||| | ||||| ||||||||||| ||| |||||||| | || || ||| |||||||    
T  1935006 tccaggataaaacaagcccagctgcaactgtgcggttaactaatgcactgtagaaaaccgttcgagaattacaccctcaaatatggtactaagaccactc 1934907  T
Q  539 ttcaata 545  Q
    || ||||    
T  1934906 tttaata 1934900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 339 - 519
Target Start/End: Complemental strand, 10160837 - 10160658
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| ||| |||||||||||||||| |||||| | ||||||||||||| | ||||||||||||  ||||    
T  10160837 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcc 10160738  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaat 519  Q
    ||||  |||||| ||| ||| || |||||  ||| ||||| | |||| | ||||| ||||||||||| ||| ||| |||||    
T  10160737 tccaggataaaacaagctcagctgcaactgtgcggttaac-tatgcactgtagaaaaccgttcgagaattacaccttcaat 10160658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 339 - 467
Target Start/End: Complemental strand, 25478410 - 25478282
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||| ||| | ||| ||| ||||||||||||||||||||||| | ||||||||||||| | ||||||||||||  ||||    
T  25478410 cgaagttgttactaggttgagtcacaaccaggtcgctctctttaagacgtttcgtgacactgcccaaaattgtgcaaggcagactatcaaccacgccgcc 25478311  T
Q  439 tccaaaataaaataagttcaactacaact 467  Q
    |||| ||||||| |||  || ||||||||    
T  25478310 tccagaataaaacaagcccagctacaact 25478282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 339 - 546
Target Start/End: Complemental strand, 25497438 - 25497232
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||| ||||||||| ||| |||||||||| | ||| ||| ||||||||||||||| ||||||| | || |||||||||  | ||||||||||||  ||||    
T  25497438 cgaaattgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcgtaacactgcccaaatttgtgcaagtcagactatcaaccacgccgcc 25497339  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaaccactc 538  Q
    ||||  |||||| |||  || ||||||||  ||| ||||| | |||| | ||||| ||||||||||| ||| |||||||| | ||||| ||| |||||||    
T  25497338 tccaggataaaacaagcccagctacaactgtgcggttaac-tatgcactgtagaaaaccgttcgagaattacaccctcaaatatgatactaagaccactc 25497240  T
Q  539 ttcaatat 546  Q
    || |||||    
T  25497239 tttaatat 25497232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 339 - 518
Target Start/End: Original strand, 31326721 - 31326899
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| ||| ||||||||||||| || |||||| | ||||||||||||| | ||||||||||||  | ||    
T  31326721 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcatgccactgcccaaaattgtgcaaggcagactatcaaccacgccacc 31326820  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaa 518  Q
    ||||  |||||| |||  |||||||||||  ||| ||||||  |||| | ||||| ||||||||||| ||| ||||||||    
T  31326821 tccaggataaaacaagcccaactacaactgtgcgattaactactgcact-tagaaaaccgttcgagaattacaccctcaa 31326899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 339 - 545
Target Start/End: Complemental strand, 9180837 - 9180631
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| ||| |||||||||||||||| |||||  | ||||||||||||| | ||||||||||||  ||||    
T  9180837 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgtccaaaattgtgcaaggcagactatcaaccacgccgcc 9180738  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaaccactc 538  Q
    ||||  |||||| |||  || ||||||||    | ||||||  |||| | ||||| | ||||||||| ||| |||||||| | || || ||| |||||||    
T  9180737 tccaggataaaacaagcccagctacaactgtttgattaactactgcactgtagaaaatcgttcgagaattacaccctcaaatatggtactaagaccactc 9180638  T
Q  539 ttcaata 545  Q
    || ||||    
T  9180637 tttaata 9180631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 294 - 545
Target Start/End: Complemental strand, 17545457 - 17545205
Alignment:
Q  294 gttgtttttgaatttccaaattctattttgaaaaagaatatatatcgaagttgttactatgtttagtcacgacccgatcgttcttt-ttaagacgtttcg 392  Q
    |||||||||| ||||| ||||||  |||| ||||||||||| || |||||||||||||| ||| ||| |||| | | ||||| ||| |||||||||||||    
T  17545457 gttgtttttggatttctaaattcctttttaaaaaagaatatctaccgaagttgttactaggttgagttacgatcaggtcgttttttcttaagacgtttcg 17545358  T
Q  393 tgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcctccaaaataaaataagttcaactacaactacgcgcttaacttttgcattataga 492  Q
    |||||||  || || ||||||||   | ||||||||||||  | |||| |  |||||| |||  || |||||||   ||| ||||||   ||||| ||||    
T  17545357 tgacacttttcaaagttgtgcaaaaaagactatcaaccacgccacctcgaggataaaacaagcacatctacaacagtgcggttaactaacgcattgtaga 17545258  T
Q  493 agaccgttcgagatttataccctcaattgtgatattaaaaccactcttcaata 545  Q
    | | | ||||||||||| |||||||| | ||||| ||| ||||||||| ||||    
T  17545257 aaatcattcgagatttacaccctcaaatatgatactaagaccactctttaata 17545205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 339 - 545
Target Start/End: Complemental strand, 9189916 - 9189710
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | | | ||| |||||||||||||||| |||||  | ||||||||||||| | ||||||||||||  ||||    
T  9189916 cgaagttgttactaggttgagtcacgaccaggttgctctctttaagacgtttcgtggcactgtccaaaattgtgcaaggcagactatcaaccacgccgcc 9189817  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaaccactc 538  Q
    ||||  |||||| |||  || ||||||||    | ||||||  |||| | ||||| | ||||||||| ||| |||||||| | || || ||| |||||||    
T  9189816 tccaggataaaacaagcccagctacaactgtttgattaactactgcactgtagaaaatcgttcgagaattacaccctcaaatatggtactaagaccactc 9189717  T
Q  539 ttcaata 545  Q
    || ||||    
T  9189716 tttaata 9189710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 339 - 545
Target Start/End: Original strand, 12796907 - 12797113
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    ||||||||||| || ||| |||||||||| ||||| ||| |||||||||||| ||| |||||| | ||||||| ||||  | ||||||||||||  || |    
T  12796907 cgaagttgttattaggttgagtcacgaccagatcgctctctttaagacgttttgtggcactgcccaaaattgttcaagacagactatcaaccacgccgtc 12797006  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaaccactc 538  Q
    ||||  |||||| |||| |  ||||||||  ||| ||||||  ||||   ||||| ||||||||||| ||| |||||||| | || || ||| |||||||    
T  12797007 tccaggataaaacaagtccggctacaactgtgcggttaactactgcaccgtagaaaaccgttcgagaattacaccctcaaatatggtactaagaccactc 12797106  T
Q  539 ttcaata 545  Q
    || ||||    
T  12797107 tttaata 12797113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 339 - 467
Target Start/End: Complemental strand, 40847708 - 40847580
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    ||||||||||||||  || ||||||||||   ||||||| |||||||||||| ||| ||||| || || |||||||||| ||||||||||||||  | ||    
T  40847708 cgaagttgttactagattgagtcacgaccatgtcgttctctttaagacgttttgtggcactgttcaaagttgtgcaaggcaaactatcaaccacgccacc 40847609  T
Q  439 tccaaaataaaataagttcaactacaact 467  Q
    |||   |||||| |||| |||||||||||    
T  40847608 tcctggataaaacaagtccaactacaact 40847580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 339 - 546
Target Start/End: Original strand, 29677749 - 29677956
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| |||  ||||||| ||| ||| ||||||   ||||||||||||| |||||||||||||   ||||    
T  29677749 cgaagttgttactaggttgagtcacgaccaggtcgctctcattaagacatttagtggcactgccaaaaattgtgcaaggcaaactatcaaccaagccgcc 29677848  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaaccactc 538  Q
    | ||  |||||| |||  || ||||||||  ||| ||||||  |||| | ||||| ||||||||||| ||| |||| ||| | || || ||| |||||||    
T  29677849 tacaggataaaaaaagcccagctacaactgtgcggttaactactgcactgtagaaaaccgttcgagaattacacccacaaatatggtactaagaccactc 29677948  T
Q  539 ttcaatat 546  Q
    || |||||    
T  29677949 tttaatat 29677956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 339 - 467
Target Start/End: Complemental strand, 42926874 - 42926744
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagac--gtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcg 436  Q
    |||||||||||||| ||| |||||||| | |  || ||| ||||||||  |||||||| |||||| | ||||||||||||||| ||||||||||||  ||    
T  42926874 cgaagttgttactaggttgagtcacgatcaggccgctctctttaagacacgtttcgtggcactgcccaaaattgtgcaaggtagactatcaaccacgccg 42926775  T
Q  437 cctccaaaataaaataagttcaactacaact 467  Q
    ||||||  |||| | ||| ||||||||||||    
T  42926774 cctccaggataatacaagctcaactacaact 42926744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 339 - 505
Target Start/End: Complemental strand, 7737964 - 7737798
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| ||||||||||   ||| ||| ||||||| |||| ||| |||||| | ||||||||||||  | ||||||||||||  ||||    
T  7737964 cgaagttgttactaggttgagtcacgaccatgtcgctctctttaagaagttttgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgcc 7737865  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgaga 505  Q
    ||||  |||||| |||  ||||||||| |   || |||||| ||||| | ||||| |||||||||||    
T  7737864 tccaggataaaacaagcccaactacaattgttcgattaactattgcactgtagaaaaccgttcgaga 7737798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 306 - 416
Target Start/End: Original strand, 20711394 - 20711504
Alignment:
Q  306 tttccaaattctattttgaaaaagaatatatatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctcta 405  Q
    |||||||||||||||||  || | ||||| || |||||||||||||| ||| ||||||||||  |||  || |||||||| |||||||  |||||||| |    
T  20711394 tttccaaattctattttttaagaaaatatctaccgaagttgttactaggttgagtcacgaccatatcactccttttaagatgtttcgtagcactgctcaa 20711493  T
Q  406 aattgtgcaag 416  Q
    |||||||||||    
T  20711494 aattgtgcaag 20711504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 432
Target Start/End: Original strand, 18344413 - 18344506
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccac 432  Q
    ||||||||||||||  || |||||||||| | ||| ||| |||||||||||||||| |||||| | ||||||||||||| | ||||| ||||||    
T  18344413 cgaagttgttactagattgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactattaaccac 18344506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 432
Target Start/End: Original strand, 28603280 - 28603373
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccac 432  Q
    |||||||||||||| ||| |||||||||| | ||| ||| ||||| ||||||||||||||||  | ||||||||||||  | ||||||||||||    
T  28603280 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaaaacgtttcgtgacactgtccaaaattgtgcaagacagactatcaaccac 28603373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 339 - 467
Target Start/End: Complemental strand, 19892579 - 19892451
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| ||| ||||||||||||| || |||||  | |||||||||||   | ||||||||||||  ||||    
T  19892579 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcctggcactgtccaaaattgtgcaacacagactatcaaccacgccgcc 19892480  T
Q  439 tccaaaataaaataagttcaactacaact 467  Q
    ||||  |||||| ||| ||| ||||||||    
T  19892479 tccaggataaaacaagctcagctacaact 19892451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 312 - 432
Target Start/End: Complemental strand, 21523859 - 21523740
Alignment:
Q  312 aattctattttgaaaaagaatatatatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgt 411  Q
    ||||||||||||||||||||||| ||  | |||||||| || ||| |||||||||| | | | | | ||||| |||||||||| |||||| | |||||||    
T  21523859 aattctattttgaaaaagaatatctactggagttgttaataggttgagtcacgaccaggttgctatctttaa-acgtttcgtggcactgcccaaaattgt 21523761  T
Q  412 gcaaggtaaactatcaaccac 432  Q
    |||||| | ||||||||||||    
T  21523760 gcaagggagactatcaaccac 21523740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 339 - 467
Target Start/End: Complemental strand, 35639110 - 35638982
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| | |||||| | | ||| |||||||||||||||||||| |||||| | ||||||||||||  |   ||||||||||  ||||    
T  35639110 cgaagttgttactaagttgaatcacgatcaggtcgctctttttaagacgtttcgtggcactgcccaaaattgtgcaagacagcgtatcaaccacgccgcc 35639011  T
Q  439 tccaaaataaaataagttcaactacaact 467  Q
    ||||  |||||| ||| ||| ||||||||    
T  35639010 tccaggataaaacaagctcagctacaact 35638982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 339 - 442
Target Start/End: Original strand, 35601904 - 35602007
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| | |||||||| | ||| |||||||||||||||||||| |||||  | ||||||||||||  | | ||||||||||  ||||    
T  35601904 cgaagttgttactaggttgaatcacgaccaggtcgctctttttaagacgtttcgtggcactgtccaaaattgtgcaagacagagtatcaaccacgccgcc 35602003  T
Q  439 tcca 442  Q
    ||||    
T  35602004 tcca 35602007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 518
Target Start/End: Complemental strand, 19094608 - 19094428
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    ||||||||||| || ||| |||||||| | | ||| |||  |||| ||||||  ||  ||||| | ||||||||||||| ||| ||||||||||| ||||    
T  19094608 cgaagttgttattaggttgagtcacgatcaggtcgctctccttaaaacgttttttggtactgcccaaaattgtgcaaggcaaaatatcaaccacaccgcc 19094509  T
Q  439 tccaaaat-aaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaa 518  Q
    ||||  || |||| ||| ||| ||||||||  ||| |||| |  |||| | ||||| ||||||||||| ||| ||||||||    
T  19094508 tccaggataaaaacaagctcagctacaactgtgcgattaattactgcactgtagaaaaccgttcgagaattacaccctcaa 19094428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 358 - 432
Target Start/End: Original strand, 42914644 - 42914717
Alignment:
Q  358 agtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccac 432  Q
    |||||||||| | ||||||| |||||||||||||| | |||| | |||| |||||||||||| |||| |||||||    
T  42914644 agtcacgaccaggtcgttctctttaagacgtttcgcggcactac-ctaagttgtgcaaggtagactaacaaccac 42914717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 432
Target Start/End: Original strand, 14104613 - 14104665
Alignment:
Q  379 tttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccac 432  Q
    |||||||||||||||| |||||||| |||||||||||   ||||||||||||||    
T  14104613 tttaagacgtttcgtgtcactgctcaaaattgtgcaa-acaaactatcaaccac 14104665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 408 - 484
Target Start/End: Complemental strand, 13291584 - 13291508
Alignment:
Q  408 ttgtgcaaggtaaactatcaaccacatcgcctccaaaataaaataagttcaactacaactacgcgcttaacttttgc 484  Q
    ||||||||| |||||||||||||||  |||| | |  ||| |||||||||| ||||||||| ||| |||||| ||||    
T  13291584 ttgtgcaagataaactatcaaccacgccgccactatgatagaataagttcagctacaactatgcgattaactattgc 13291508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 339 - 467
Target Start/End: Complemental strand, 29168086 - 29167958
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| ||| |||||||||||||||| |||||| | ||||||||||||| | ||||||||||||  ||||    
T  29168086 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcc 29167987  T
Q  439 tccaaaataaaataagttcaactacaact 467  Q
    ||||  |||||| |||  |||||||||||    
T  29167986 tccaggataaaacaagcccaactacaact 29167958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 339 - 505
Target Start/End: Original strand, 556677 - 556843
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| ||| |||||||||||| ||| |||||| | ||||||||||||| | ||||||||||||  ||||    
T  556677 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgttttgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcc 556776  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgaga 505  Q
    ||||  |||||| ||| ||| ||||||||   || ||||||  |||| | ||||| |||||||||||    
T  556777 tccaggataaaacaagctcagctacaactgttcgattaactactgcactgtagaaaaccgttcgaga 556843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 339 - 505
Target Start/End: Original strand, 561449 - 561615
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| ||| |||||||||||| ||| |||||| | ||||||||||||| | ||||||||||||  ||||    
T  561449 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgttttgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcc 561548  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgaga 505  Q
    ||||  |||||| ||| ||| ||||||||   || ||||||  |||| | ||||| |||||||||||    
T  561549 tccaggataaaacaagctcagctacaactgttcgattaactactgcactgtagaaaaccgttcgaga 561615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 339 - 515
Target Start/End: Original strand, 12103007 - 12103183
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| ||| |||||| | ||| ||| |||||||||||||||| |||||| | ||||||||||||| | ||||||||||||  ||||    
T  12103007 cgaagttgttactaggttgagttacgaccaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcc 12103106  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccct 515  Q
    ||||  |||||| |||  ||||||||| |  ||| ||||||  |||| | ||||| | ||||||||| ||| |||||    
T  12103107 tccaggataaaacaagcccaactacaaatgtgcgattaactactgcactgtagaaaatcgttcgagaattacaccct 12103183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 339 - 455
Target Start/End: Original strand, 26667254 - 26667370
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| ||| |||||||||||||||| |||||| | ||||||||||||| | ||||||||||||  ||||    
T  26667254 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcc 26667353  T
Q  439 tccaaaataaaataagt 455  Q
    ||||  |||||| ||||    
T  26667354 tccaggataaaacaagt 26667370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 339 - 455
Target Start/End: Original strand, 26938851 - 26938967
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| ||| |||||||||||||||| |||||| | ||||||||||||| | ||||||||||||  ||||    
T  26938851 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcc 26938950  T
Q  439 tccaaaataaaataagt 455  Q
    ||||  |||||| ||||    
T  26938951 tccaggataaaacaagt 26938967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 339 - 519
Target Start/End: Complemental strand, 36942378 - 36942198
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| ||| ||||||||||||| || |||||| | ||||||||||||| | ||||||||||||  ||||    
T  36942378 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcatggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcc 36942279  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaat 519  Q
    ||||  |||||| |||  || ||||||||   || ||||||  |||| | ||||| ||||||||||| ||| ||| |||||    
T  36942278 tccaggataaaacaagcccagctacaactgttcgattaactactgcactgtagaaaaccgttcgagaattacaccttcaat 36942198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 339 - 503
Target Start/End: Complemental strand, 41587273 - 41587109
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    ||||||||||||||  || |||||||||| | | | ||| |||||||||||||||||||||| || ||||||||||||  | ||||||||||||  ||||    
T  41587273 cgaagttgttactagtttgagtcacgaccaggttgctctctttaagacgtttcgtgacactgttcaaaattgtgcaagacagactatcaaccacgccgcc 41587174  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcga 503  Q
    ||||  |||||| ||| ||| ||||||||  ||| ||||||  |||| | ||||| |||||||||    
T  41587173 tccaggataaaacaagctcagctacaactgtgcggttaactactgcactgtagaaaaccgttcga 41587109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 292 - 466
Target Start/End: Complemental strand, 16116410 - 16116235
Alignment:
Q  292 ttgttgtttttgaatttccaaattctattttgaaaa-agaatatatatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgttt 390  Q
    ||||||| |||| |||| |||||||| ||||  ||| | ||||| ||||||||||||| ||| ||| |||||||||  | | | |||  |||| ||||||    
T  16116410 ttgttgtatttggattttcaaattcttttttttaaagacaatatttatcgaagttgttgctaggttaagtcacgactaggttgctctccttaaaacgttt 16116311  T
Q  391 cgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcctccaaaataaaataagttcaactacaac 466  Q
    ||||||||||| | ||||||||||||  ||||||||||||||  | ||||| | |||||| |||||||||||||||    
T  16116310 cgtgacactgcccaaaattgtgcaagacaaactatcaaccacgccacctcctagataaaacaagttcaactacaac 16116235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 336 - 501
Target Start/End: Original strand, 39518389 - 39518554
Alignment:
Q  336 tatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatc 435  Q
    ||||||||||||||||| ||| |||||||||| | ||| ||| |||||||||||||||| ||| || | |||||||||| || | ||||||||||||  |    
T  39518389 tatcgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcaccgcccaaaattgtgcatggcagactatcaaccacgcc 39518488  T
Q  436 gcctccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttc 501  Q
    |||||||  |||||| |||| || || |||||  ||| ||||||  |||| | ||||| |||||||    
T  39518489 gcctccaggataaaacaagtccagctgcaactgtgcggttaactactgcagtgtagaaaaccgttc 39518554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 336 - 501
Target Start/End: Original strand, 39523028 - 39523193
Alignment:
Q  336 tatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatc 435  Q
    ||||||||||||||||| ||| |||||||||| | ||| ||| |||||||||||||||| ||| || | ||||||||||||  | ||||||||||||  |    
T  39523028 tatcgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcaccgcccaaaattgtgcaagacagactatcaaccacgcc 39523127  T
Q  436 gcctccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttc 501  Q
    |||||||  |||||| |||| || || |||||  ||| ||||||  |||| | ||||| |||||||    
T  39523128 gcctccaggataaaacaagtccagctgcaactgtgcggttaactactgcactgtagaaaaccgttc 39523193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 339 - 519
Target Start/End: Original strand, 3665914 - 3666094
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||  | ||| ||| || ||||||||||||| |||||| | ||||||||||||| | ||||||||||||  | ||    
T  3665914 cgaagttgttactaggttgagtcacgactaggtcgctctcttcaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccacc 3666013  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaat 519  Q
    || |  |||||| |||| |||||||||||  ||| ||||||  |||| | ||||| |||||||| || ||| ||| |||||    
T  3666014 tctaggataaaacaagtccaactacaactgtgcggttaactactgcactgtagaaaaccgttcgggaattacaccttcaat 3666094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 339 - 539
Target Start/End: Complemental strand, 10759932 - 10759734
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| |||||| ||||||||| ||| |||||| | ||||||||||||| | ||||||||||||  ||||    
T  10759932 cgaagttgttactaggttgagtcacgaccaggtcgctctttt-aagacgttttgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcc 10759834  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaaccactc 538  Q
    ||||  |||||| |||  ||  |||||||  ||| ||||| | ||||   ||||| ||||||||||| |||||||||||| | || || ||| |||||||    
T  10759833 tccaggataaaacaagcccatttacaactgtgcggttaac-tatgcacggtagaaaaccgttcgagaattataccctcaaatatggtactaagaccactc 10759735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 339 - 519
Target Start/End: Complemental strand, 36937624 - 36937444
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    ||||||||||| || ||| |||||||||| | ||| ||| ||||||||||||| || |||||| | ||||||||||||| | ||||||||||||  ||||    
T  36937624 cgaagttgttattaggttgagtcacgaccaggtcgctctctttaagacgtttcatggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcc 36937525  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaat 519  Q
    ||||  |||||| |||  || ||||||||   || ||||||  |||| | ||||| ||||||||||| ||| ||| |||||    
T  36937524 tccaggataaaacaagcccagctacaactgttcgattaactactgcactgtagaaaaccgttcgagaattacaccttcaat 36937444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 341 - 540
Target Start/End: Complemental strand, 6514712 - 6514513
Alignment:
Q  341 aagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcctc 440  Q
    |||||||||||| ||| ||||||||||   ||  ||| |||||||||||||||| |||||| | ||||| ||||||| | ||||||||||||  ||||||    
T  6514712 aagttgttactaggttgagtcacgaccaagtcactctctttaagacgtttcgtggcactgcccaaaattttgcaaggcagactatcaaccacgccgcctc 6514613  T
Q  441 caaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaaccactctt 540  Q
    ||  |||||| ||| | | ||||||||  | | ||||||  |||||| ||||| | | ||||||||||| ||| |||| | || || |||||||||||||    
T  6514612 caggataaaacaagcttagctacaactgtgtggttaactactgcattgtagaaaatcattcgagatttacaccttcaaatatggtactaaaaccactctt 6514513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 339 - 450
Target Start/End: Original strand, 36423619 - 36423730
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||| ||||| | ||| ||| |||||||||||||| | |||||| | ||||||||||||| | ||||||||||||  ||||    
T  36423619 cgaagttgttactaggttgagtcgcgaccaggtcgctctctttaagacgtttcgcggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcc 36423718  T
Q  439 tccaaaataaaa 450  Q
    |||| |||||||    
T  36423719 tccagaataaaa 36423730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 339 - 505
Target Start/End: Original strand, 7451740 - 7451906
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| ||| |||||||||||||||| |||||  | ||||||||||||| | ||||||||||||   |||    
T  7451740 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgtccaaaattgtgcaaggcagactatcaaccacgctgcc 7451839  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgaga 505  Q
    ||||  |||||| ||| ||| || |||||  ||| ||||||  | || | ||||| |||||||||||    
T  7451840 tccaggataaaacaagctcagctgcaactgtgcggttaactactacactgtagaaaaccgttcgaga 7451906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 340 - 467
Target Start/End: Complemental strand, 12042046 - 12041917
Alignment:
Q  340 gaagttgttactatgt--ttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgc 437  Q
    ||||||||||||| ||  | |||||||||| | ||||||| |||||||||||||||| |||||| | ||| | ||||||| ||||||||||||||  |||    
T  12042046 gaagttgttactaggtcatgagtcacgaccaggtcgttctctttaagacgtttcgtggcactgcccaaaaatatgcaaggcaaactatcaaccacgccgc 12041947  T
Q  438 ctccaaaataaaataagttcaactacaact 467  Q
    |||||  |||||| |||| || ||||||||    
T  12041946 ctccaggataaaacaagtccagctacaact 12041917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 353 - 519
Target Start/End: Complemental strand, 32461648 - 32461482
Alignment:
Q  353 tgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcctccaaaataaaata 452  Q
    |||| |||||||||| | ||| ||| |||||||||||| ||| |||||| | ||||||||||||  | ||||||||||||  ||||||||  |||||| |    
T  32461648 tgttgagtcacgaccaggtcgctctctttaagacgttttgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgcctccaggataaaaca 32461549  T
Q  453 agttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaat 519  Q
    |||||| || |||||  ||| ||||||  |||| | ||||| ||||||||||| ||| ||| |||||    
T  32461548 agttcagctgcaactgtgcggttaactactgcactgtagaaaaccgttcgagaattacaccttcaat 32461482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 339 - 467
Target Start/End: Original strand, 41996647 - 41996775
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | | | ||| |||||||||||||||| |||||| | |||||||| |||  | ||||||||||||  ||||    
T  41996647 cgaagttgttactaggttgagtcacgaccaggttgctctctttaagacgtttcgtggcactgcccaaaattgtgtaagacagactatcaaccacgccgcc 41996746  T
Q  439 tccaaaataaaataagttcaactacaact 467  Q
    ||||  |||||| |||  |||||||||||    
T  41996747 tccaggataaaacaagcccaactacaact 41996775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 339 - 467
Target Start/End: Original strand, 42001416 - 42001544
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| ||| |||||||||||||||| |||||| | |||||||| |||  | ||||||||||||  ||||    
T  42001416 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgtaagacagactatcaaccacgccgcc 42001515  T
Q  439 tccaaaataaaataagttcaactacaact 467  Q
    ||||  |||||| |||  || ||||||||    
T  42001516 tccaggataaaacaagcccagctacaact 42001544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 291 - 442
Target Start/End: Complemental strand, 15415042 - 15414891
Alignment:
Q  291 attgttgtttttgaatttccaaattctattttgaaaaagaatatatatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgttt 390  Q
    ||||||| ||||| ||||||||||| || ||||||| ||||||||||  ||||||||||||  ||| |||||||||  || || ||| |||||| |||||    
T  15415042 attgttggttttggatttccaaattttactttgaaatagaatatatacggaagttgttacttggttgagtcacgactagaacgctctctttaagtcgttt 15414943  T
Q  391 cgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcctcca 442  Q
     ||| |||||| | ||||||||  ||| | | ||||||||||  ||||||||    
T  15414942 tgtggcactgcccaaaattgtgtgaggcagaatatcaaccacgccgcctcca 15414891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 379 - 545
Target Start/End: Complemental strand, 35679948 - 35679783
Alignment:
Q  379 tttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcctccaaaataaaataagttcaactacaactacgcgcttaac 478  Q
    |||||||||||||||| |||||    ||||||||||||| | ||||||||||||  ||||||||  |||||| ||| ||||||||||||  ||  |||||    
T  35679948 tttaagacgtttcgtggcactgtcaaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaacaagctcaactacaactgtgcagttaac 35679849  T
Q  479 ttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaaccactcttcaata 545  Q
     | |||||| ||||| | ||||||||| ||| |||||||| | || || ||| ||||||||| ||||    
T  35679848 -tatgcattgtagaaaatcgttcgagaattacaccctcaaatatggtactaagaccactctttaata 35679783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 339 - 545
Target Start/End: Complemental strand, 37248908 - 37248703
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| ||| |||||||| ||||||| |||| |   ||||||||||||| | ||||||||||||  ||||    
T  37248908 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacatttcgtggcactacctaaaattgtgcaaggcagactatcaaccacgccgcc 37248809  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaaccactc 538  Q
    ||||  |||||| |||  || || |||||  ||| |||| |  || | ||||||| ||||||||||| ||| |||||||| | || || ||| |||||||    
T  37248808 tccaggataaaacaagcccagctgcaactgtgcggttaa-tactgtactatagaaaaccgttcgagaattacaccctcaaatatggtactaagaccactc 37248710  T
Q  539 ttcaata 545  Q
    || ||||    
T  37248709 tttaata 37248703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 339 - 519
Target Start/End: Complemental strand, 12045252 - 12045072
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | |||  || |||||||||||||||| |||||| | ||||||||||||  | |||||| |||||  ||||    
T  12045252 cgaagttgttactaggttgagtcacgaccaggtcgccctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcgaccacgccgcc 12045153  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaat 519  Q
    ||||  |||||| |||   | ||||||||  ||| ||||||  |||| | ||||  ||||||||||| ||| ||| |||||    
T  12045152 tccaggataaaacaagcatagctacaactgtgcggttaactactgcactgtagactaccgttcgagaattacaccttcaat 12045072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 339 - 467
Target Start/End: Original strand, 36428691 - 36428819
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| ||| |||||||||||| | |  ||||| | ||||||||||||| | ||||||||||||  ||||    
T  36428691 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgttttgcggaactgcccaaaattgtgcaaggcagactatcaaccacgccgcc 36428790  T
Q  439 tccaaaataaaataagttcaactacaact 467  Q
    ||||  |||||| |||  || ||||||||    
T  36428791 tccaggataaaacaagcccagctacaact 36428819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 340 - 467
Target Start/End: Complemental strand, 12502011 - 12501884
Alignment:
Q  340 gaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcct 439  Q
    ||||||||||||| ||| ||||| |||| | ||| ||| |||||||||||||||| |||||| | |||||||||||   | ||||||||||||  |||||    
T  12502011 gaagttgttactaggttgagtcatgaccaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaaacagactatcaaccacgccgcct 12501912  T
Q  440 ccaaaataaaataagttcaactacaact 467  Q
    |||  |||||| |||  || ||||||||    
T  12501911 ccaggataaaacaagcccagctacaact 12501884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 336 - 454
Target Start/End: Original strand, 40147874 - 40147992
Alignment:
Q  336 tatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatc 435  Q
    |||||||||||||| || ||| ||||| || | | ||| ||| ||||||| |||||||| |||||| | ||||||||||||  | ||||||||||||  |    
T  40147874 tatcgaagttgttattaggttgagtcatgatcaggtcgctctctttaagatgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgcc 40147973  T
Q  436 gcctccaaaataaaataag 454  Q
    |||||||  ||||||||||    
T  40147974 gcctccaggataaaataag 40147992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 432
Target Start/End: Complemental strand, 37652943 - 37652850
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccac 432  Q
    ||||||||||| || ||| |||||||| | | ||| ||| ||||||||||||||||||| ||  | ||||||||||||| | ||||||||||||    
T  37652943 cgaagttgttattaggttgagtcacgatcaggtcgctctctttaagacgtttcgtgacattgtccaaaattgtgcaaggcagactatcaaccac 37652850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 467
Target Start/End: Complemental strand, 12102944 - 12102816
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||  | ||| ||| |||||||| ||| ||| |||||  | ||||||||||||| | ||||||||||||| || |    
T  12102944 cgaagttgttactaggttgagtcacgactaggtcgctctctttaagactttttgtggcactggccaaaattgtgcaaggaagactatcaaccacaccgtc 12102845  T
Q  439 tccaaaataaaataagttcaactacaact 467  Q
     |||  |||||| |||  |||||||||||    
T  12102844 accaggataaaacaagaccaactacaact 12102816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 505
Target Start/End: Complemental strand, 6155532 - 6155366
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||| ||||||||| ||| |||||||| | | ||| ||| |||||||||||||||| |||||  | ||||| | ||||  | ||||||||||||| ||||    
T  6155532 cgaaattgttactaggttgagtcacgatcaggtcgctctctttaagacgtttcgtggcactgtccaaaattttacaagacagactatcaaccacaccgcc 6155433  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgaga 505  Q
    ||||  |||||| |||  || ||||||||   || ||||||  |||| | ||||| |||||||||||    
T  6155432 tccaggataaaacaagcccagctacaactgttcgattaactactgcactgtagaaaaccgttcgaga 6155366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 546
Target Start/End: Complemental strand, 20181171 - 20180969
Alignment:
Q  344 ttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcctccaa 443  Q
    |||||| || ||| |||||||||| | ||  ||| |||||||||||||||| || ||  | ||||| ||||||  | ||||| ||||||  | ||||||     
T  20181171 ttgttattaggttgagtcacgaccaggtcactctctttaagacgtttcgtggcattgtccaaaattatgcaagacagactattaaccacgccacctccat 20181072  T
Q  444 aataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaaccactcttcaa 543  Q
     |||||| ||| |||||||||| |  ||| ||||||  |||| | ||||| || |||||||||||| |||||||| | |||||  || ||||||||| ||    
T  20181071 gataaaacaagctcaactacaattgtgcggttaactactgcactgtagaaaactgttcgagatttacaccctcaaatatgataccaagaccactctttaa 20180972  T
Q  544 tat 546  Q
    |||    
T  20180971 tat 20180969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 413
Target Start/End: Original strand, 9911106 - 9911209
Alignment:
Q  310 caaattctattttgaaaaagaatatatatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaatt 409  Q
    |||||||| |||||| | ||||||| || |||||||||||||| ||| ||| | |||    |||||||||||||||| ||| ||| ||||| || |||||    
T  9911106 caaattctcttttgatagagaatatctaccgaagttgttactaggttgagttaggacaatgtcgttctttttaagacattttgtggcactgttcaaaatt 9911205  T
Q  410 gtgc 413  Q
    ||||    
T  9911206 gtgc 9911209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 339 - 505
Target Start/End: Complemental strand, 10000 - 9834
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| ||| |||||||||||||||| |||||| | ||||||||||||| | ||||||||||||  ||||    
T  10000 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcc 9901  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgaga 505  Q
    ||||  |||||| |||  || ||||||||   || ||||||  |||| | ||||| |||||||||||    
T  9900 tccaggataaaacaagcccagctacaactgttcgattaactactgcactgtagaaaaccgttcgaga 9834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 336 - 518
Target Start/End: Complemental strand, 19799129 - 19798947
Alignment:
Q  336 tatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatc 435  Q
    ||||||||||||||||| ||| |||||||| | ||||| ||| |||||||||||||||| ||||   | ||||||||||||  | ||||||||||||  |    
T  19799129 tatcgaagttgttactaggttgagtcacgatcagatcgctctctttaagacgtttcgtggcactatccaaaattgtgcaagacagactatcaaccacgcc 19799030  T
Q  436 gcctccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaa 518  Q
    |||||||  |||||| |||  || ||||||||  ||| ||||||  |||| | ||||| ||||||||||||||| ||| ||||    
T  19799029 gcctccaggataaaacaagcccagctacaactgtgcggttaactactgcactgtagaaaaccgttcgagatttacaccttcaa 19798947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 324 - 465
Target Start/End: Original strand, 11806326 - 11806467
Alignment:
Q  324 aaaaagaatatatatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaact 423  Q
    ||||| ||||| |||||||||||||| || ||| |||||| ||| ||||| ||| ||||||| ||||||||||||||| | || | || ||||| | |||    
T  11806326 aaaaaaaatatctatcgaagttgttattaggttgagtcacaaccagatcgctctctttaagatgtttcgtgacactgcgcaaagtggtacaaggcagact 11806425  T
Q  424 atcaaccacatcgcctccaaaataaaataagttcaactacaa 465  Q
    |||||||||  ||||| || ||||||| ||||||||||||||    
T  11806426 atcaaccacgccgccttcagaataaaagaagttcaactacaa 11806467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 336 - 518
Target Start/End: Complemental strand, 33301296 - 33301114
Alignment:
Q  336 tatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatc 435  Q
    |||| ||||||||||||  || | |||||||| | ||||||| |||||||||||||||| |||||| | ||||||||||||  | ||||||||||||  |    
T  33301296 tatcaaagttgttactagcttgaatcacgaccaggtcgttctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgcc 33301197  T
Q  436 gcctccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaa 518  Q
    |||||||  |||||| || |||| ||||||||  ||| ||||||  |||| | ||||| || |||||||| ||| ||| ||||    
T  33301196 gcctccaggataaaacaatttcatctacaactgtgcggttaactactgcactgtagaaaactgttcgagaattacaccttcaa 33301114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 339 - 545
Target Start/End: Original strand, 38620675 - 38620880
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    ||||||| ||| || ||| |||| ||||| ||||  ||| |||||||||||||||| || ||  | ||||||||||||| | ||||||||| ||  ||||    
T  38620675 cgaagttattattaggttgagtcgcgaccagatcactctctttaagacgtttcgtg-cattgtccaaaattgtgcaaggcagactatcaactacgccgcc 38620773  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaaccactc 538  Q
    ||||| |||||| |||| |||||||||||  ||| ||||||  |||||| ||||| || ||| |||||||| ||||| || | || |||||| |||||||    
T  38620774 tccaagataaaacaagtccaactacaactgtgcggttaactactgcattgtagaaaactgtttgagatttacaccctaaaatatggtattaagaccactc 38620873  T
Q  539 ttcaata 545  Q
    || ||||    
T  38620874 tttaata 38620880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 312 - 432
Target Start/End: Original strand, 12259951 - 12260071
Alignment:
Q  312 aattctattttgaaaaagaatatatatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgt 411  Q
    ||||||||||||||||| ||||| ||  ||||||||||||  ||| || |||||||   ||| ||| ||||||||||||||||||||||| | |||||||    
T  12259951 aattctattttgaaaaataatatctactgaagttgttacttggttgagacacgaccatgtcgctctctttaagacgtttcgtgacactgcccaaaattgt 12260050  T
Q  412 gcaaggtaaactatcaaccac 432  Q
    |||||  | ||||||||||||    
T  12260051 gcaagacagactatcaaccac 12260071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 339 - 467
Target Start/End: Complemental strand, 51041574 - 51041448
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| |||||| ||||||||||||| |||||| | ||||||||||||| | ||||||||||||  ||||    
T  51041574 cgaagttgttactaagttgagtcacgaccaggtcgctctttt-aagacgtttcgtggcactgccc-aaattgtgcaaggcagactatcaaccacgccgcc 51041477  T
Q  439 tccaaaataaaataagttcaactacaact 467  Q
    ||||| |||||| |||  || ||||||||    
T  51041476 tccaagataaaacaagcccagctacaact 51041448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 339 - 545
Target Start/End: Complemental strand, 16649725 - 16649520
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| ||| |||||||||||| ||| |||||  | |||||||||||| || ||||||||||||  ||||    
T  16649725 cgaagttgttactaagttgagtcacgaccaggtcgctctctttaagacgttt-gtggcactgtccaaaattgtgcaagatagactatcaaccacgccgcc 16649627  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaaccactc 538  Q
    |||   |||||| |||| || ||||||||  | | ||||||  |||| | ||||| || |||||||| ||| |||||||| | || || ||| |||||||    
T  16649626 tccgggataaaacaagtccagctacaactgtgtggttaactactgcactgtagaaaactgttcgagaattacaccctcaaatatggtactaataccactc 16649527  T
Q  539 ttcaata 545  Q
    || ||||    
T  16649526 tttaata 16649520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 339 - 509
Target Start/End: Original strand, 40165962 - 40166132
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| ||||||||||   ||| ||| |||||||||||||||| |||||| | ||||||||||||| | |||| |||| ||  ||||    
T  40165962 cgaagttgttactaggttgagtcacgaccatgtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactaacaacaacgccgcc 40166061  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagattta 509  Q
    || |  |||||| |||  ||||||||||||  || ||||||  |||| | ||||| ||||||||| |||||    
T  40166062 tctaggataaaacaagcacaactacaactatacgattaactactgcactgtagaaaaccgttcgaaattta 40166132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 339 - 432
Target Start/End: Complemental strand, 23192930 - 23192837
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccac 432  Q
    |||||||||||||| ||| |||||||||| | ||| ||| |||||||||||||||| |||||| | ||||||| ||||| | ||||||||||||    
T  23192930 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtacaaggcagactatcaaccac 23192837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 339 - 467
Target Start/End: Complemental strand, 26927835 - 26927707
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||    ||| ||| |||||||||||||||| || ||| | ||||||||||||| | ||||||||||||  ||||    
T  26927835 cgaagttgttactaggttgagtcacgactaagtcgctctctttaagacgtttcgtggcattgcccaaaattgtgcaaggcagactatcaaccacgccgcc 26927736  T
Q  439 tccaaaataaaataagttcaactacaact 467  Q
    || ||||||||| |||  || ||||||||    
T  26927735 tctaaaataaaacaagcccagctacaact 26927707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 347 - 467
Target Start/End: Complemental strand, 47451330 - 47451210
Alignment:
Q  347 ttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcctccaaaat 446  Q
    |||||| ||| |||||||||| | ||| ||| ||||||||||||| || ||||||   ||||||||||||  | ||||||||||||  ||||||||| ||    
T  47451330 ttactaggttgagtcacgaccaggtcgctctctttaagacgtttcatggcactgccaaaaattgtgcaagacagactatcaaccacgccgcctccaagat 47451231  T
Q  447 aaaataagttcaactacaact 467  Q
    |||| ||| ||||||||||||    
T  47451230 aaaacaagctcaactacaact 47451210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 339 - 430
Target Start/End: Original strand, 3094096 - 3094187
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaacc 430  Q
    |||||||||||||| ||| |||||||||| | ||| ||| ||||||||||||| || |||||| | ||||||||||||| | ||||||||||    
T  3094096 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcatggcactgcccaaaattgtgcaaggcagactatcaacc 3094187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 326 - 458
Target Start/End: Original strand, 8900223 - 8900355
Alignment:
Q  326 aaagaatatatatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaa-ttgtgcaaggtaaacta 424  Q
    ||||||||| || |||||||||||||| ||| ||||||||||  |||| ||| ||||| |||||| ||||||||| |||||| ||||||||   | ||||    
T  8900223 aaagaatatctaccgaagttgttactaggttgagtcacgaccatatcgctctctttaaaacgttttgtgacactg-tctaaagttgtgcaaaacatacta 8900321  T
Q  425 tcaaccacatcgcctccaaaataaaataagttca 458  Q
    |||| |||| ||||||||  |||||| |||||||    
T  8900322 tcaatcacaccgcctccaggataaaacaagttca 8900355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 339 - 455
Target Start/End: Complemental strand, 18784661 - 18784546
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||| | | ||| |||||| ||||| ||||||| ||||||   ||||||||||||| | ||||||||||||  ||||    
T  18784661 cgaagttgttactaggttgagtcacgatcaggtcgctctttt-aagacatttcgtggcactgcctaaaattgtgcaaggcagactatcaaccacgccgcc 18784563  T
Q  439 tccaaaataaaataagt 455  Q
    |||| ||||||| ||||    
T  18784562 tccagaataaaacaagt 18784546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 339 - 415
Target Start/End: Original strand, 25855153 - 25855229
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaa 415  Q
    |||||||||||||| ||| |||||||||| | ||| ||| |||||||||||||||| |||||| | |||||||||||    
T  25855153 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaa 25855229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 408 - 518
Target Start/End: Original strand, 8137990 - 8138100
Alignment:
Q  408 ttgtgcaaggtaaactatcaaccacatcgcctccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatt 507  Q
    |||||||||| | ||||||||||| ||||||||||  |||||| ||| ||| ||||||||  ||| ||||||  |||| | ||||| ||||||||||| |    
T  8137990 ttgtgcaaggcagactatcaaccatatcgcctccaggataaaacaagctcagctacaactgtgcggttaactactgcaatgtagaaaaccgttcgagaat 8138089  T
Q  508 tataccctcaa 518  Q
    || ||||||||    
T  8138090 tacaccctcaa 8138100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 432
Target Start/End: Original strand, 10135438 - 10135531
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccac 432  Q
    |||||||||||||| ||| |||||||||| | ||| ||| |||||||||||||||| |||| |   ||||||||||||| | || |||||||||    
T  10135438 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcactacctaaaattgtgcaaggcagacaatcaaccac 10135531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 432
Target Start/End: Original strand, 10140071 - 10140164
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccac 432  Q
    |||||||||||||| ||| |||||||| | | ||| ||| ||||| |||||||||| |||| ||| ||||||||||||| | || |||||||||    
T  10140071 cgaagttgttactaggttgagtcacgatcaggtcgctctctttaacacgtttcgtggcactactcaaaattgtgcaaggcagacaatcaaccac 10140164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 379 - 416
Target Start/End: Complemental strand, 33380993 - 33380956
Alignment:
Q  379 tttaagacgtttcgtgacactgctctaaattgtgcaag 416  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  33380993 tttaagacgtttcgtgacactgctcaaaattgtgcaag 33380956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 400
Target Start/End: Original strand, 16832085 - 16832144
Alignment:
Q  341 aagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactg 400  Q
    ||||||||||||| || |||||||||| | ||| ||| ||||||||||| ||||||||||    
T  16832085 aagttgttactatattgagtcacgaccaggtcgctctctttaagacgttccgtgacactg 16832144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 442
Target Start/End: Complemental strand, 47455499 - 47455396
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    ||||||||||| || ||| |||||||||| | ||| ||| |||||||||||||||| || ||  | ||||||||||||  | | ||||||||||  ||||    
T  47455499 cgaagttgttattaggttgagtcacgaccaggtcgctctctttaagacgtttcgtggcaatgtccaaaattgtgcaagacagattatcaaccacgccgcc 47455400  T
Q  439 tcca 442  Q
    ||||    
T  47455399 tcca 47455396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 432
Target Start/End: Complemental strand, 2493890 - 2493838
Alignment:
Q  379 tttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccac 432  Q
    |||||||||||||||| |||||| | ||||||||||| | ||||||||||||||    
T  2493890 tttaagacgtttcgtggcactgcccaaaattgtgcaa-gcaaactatcaaccac 2493838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 465
Target Start/End: Original strand, 16035575 - 16035716
Alignment:
Q  324 aaaaagaatatatatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaact 423  Q
    |||| |||||| || | |||||||||||| ||| |||||||||| | |||  || ||||| |||||||||| |||||  | || |||||||||  | | |    
T  16035575 aaaatgaatatctaccaaagttgttactaggttgagtcacgaccaggtcgccctctttaacacgtttcgtggcactgtccaaagttgtgcaagacagatt 16035674  T
Q  424 atcaaccacatcgcctccaaaataaaataagttcaactacaa 465  Q
    |||||||||  ||||||||  |||||| ||| ||| ||||||    
T  16035675 atcaaccacgccgcctccaggataaaacaagctcatctacaa 16035716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 416
Target Start/End: Complemental strand, 39588480 - 39588403
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaag 416  Q
    |||| ||||||||| ||| |||||||| | | ||| ||| |||||||||||||||| |||||  | ||||||||||||    
T  39588480 cgaaattgttactaggttaagtcacgatcaggtcgctctctttaagacgtttcgtggcactgtccaaaattgtgcaag 39588403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 340 - 512
Target Start/End: Original strand, 35617 - 35789
Alignment:
Q  340 gaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcct 439  Q
    ||||||||||||| ||| ||| ||||||    || ||| ||||||||||||||||||||||  | ||||||||||||| | ||||||||||||  |||||    
T  35617 gaagttgttactaggttaagttacgaccatgccgctctctttaagacgtttcgtgacactggccaaaattgtgcaaggcagactatcaaccacgccgcct 35716  T
Q  440 ccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttatac 512  Q
    |||  |||||| |||| || ||||||||  ||| ||||||  |||| | ||||| | ||||||||||||||||    
T  35717 ccaggataaaacaagtccagctacaactgtgcggttaactactgcactgtagaaaatcgttcgagatttatac 35789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 339 - 467
Target Start/End: Original strand, 4056 - 4184
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| ||| |||||||| ||||||| |||||| | ||||||||||||| | ||||||||||||  ||||    
T  4056 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacatttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcc 4155  T
Q  439 tccaaaataaaataagttcaactacaact 467  Q
    ||||  |||||| |||  || ||||||||    
T  4156 tccaggataaaacaagcccagctacaact 4184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 305 - 518
Target Start/End: Original strand, 255765 - 255978
Alignment:
Q  305 atttccaaattctattttgaaaaagaatatatatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctct 404  Q
    |||||||||||||||| ||||| ||||||| || | || ||||||||||||| || ||||||| | ||  ||| ||||||| |||||||| |||| | |     
T  255765 atttccaaattctattgtgaaagagaatatctaccaaatttgttactatgttaagacacgaccaggtcactctctttaagaggtttcgtggcactaccca 255864  T
Q  405 aaattgtgcaaggtaaactatcaaccacatcgcctccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgag 504  Q
    ||||||||||||  | ||||||||| |   ||||||||  |||||| |||| || ||||||||  | | ||||||  |||| | ||||| ||||||||||    
T  255865 aaattgtgcaagacatactatcaactatgccgcctccaggataaaacaagtccagctacaactgtgtggttaactactgcactgtagaaaaccgttcgag 255964  T
Q  505 atttataccctcaa 518  Q
      ||| ||||||||    
T  255965 gattacaccctcaa 255978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 386
Target Start/End: Original strand, 3924 - 4020
Alignment:
Q  291 attgttgtttttgaatttccaaattctatttt-gaaaaagaatatatatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagac 386  Q
    ||||| || ||||||||| ||||||||||||| |||||||||||| || |||||||||||||| ||| ||||||||||  |||| ||| ||||||||    
T  3924 attgtcgtatttgaattttcaaattctatttttgaaaaagaatatctaccgaagttgttactaggttgagtcacgaccatatcgctctctttaagac 4020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 339 - 519
Target Start/End: Original strand, 83048 - 83228
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||||||||||||| ||| |||||||||| | ||| ||| ||||||||||||||||||||  | | ||||| ||||||| | |||||||||||   ||||    
T  83048 cgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttcgtgacaccacccaaaattatgcaaggcagactatcaaccatgccgcc 83147  T
Q  439 tccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaat 519  Q
    ||||  |||||| ||| ||| || |||||  ||| ||||||  |||| | ||||| ||| ||||||| ||| ||| |||||    
T  83148 tccaggataaaacaagctcagctgcaactgtgcggttaactactgcactgtagaaaacctttcgagaattacaccttcaat 83228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 306 - 416
Target Start/End: Original strand, 15233 - 15343
Alignment:
Q  306 tttccaaattctattttgaaaaagaatatatatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctcta 405  Q
    |||||||||||||||||  || | ||||| || |||||||||||||| ||| ||||||||||  |||  || |||||||| |||||||  |||||||| |    
T  15233 tttccaaattctattttttaagaaaatatctaccgaagttgttactaggttgagtcacgaccatatcactccttttaagatgtttcgtagcactgctcaa 15332  T
Q  406 aattgtgcaag 416  Q
    |||||||||||    
T  15333 aattgtgcaag 15343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 379 - 467
Target Start/End: Original strand, 13294 - 13382
Alignment:
Q  379 tttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcctccaaaataaaataagttcaactacaact 467  Q
    |||||||||||| |||||||||| | ||||||| ||||||| |||||||||||    |||||||| ||| || ||||||||||||||||    
T  13294 tttaagacgtttggtgacactgcccaaaattgttcaaggtagactatcaaccatggtgcctccaagatacaacaagttcaactacaact 13382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2020 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold2020
Description:

Target: scaffold2020; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 305 - 467
Target Start/End: Original strand, 317 - 481
Alignment:
Q  305 atttccaaattctattttgaaaaagaatatatatcgaagttgt---tactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgc 401  Q
    ||||| ||||||| |||||||||||||||| || |||||||||   ||||| ||| |||||||||    ||| | ||||||||||||||| || || ||     
T  317 atttcgaaattct-ttttgaaaaagaatatctaccgaagttgtaattactaggttgagtcacgactatgtcgctttttttaagacgtttcatggcattgt 415  T
Q  402 tctaaattgtgcaaggtaaactatcaaccacatcgcctccaaaataaaataagttcaactacaact 467  Q
     | || |||||||||  | |||||||||||| |||||||||  |||||| ||| ||| ||||||||    
T  416 ccaaagttgtgcaagacacactatcaaccacgtcgcctccaggataaaacaagctcagctacaact 481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 305 - 467
Target Start/End: Complemental strand, 165178 - 165014
Alignment:
Q  305 atttccaaattctattttgaaaaagaatatatatcgaagttgt---tactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgc 401  Q
    ||||| ||||||| |||||||||||||||| || |||||||||   ||||| ||| |||||||||    ||| | ||||||||||||||| || || ||     
T  165178 atttcgaaattct-ttttgaaaaagaatatctaccgaagttgtaattactaggttgagtcacgactatgtcgctttttttaagacgtttcatggcattgt 165080  T
Q  402 tctaaattgtgcaaggtaaactatcaaccacatcgcctccaaaataaaataagttcaactacaact 467  Q
     | || |||||||||  | |||||||||||| |||||||||  |||||| ||| ||| ||||||||    
T  165079 ccaaagttgtgcaagacacactatcaaccacgtcgcctccaggataaaacaagctcagctacaact 165014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 546
Target Start/End: Original strand, 25378 - 25588
Alignment:
Q  336 tatcgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatc 435  Q
    ||||||||||||||||| ||| |||||| |   | ||  ||| ||||||||||| |||||||||||   ||||||||||||  | ||||||||||||  |    
T  25378 tatcgaagttgttactaggttgagtcacaattaggtcactctctttaagacgttacgtgacactgcgtaaaattgtgcaagacagactatcaaccacgcc 25477  T
Q  436 gcctccaaaataaaataagttcaactacaactacgcgcttaacttttgcattatagaagaccgttcgagatttataccctcaattgtgatattaaaacca 535  Q
    || ||||  |||||| |||  |||||||||||  ||| ||||||  | || | ||||| ||||||||||| ||| | | |||| | || || ||| ||||    
T  25478 gcgtccaggataaaacaagcccaactacaactgtgcggttaactactacactgtagaaaaccgttcgagacttacatcttcaaatatggtactaagacca 25577  T
Q  536 ctcttcaatat 546  Q
    ||||| |||||    
T  25578 ctctttaatat 25588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 442
Target Start/End: Complemental strand, 166199 - 166096
Alignment:
Q  339 cgaagttgttactatgtttagtcacgacccgatcgttctttttaagacgtttcgtgacactgctctaaattgtgcaaggtaaactatcaaccacatcgcc 438  Q
    |||| ||| ||||| ||| |||||| ||| | ||| ||| |||||||||||||||| ||||||   ||||||||||||  | ||||||||||||  ||||    
T  166199 cgaaattgatactaggttgagtcacaaccaggtcgctctctttaagacgtttcgtggcactgccaaaaattgtgcaagacatactatcaaccacgccgcc 166100  T
Q  439 tcca 442  Q
    ||||    
T  166099 tcca 166096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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