View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623_2D_low_29 (Length: 544)
Name: NF1623_2D_low_29
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 1e-98; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 83 - 321
Target Start/End: Complemental strand, 39928194 - 39927951
Alignment:
| Q |
83 |
taactttaattatgaccc-attatgataaaataattgaaattacagcaataatcaagtcttatcacactaagtgaagtcaacaacatggatcaaatgatg |
181 |
Q |
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| T |
39928194 |
taactttaattatgtccccattataataaaataattaaaattacaacaataatcaagtcttattacaccaagtgaagtcaacaacatggatcaaatgatg |
39928095 |
T |
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| Q |
182 |
ttcgatttttcttttgattttcattattggtggtcttcaccatctctata----tatagggcataccacattgtagatgtgactcttgttttttgttttg |
277 |
Q |
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| T |
39928094 |
ttcgatttttcttttgattttcattattggtggtcttcaccatctctatatatatatagggcataccacattgtagatgtgactcttgttttttgttttg |
39927995 |
T |
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| Q |
278 |
tattcttcttctttagcacatcttctgctaggtttggattgaaa |
321 |
Q |
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| T |
39927994 |
tattgttcttctttagcacatcttctgttaagtttggattgaaa |
39927951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 318 - 535
Target Start/End: Complemental strand, 39927922 - 39927705
Alignment:
| Q |
318 |
gaaaatacaacaagaaaagttgtcttttcttgtagcagtatgtgcgctgcgcgaggcgaatggcagttgacagggcgaagatgctctctacccatgtgca |
417 |
Q |
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| T |
39927922 |
gaaaatacaacaagaaaagttgtattttcttgtagcagtatgtgcgctgcgcgaggcgcatggcagctgacagggcgaaaatgctctctacccatgtgca |
39927823 |
T |
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| Q |
418 |
tggggtgcgtggcctctgctctaagtgtggattttacctttttcttcattattcgggtgttttcttcctctaacttgttattggaatttgggatagaatt |
517 |
Q |
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| T |
39927822 |
tggggtgcgtggcctctgctctaagtgcgaattttacctttttcttcattcttcgggtgttttcttcctctgacttgttattgaaatttgggatagaatt |
39927723 |
T |
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| Q |
518 |
tcctcaacatgtgatgtc |
535 |
Q |
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| T |
39927722 |
tcctcaacatgtaatgtc |
39927705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 39928262 - 39928224
Alignment:
| Q |
19 |
gtgtttgcacgggtcacttacatttttgtgtatgttttg |
57 |
Q |
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| T |
39928262 |
gtgtttgcatgggtcacttacatttttgtgtatgttttg |
39928224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 135 - 177
Target Start/End: Complemental strand, 1704898 - 1704856
Alignment:
| Q |
135 |
caagtcttatcacactaagtgaagtcaacaacatggatcaaat |
177 |
Q |
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| T |
1704898 |
caagtcttatcacactaagtggggtcagcaacatggatcaaat |
1704856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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