View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623_2D_low_36 (Length: 509)
Name: NF1623_2D_low_36
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_low_36 |
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| [»] scaffold0197 (1 HSPs) |
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Alignment Details
Target: scaffold0197 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 16 - 490
Target Start/End: Complemental strand, 11518 - 11035
Alignment:
| Q |
16 |
gattattctcagtgccaaatatttctaaagaaatgattttatgtatgagtatgacacttataatcttatcataaccatcataagatgtcttctttcacac |
115 |
Q |
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| T |
11518 |
gattattctcagtgccaaatatttctacagaaatgattttatgtatgagtatgacacttataatcttatcataaccatcataagatgtcttctttcacac |
11419 |
T |
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| Q |
116 |
ataatattgtagagtggaatatagataattttctctctacacacactcactagaaaaacttgaagaagggtaaatttttatcatgtcctatgcttttcta |
215 |
Q |
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| T |
11418 |
ataatattgtagagtggaatatagataattttctctctacacac--tcactagaaaaacttgaagaagggtaaatttttatcatgtcctatgcttttcta |
11321 |
T |
|
| Q |
216 |
tcacattttatccatggtcctctcaattctcattttagtgcttatgctaaaaatagaagtacaaccattatgctgaaaatagaagtacaaccatgtgcat |
315 |
Q |
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| T |
11320 |
tcacattttctccatggtcctctcaattctcattttagtgcttatgctaaaaatagaagtacaaccattatgctgaaaatagaagtacaaccatgtgcat |
11221 |
T |
|
| Q |
316 |
catcagatggtaagaatcgaagataggtcccaaactcacaataataatgaaagca-----------atatcatagcaacaacaacnnnnnnncaaggttc |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
11220 |
catcagatggtaagaatcgaagataggtcccaaactcacaataataatgaaagcaatatataatcaatatcatagcaacaacaacaaaaaaacaaggttc |
11121 |
T |
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| Q |
405 |
aaggaccagtttgattttaacaagtccttctatttgtctttatcttgaaatctatgcatccatggaccgcaaaaacttatacaccc |
490 |
Q |
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| T |
11120 |
aaggaccagtttgattttaacaagtccttctatttgtctttatcttgaaatctatgcatccatggaccgcaaaaacttatacaccc |
11035 |
T |
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