View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623_2D_low_45 (Length: 500)
Name: NF1623_2D_low_45
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_low_45 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 447; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 22 - 500
Target Start/End: Original strand, 14596530 - 14597008
Alignment:
| Q |
22 |
gccggatatgagccaaaattgttcattcctccaccattgctctaactctatgccagaccatttaacctcaagaatggcaagccccaccaagcaaacggtc |
121 |
Q |
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| T |
14596530 |
gccggatatgagccaaaattgttcattcctccaccactgctctaactctatgccagaccatttaacctcaagaatggcaagccccaccaagcacacggtc |
14596629 |
T |
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| Q |
122 |
atggtgagcaagtagattaaaaaggcgatacttagggtttgcacaataaaatatccggaaaacaatgagagtgctgggaggaagcaatacacaatgagga |
221 |
Q |
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| T |
14596630 |
atggtgagcaagtagattaaaaaggcgatacttagggtttgcacaataaaatatccggaaaacaatgagagtgctgggaggaagcaatacacaatgagga |
14596729 |
T |
|
| Q |
222 |
ggatggaggtaaaggggtagacaccaacattgaggtaagcgagacgttgtaaaatttttaggcgcttactggcgaggaatgcattgttcttggagaagaa |
321 |
Q |
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| T |
14596730 |
ggatggaggtgaaggggtagacaccaacattgaggtaagcgagacgttgtaaaagttttaggcgcttactagcgaggaatgcattgttcttggagaagaa |
14596829 |
T |
|
| Q |
322 |
aatctcaacagaacctgtggcccatcttagcacctggtgtagtcgatcagtaagattaattggtgctgatccacgaaatgcatctcgcttggttacacaa |
421 |
Q |
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| T |
14596830 |
aatctcaacagaacctgtggcccatcttagcacctggtgtagtcgatcagtaagattaattggtgcagatccacgaaatgcatctcgcttggttacacaa |
14596929 |
T |
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| Q |
422 |
tatacagaacgccatccacgattgtgcatgcggtaccctgtaaccacgtcttctgtcactgacccataaatccatccca |
500 |
Q |
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| T |
14596930 |
tatacagaacgccatccacgattgtgcatgcggtaccctgtaaccacatcctctgtcactgacccataaatccatccca |
14597008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 29 - 500
Target Start/End: Complemental strand, 14612033 - 14611562
Alignment:
| Q |
29 |
atgagccaaaattgttcattcctccaccattgctctaactctatgccagaccatttaacctcaagaatggcaagccccaccaagcaaacggtcatggtga |
128 |
Q |
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| T |
14612033 |
atgagccaaaactgttcatttctccaccattgctccaactctacaccggaccacttaacctcgagaattgcaagcgccaccaagcacacggtcatgagga |
14611934 |
T |
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| Q |
129 |
gcaagtagattaaaaaggcgatacttagggtttgcacaataaaatatccggaaaacaatgagagtgctgggaggaagcaatacacaatgaggaggatgga |
228 |
Q |
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| T |
14611933 |
gcaagtagattaaaaaggcaacactgagggtttgcacaataaaatatccagtgaacaatgagagtgccgggagaaagcaatacacaatgaggaagaggga |
14611834 |
T |
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| Q |
229 |
ggtaaaggggtagacaccaacattgaggtaagcgagacgttgtaaaatttttaggcgcttactggcgaggaatgcattgttcttggagaagaaaatctca |
328 |
Q |
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| T |
14611833 |
ggtgaaggggtagattccaacattgaggtatgcaagacgctgtaaaagttttaggcgcttactggcgaggaatgcattgttcttggagaagaaaatctca |
14611734 |
T |
|
| Q |
329 |
acagaacctgtggcccatcttagcacctggtgtagtcgatcagtaagattaattggtgctgatccacgaaatgcatctcgcttggttacacaatatacag |
428 |
Q |
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| T |
14611733 |
acagaacctgtggcccatcttagcacctggtgtagtcgatcagtaaggttaattggtgctgatccgcgaaatgcatctcgcttggtcacgcaatatacag |
14611634 |
T |
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| Q |
429 |
aacgccatccacgattgtgcatgcggtaccctgtaaccacgtcttctgtcactgacccataaatccatccca |
500 |
Q |
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| T |
14611633 |
aacgccatccacggttgtgcatgcggtaacctgtaacgacgtcctctgtcactgatccataaatccatccca |
14611562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 305 - 495
Target Start/End: Original strand, 15417030 - 15417220
Alignment:
| Q |
305 |
ttgttcttggagaagaaaatctcaacagaacctgtggcccatcttagcacctggtgtagtcgatcagtaagattaattggtgctgatccacgaaatgcat |
404 |
Q |
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||||| || ||||||||||| || || |||||||| ||||||||||| || ||||||| ||||| || ||||| || ||||||| |||||| || || | |
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| T |
15417030 |
ttgttttttgagaagaaaatttctactgaacctgttgcccatcttagaacttggtgtaaacgatcggtgagatttataggtgctgttccacggaaagcgt |
15417129 |
T |
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| Q |
405 |
ctcgcttggttacacaatatacagaacgccatccacgattgtgcatgcggtaccctgtaaccacgtcttctgtcactgacccataaatcca |
495 |
Q |
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| T |
15417130 |
ctctttttgtgatgcaatatatcgatctccatccacggttgtgcattctgtaaccagttacaacatcttctgtcactgatccataaatcca |
15417220 |
T |
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