View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623_2D_low_47 (Length: 496)
Name: NF1623_2D_low_47
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Original strand, 13481412 - 13481888
Alignment:
| Q |
1 |
aactatcatgcttcttcaaattctgctgctgctatgaactatcctttttcatcaggtaattataatggtgcaatacaaggtatgagttcaatgaatatta |
100 |
Q |
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| T |
13481412 |
aactatcatgcttcttcaaattctgctgctgctatgaactatcctttttcatcaggtaattataatggtgcaatacaaggtatgagttcaatgaatatta |
13481511 |
T |
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| Q |
101 |
atcatagcaataataatattgcttcttctattgaatcattgagttctatgaaccaagacttgcactggaagctacagcaacaaagattatctatgctttt |
200 |
Q |
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| T |
13481512 |
atcatagcaataataatattgcttcttctattgaatcattgagttctatgaaccaagacttgcactggaagctacagcaacaaagattatctatgctttt |
13481611 |
T |
|
| Q |
201 |
tggtggtggagaaaatcagaaagatacagaaaagccactacaacccattttgtttcagaatcttgaggttgcaaagcaagatgatagagctttttctgtt |
300 |
Q |
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| T |
13481612 |
tggtggtggagaaaatcagaaagatacagaaaagccactacaacccattttgtttcagaatcttgaggttgcaaagcaagatgatagagctttttctgtt |
13481711 |
T |
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| Q |
301 |
ggaaattcaagaacaaatggtggagatacagcaactgagtggttttttgggaattcttatggttcagctgctgctacaccaactgcaagtggtggagctg |
400 |
Q |
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| T |
13481712 |
ggaaattcaagaacaaatggtggagatacagcaactgagtggttttttgggaattcttatggttcagctgctgctacaccaactgcaagtggtggagctg |
13481811 |
T |
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| Q |
401 |
gacatgatagtggaagcaactggaatggtggtggtgttcatgattggaatgatgtgcaacagcaatatagtgctttg |
477 |
Q |
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| T |
13481812 |
gacatgatagtggaagcaactggaatggtggtggtgttcatggttggaatgatgtgcaacagcaatatagtgctttg |
13481888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 189
Target Start/End: Original strand, 28437815 - 28437885
Alignment:
| Q |
119 |
ttgcttcttctattgaatcattgagttctatgaaccaagacttgcactggaagctacagcaacaaagatta |
189 |
Q |
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| T |
28437815 |
ttgcttctagtattgaatcattgagttgtaggaaccaagatttgcatttgaagcttcagcagcaaagatta |
28437885 |
T |
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