View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1623_2D_low_49 (Length: 493)
Name: NF1623_2D_low_49
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_low_49 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 134 - 474
Target Start/End: Original strand, 25329540 - 25329880
Alignment:
| Q |
134 |
ataaaaatggttagtgtcatttcagatattacccggaataagtcttgaccatgatattgaaaatctataggcatctaagcccatgttggtcatgagttcg |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
25329540 |
ataaaaatggttagtgtcatttcagatattacccggaataagtcttgaccatgatattgaaaatctataggcatctaagcccatgttggccatgagttcg |
25329639 |
T |
|
| Q |
234 |
acatcttcctgcaggaattcaaggtcttgtatttgcttagtgcaatttttagatgataaacttcaaattaaaatcaatttatgtattagatgcatatata |
333 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
25329640 |
acatcttcctgcaggaaatcaaggtcttgtatttgcttagtgcaatttttaaatgataaacttcaaattaaaatcaatttatgtattagatgc----ata |
25329735 |
T |
|
| Q |
334 |
ttgtcctcgc----atatgttccttattgtccacactgaccttgtatttgtgatatccatcgcatgcaatatctccatcaccctcgtacatattcgctga |
429 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25329736 |
ttgtcctcacatatatatgttccttattgtccacactgaccttgtatttgtgatatccatcgcatgcaatatctccatcaccctcgtacatattcgctga |
25329835 |
T |
|
| Q |
430 |
aaatatacattagaataatgaaaacctgtattttaagaatgaagt |
474 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25329836 |
aaatatacattagaataatgaaaacctgtattttaagaatgaagt |
25329880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 25328851 - 25328964
Alignment:
| Q |
19 |
tggtgttgctatgttacatgttgatgttggtaacaacacttccactttgtagaagattgtttgtttggga-tgttccttgcttgataatcttatttggag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
25328851 |
tggtgttgctatgttacatgttgatgttggtaacaacacttccactttgtagaagattgtttgtttgggagtgttccttgcttgataattttatttggag |
25328950 |
T |
|
| Q |
118 |
gttcgaaggatttc |
131 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
25328951 |
gttcgaaggatttc |
25328964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 363 - 474
Target Start/End: Complemental strand, 9989097 - 9988986
Alignment:
| Q |
363 |
cactgaccttgtatttgtgatatccatcgcatgcaatatctccatcaccctcgtacatattcgctgaaaatatacattagaataatgaaaacctgtattt |
462 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
9989097 |
cactgaccttgtatttgtgatatccatcgcacgcaatatctccatcatcctcgtacatatttgctgaaaatatacattagaataaagaaaacttgtattt |
9988998 |
T |
|
| Q |
463 |
taagaatgaagt |
474 |
Q |
| |
|
|||||||||||| |
|
|
| T |
9988997 |
taagaatgaagt |
9988986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 162 - 246
Target Start/End: Original strand, 25323204 - 25323288
Alignment:
| Q |
162 |
ttacccggaataagtcttgaccatgatattgaaaatctataggcatctaagcccatgttggtcatgagttcgacatcttcctgca |
246 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
25323204 |
ttacctggaataagtcttgaccatgatattgaaaatctataggcatctaagcccatgttggccatgagttgcacatcttcctgca |
25323288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 363 - 474
Target Start/End: Complemental strand, 14332130 - 14332019
Alignment:
| Q |
363 |
cactgaccttgtatttgtgatatccatcgcatgcaatatctccatcaccctcgtacatattcgctgaaaatatacattagaataatgaaaacctgtattt |
462 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
14332130 |
cactgaccttgtatttgtgatatccatcgcacgcaatatctccatcatcctcgtacatatttgctgaagatatacattagaataaagaaaacctgtattt |
14332031 |
T |
|
| Q |
463 |
taagaatgaagt |
474 |
Q |
| |
|
|||||||||||| |
|
|
| T |
14332030 |
taagaatgaagt |
14332019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 163 - 243
Target Start/End: Original strand, 5220305 - 5220385
Alignment:
| Q |
163 |
tacccggaataagtcttgaccatgatattgaaaatctataggcatctaagcccatgttggtcatgagttcgacatcttcct |
243 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||| || | ||| |||| |||||| |||| |
|
|
| T |
5220305 |
tacctggaataagtcttgaccatgatatggaaaatctataggcatctaagcccattttagacattagttggacatcatcct |
5220385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University