View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623_2D_low_31 (Length: 533)
Name: NF1623_2D_low_31
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_low_31 |
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| [»] scaffold0632 (2 HSPs) |
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| [»] scaffold0006 (2 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 129 - 447
Target Start/End: Complemental strand, 21824871 - 21824553
Alignment:
| Q |
129 |
atcttacgtgtatgtgtagtgaatcattgcatttgacctagccatacttgataagaattgaccaatgagatttaaggataattatttactctcctcctca |
228 |
Q |
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| T |
21824871 |
atcttacgtgtatgtgtagtgaatcattgcatttgacctagccatacttgataagaattgaccaatgagatttaatgataattatttactctcctcctca |
21824772 |
T |
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| Q |
229 |
tcatatgctaatgttaattgtggagtattagaaaataaaagacattaaagtagcaattgatatccattattacggttactttgttgactatagaaaccta |
328 |
Q |
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| T |
21824771 |
tcatatgctaatgttaattgtggagtattagaaaataaaagacattaaagtagcaattgatatccattattacggttactttgttgactatagaaaccta |
21824672 |
T |
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| Q |
329 |
tcatattatcattttttgttccgacgacagtttttgtgatgttattagattcacttgatcataggtttgttacctgtatatatatgtaactccttgtaag |
428 |
Q |
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| T |
21824671 |
tcatattatcagtttttgttccgacgatagtttttgtgatgttattagattcacttgatcataggtttgttacctgtatatatatgtaactccttgtaag |
21824572 |
T |
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| Q |
429 |
caatgctatccaacctttt |
447 |
Q |
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| T |
21824571 |
caatgctatccaacctttt |
21824553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 21824998 - 21824922
Alignment:
| Q |
21 |
accacaaccacatgaaacttttccttattaaccatgcatgtg-ttttcctcattgttttgcctctagatactagtat |
96 |
Q |
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| T |
21824998 |
accacaaccacatgaaacctttccttattaaccatgcatgtgtttttcctcattgttttgcctctagatactagtat |
21824922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 451 - 511
Target Start/End: Complemental strand, 21823903 - 21823843
Alignment:
| Q |
451 |
cacccattatcgtgtaaccttgtaatttatagaatcaaagaataactctatactcccactt |
511 |
Q |
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| T |
21823903 |
cacccattatcgtgtaaccttgtaatttatagaatcaaagaataaccctatactcccactt |
21823843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0632 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0632
Description:
Target: scaffold0632; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 297 - 364
Target Start/End: Original strand, 4277 - 4344
Alignment:
| Q |
297 |
attacggttactttgttgactatagaaacctatcatattatcattttttgttccgacgacagtttttg |
364 |
Q |
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| T |
4277 |
attaaggttactttgttgactatagaaacctatcatattattagtttttggtcatacgatagtttttg |
4344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0632; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 437
Target Start/End: Original strand, 4346 - 4388
Alignment:
| Q |
395 |
ttgttacctgtatatatatgtaactccttgtaagcaatgctat |
437 |
Q |
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| T |
4346 |
ttgttacttgtatatatatgtaactccttgcaagcaatgctat |
4388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 471
Target Start/End: Complemental strand, 200934 - 200843
Alignment:
| Q |
377 |
attcacttgatcataggtttgttacctgtatatatatgtaactccttgtaagcaatgctatccaaccttttgaacacccattatcgtgtaacctt |
471 |
Q |
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| T |
200934 |
attcacttgatcataggattattacttgtatttatgtg--actccttgtaagcaatgcaattcaacc-tttgaacgcccattgtcgtgtaacctt |
200843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 379 - 505
Target Start/End: Original strand, 89525 - 89649
Alignment:
| Q |
379 |
tcacttgatcataggtttgttacctgtatatatatgtaactccttgtaagcaatgctatccaaccttttgaacacccattatcgtgtaac-cttgtaatt |
477 |
Q |
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| T |
89525 |
tcacttgatcataggattgttacttgtatttatgtg--acgccttgcaagcaatgcaatacaacctct-gaacacccattatcgtgtaacttttgtaaac |
89621 |
T |
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| Q |
478 |
tatagaatcaaagaataactctatactc |
505 |
Q |
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| T |
89622 |
tagagaaccaaagtataaccctatactc |
89649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 511
Target Start/End: Original strand, 80444 - 80507
Alignment:
| Q |
449 |
aacacccattatcgtgtaacctt-gtaatttatagaatcaaagaataactctatactcccactt |
511 |
Q |
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| T |
80444 |
aacaaccattatcgtgtagcctttgtaatttcgagaatcaaagaataaacctatactcccactt |
80507 |
T |
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