View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1623_2D_low_5 (Length: 883)
Name: NF1623_2D_low_5
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_low_5 |
 | |
|
| [»] scaffold1408 (1 HSPs) |
| | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 763; Significance: 0; HSPs: 23)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 763; E-Value: 0
Query Start/End: Original strand, 19 - 865
Target Start/End: Original strand, 33057070 - 33057916
Alignment:
| Q |
19 |
caaaccttccacctcaaaaaatttaaattctatttttccaaattcatgacaggaatacccgaggtactctcggggtaagtagataatccataggtgactt |
118 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33057070 |
caaaccttccacctcaaaaaattttaattctatttttccaaattcatgacaggaatacccggggtactctcggggtaagtagataatccataggtgactt |
33057169 |
T |
|
| Q |
119 |
gatttggtggtaacaagactgagatttactggaactctcatattcaacaacctctcattggaatcaatacgcttgaaagccagatacatcaacttcgacg |
218 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| | |
|
|
| T |
33057170 |
gatttggtcgtaacaagactgagctttactggaactctcattttcaacaacctctcattggaatcaatacgcttgaaagccagattcatcaactccgagg |
33057269 |
T |
|
| Q |
219 |
aacaaaaactttcacgatagggtgccgtcgtaaatgctgcacaacatacaataccaatgatattattgtcattgtcatgcctaataggagaccggtctat |
318 |
Q |
| |
|
|| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33057270 |
aataaaaaatttcacgatagggtgccatcgtaaatgctgcacaacatacaataccaatgatattattgtcattgtcatgcctaataggagatcggtctat |
33057369 |
T |
|
| Q |
319 |
tggtattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggattaactatttgaatctcataagagtaacgtgggtttgcctta |
418 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
33057370 |
tgctattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggattaactatttgaatctcagaagaggaacgtgggtttgcctta |
33057469 |
T |
|
| Q |
419 |
atgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaatcctgtatcacaaatatagt |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||| |
|
|
| T |
33057470 |
atgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaatcctgcaccacaaaaatagt |
33057569 |
T |
|
| Q |
519 |
cgtcgtactcacgatgaacctccccagtattggtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaatatacaagttt |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33057570 |
cgtcgtactcacgatgaacctccccagtattggtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaatatacaagttt |
33057669 |
T |
|
| Q |
619 |
ggaaagcttcctcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgtatcaggcacatggctt |
718 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
33057670 |
ggatagcttcctcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgcatcaggcacatggctt |
33057769 |
T |
|
| Q |
719 |
agatagcaaaagcttatgtcaaccttacgcaaacaacataaactacgcaaggaaggcaacatatgtgatgaatcgtgagccaaaatgatccattttaggc |
818 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33057770 |
agatagcaaaagcttatgtcaaccttacgcaaacaacataaactatgcaaggaaggcaacatatgtgatgaatcgtgagccaaaatgatccattttaggc |
33057869 |
T |
|
| Q |
819 |
cagggaggtgatgtgatgcactttcacgtatatcatgctgctgcttc |
865 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33057870 |
cagggaggtgatgtgatgcactttcacgtatatcatgctgctgcttc |
33057916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 242; E-Value: 1e-133
Query Start/End: Original strand, 258 - 779
Target Start/End: Original strand, 33262357 - 33262887
Alignment:
| Q |
258 |
cacaacatacaataccaatgatattattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaact |
357 |
Q |
| |
|
||||||||| || |||||||||||||||| ||| |||||| ||||||||| |||||| ||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
33262357 |
cacaacatagaaagccaatgatattattgttattatcatgcataataggagtttggtctactggtattgaatcacccatgctctgattgttgatccaact |
33262456 |
T |
|
| Q |
358 |
tggtatttcacttcctggattaactatttgaatctcat------aag------agtaacgtgggtttgccttaatgaattgtttcatccataaaagtgtc |
445 |
Q |
| |
|
|||||||||| |||||||| |||| ||||||| ||||| ||| || | || ||| ||| | |||||||||| || ||||| ||| |||| |
|
|
| T |
33262457 |
tggtatttcatttcctggactaacaatttgaaactcatccaaataagtagggtaggattgttggtatgcttgaatgaattgtgtcgtccatgaaaatgtc |
33262556 |
T |
|
| Q |
446 |
atgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaatcctgtatcacaaatatagtcgtcgtactcacgatgaacctccccag |
545 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||| | |||| || | |||||||||| || |||| |
|
|
| T |
33262557 |
atgctactgcaacgttccctctcacccaattttggacagttgaaaatgaccaatcctgtattcaacttatactcctt---ctcacgatgatcccgcccaa |
33262653 |
T |
|
| Q |
546 |
tattggtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaggctaggtaatgt |
645 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
33262654 |
tagaggtaggagaaggaagttgaggcaaagattccaacaacctgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaggctaggtagtgt |
33262753 |
T |
|
| Q |
646 |
cacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgtatcaggcacatggcttagatagcaaaagcttatgtcaacctta |
745 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||| ||||||| |||| |||||||||||||||||||||||| ||| |
|
|
| T |
33262754 |
cacaaaatcatttccccctaaatttaatctttctagccaatgtaagcattcaattgtgccaggcacttggcgtagatagcaaaagcttatgtcaacatta |
33262853 |
T |
|
| Q |
746 |
cgcaaacaacataaactacgcaaggaaggcaaca |
779 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
|
|
| T |
33262854 |
cgcaaacaatgtaaactacgcaaggaaggcaaca |
33262887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 239 - 778
Target Start/End: Complemental strand, 33644836 - 33644288
Alignment:
| Q |
239 |
ggtgccgtcgtaaatgctgcacaacatacaataccaatgatattattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcc |
338 |
Q |
| |
|
|||||| | |||||| ||||||||||||||| |||||||||||||||| |||||||||| |||||||||| ||||||| ||||||||||||||| | |
|
|
| T |
33644836 |
ggtgccatggtaaatactgcacaacatacaaatccaatgatattattgttattgtcatgcataataggagattcgtctatttgtattgaataacccacac |
33644737 |
T |
|
| Q |
339 |
tctgattgttgatccaacttggtatttcacttcctggattaactatttgaatctcataagagtaacgtgggt------------ttgccttaatgaattg |
426 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||| | || |||||| || || | |||| ||||| |||||| ||||||||| |
|
|
| T |
33644736 |
tttgattgttgatccaacttggtatttcacttcctggagttacaatttgagtcctatcaaagtaggttgggtaggattgtaggtttgcctgaatgaattg |
33644637 |
T |
|
| Q |
427 |
tttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaatcctgtatcacaaatatagtcgtcgtac |
526 |
Q |
| |
|
| |||||||| ||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||| | || | || ||| | | |
|
|
| T |
33644636 |
tatcatccatgaaaatgtcatgctcctgcaacgttccctctcacccaattttgaacagttgaaaatgaccaatcctgaaatccagacatcgtcattctca |
33644537 |
T |
|
| Q |
527 |
tcacgatgaacctccccagtattggtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaatatacaagtttggaaagct |
626 |
Q |
| |
|
|| || | || |||| || ||||||| |||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
33644536 |
tctcgtt---cccgcccaatagtggtaggggaaggaagttgaggcaaagattccaacaacttgcagtgttccaaatttaaatatacaagtttggaaagct |
33644440 |
T |
|
| Q |
627 |
tcctcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgtatcaggcacatggcttagatagca |
726 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||| ||| |
|
|
| T |
33644439 |
tcctcaggctaggtagtgtcacaaaatagtttccccctaaatttaatctttctagcgaatgtaaacattcaattgaatcaggaacatggcttagacggca |
33644340 |
T |
|
| Q |
727 |
aaagcttatgtcaaccttacgcaaacaacataaactacgcaaggaaggcaac |
778 |
Q |
| |
|
| |||| ||||||| ||||||||||| |||| ||| ||||||| |||||| |
|
|
| T |
33644339 |
atagctaatgtcaatgctacgcaaacaatataagctatgcaaggatggcaac |
33644288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 255 - 779
Target Start/End: Original strand, 9166489 - 9167013
Alignment:
| Q |
255 |
ctgcacaacatacaataccaatgatattattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatcca |
354 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||| ||||||||| ||||||||||||| ||| | ||| ||| ||||||||||||| |
|
|
| T |
9166489 |
ctgcacaacatacaaagccaatgatattattgttattgtcatgcataataggagttaggtctattggtatcgaaccatccacgctccgattgttgatcca |
9166588 |
T |
|
| Q |
355 |
acttggtatttcacttcctggattaactatttgaatctcataagagt---aacgtgggtttgccttaatgaattgtttcatccataaaagtgtcatgctc |
451 |
Q |
| |
|
||||||||||||| ||||||| |||| ||||||||| || | ||| | |||||||||||| ||| ||||| |||||||| ||| ||||||||| |
|
|
| T |
9166589 |
acttggtatttcaattcctggcgtaacaatttgaatcctatcaaagtgggatggtgggtttgcctgaataaattgcatcatccatgaaaatgtcatgcta |
9166688 |
T |
|
| Q |
452 |
ctgcaatgttccctctcacccaattttggacagttgaaaatgagcaatcctgta-tc-acaaatatagtcgtcgtactcacgatgaacctccccagtatt |
549 |
Q |
| |
|
|||||||||||| | |||| ||||| ||||||||||||||||| ||||||||| || | ||| || | || |||| |||| || | | || | |
|
|
| T |
9166689 |
ctgcaatgttccttatcactcaattctggacagttgaaaatgaccaatcctgttgtcgagaaaaat-----ttgttctcattatgagcccactcgatagt |
9166783 |
T |
|
| Q |
550 |
ggtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaggctaggtaatgtcaca |
649 |
Q |
| |
|
| ||| ||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| || |
|
|
| T |
9166784 |
gttagaaaaaggaagttgaggcaaaaactccaacaacctgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaagctaggtagtgtcgca |
9166883 |
T |
|
| Q |
650 |
aaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgtatcaggcacatggcttagatagcaaaagcttatgtcaaccttacgca |
749 |
Q |
| |
|
|||||| ||||| |||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||| |||| |||||||| | ||||| |
|
|
| T |
9166884 |
aaatcgattccccctaagtttaatctttctagccaccgtaaacattcaattgtatcaggcaattggcttagatggcaatagctaatgtcaacttcacgca |
9166983 |
T |
|
| Q |
750 |
aacaacataaactacgcaaggaaggcaaca |
779 |
Q |
| |
|
||||| ||||||||||||||||| |||||| |
|
|
| T |
9166984 |
aacaatataaactacgcaaggaatgcaaca |
9167013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 180; E-Value: 1e-96
Query Start/End: Original strand, 257 - 779
Target Start/End: Original strand, 33304214 - 33304745
Alignment:
| Q |
257 |
gcacaacatacaataccaatgatattattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaac |
356 |
Q |
| |
|
|||||||||| || |||||||||| ||||| |||||||||| |||||||||| ||||||||| ||||||||| ||||| |||| ||||||||||||| |
|
|
| T |
33304214 |
gcacaacatagaaagccaatgatataattgttattgtcatgcataataggagatcggtctatttgtattgaatcacccacgctcttattgttgatccaaa |
33304313 |
T |
|
| Q |
357 |
ttggtatttcacttcctggattaactatttgaatctcat--aag----------agtaacgtgggtttgccttaatgaattgtttcatccataaaagtgt |
444 |
Q |
| |
|
||||||||||| |||||||| |||| ||||||||| || ||| || | ||| |||||||| |||||||||| ||| |||| ||| ||| |
|
|
| T |
33304314 |
ttggtatttcatttcctggagtaacaatttgaatccaatcaaaggacgtagggtaggattgtgagtttgcctcaatgaattgtgtcaaccatgaaaatgt |
33304413 |
T |
|
| Q |
445 |
catgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaatcctgtatcacaaat------atagtcgtcgtactcacgatgaacc |
538 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||| || || ||| | || || ||||||| || |
|
|
| T |
33304414 |
catgctactgcaacgttccctctcacccaattttggacagttgaaaatgaacaatcctgtaggccagatccagaaatatttgttgttctcacgaataa-- |
33304511 |
T |
|
| Q |
539 |
tccccagtattggtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaggctag |
638 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33304512 |
-------tattggtaggagaaggaagttgaggcaaagattccaacaacatgcaatgctgcaaatttaaatatacaagtttggaaagcttcctcaggctag |
33304604 |
T |
|
| Q |
639 |
gtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgtatcaggcacatggcttagatagcaaaagcttatgtc |
738 |
Q |
| |
|
||| |||||||||| ||||||| |||| ||||||||||||||| | | |||||||||||||| |||||| || |||||||||| ||||||||| ||||| |
|
|
| T |
33304605 |
gtagagtcacaaaattgtttccctctaagtttaatctttctagcgagtataaacattcaattgcatcaggaacttggcttagatggcaaaagctaatgtc |
33304704 |
T |
|
| Q |
739 |
aaccttacgcaaacaacataaactacgcaaggaaggcaaca |
779 |
Q |
| |
|
||| | ||||||||| ||| ||| ||||||| ||||||| |
|
|
| T |
33304705 |
aacgtctcgcaaacaaactaagctatgcaaggatggcaaca |
33304745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 248 - 779
Target Start/End: Original strand, 33387875 - 33388421
Alignment:
| Q |
248 |
gtaaatgctgcacaacatacaataccaatgatattattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgt |
347 |
Q |
| |
|
|||||| |||||||||||| || |||||||||||||||| |||||||||| ||||||| | ||||||| ||||||||| |||||| |||||||||| |
|
|
| T |
33387875 |
gtaaatactgcacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacccatgctctgattgt |
33387974 |
T |
|
| Q |
348 |
tgatccaacttggtatttcacttcctggattaactatttgaatc---tcataagagtaacg---------tgggtttgccttaatgaattgtttcatcca |
435 |
Q |
| |
|
|||||||||| |||||||||||||||| | |||| ||||||||| ||| || || | | | ||||||||||||| |||||| ||||||| |
|
|
| T |
33387975 |
tgatccaactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtcggtttgccttaataaattgtgtcatcca |
33388074 |
T |
|
| Q |
436 |
taaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaatcctgt-atca---caaatatagtcgtcgtactcacg |
531 |
Q |
| |
|
| ||| ||||||||| |||||| ||||| ||||||| ||||||||||||||||| || ||||||||| ||| |||| || | | || |||||| |
|
|
| T |
33388075 |
tgaaaatgtcatgctactgcaacactccctatcacccagttttggacagttgaaaacgatcaatcctgtgatccacccaaacttatgctt-gttctcacg |
33388173 |
T |
|
| Q |
532 |
atgaacctccccagtattggtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaatatacaagtttggaaagcttcctc |
631 |
Q |
| |
|
|||| || |||| || ||||| || ||||||||||||| ||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33388174 |
atgatcccgcccaatagtggtaagagaaggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaatatacaagtttggaaagcttcctc |
33388273 |
T |
|
| Q |
632 |
aggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgtatcaggcacatggcttagatagcaaaagc |
731 |
Q |
| |
|
| |||||||| ||||||||||||||||||| ||||||||||| ||||||| | |||||||||||||||| ||| || || || |||||| ||||||| |
|
|
| T |
33388274 |
aagctaggtagtgtcacaaaatcgtttccccctaaatttaatttttctagtgagtgtaaacattcaattgaatcgggaacttgatttagatgacaaaagc |
33388373 |
T |
|
| Q |
732 |
ttatgtcaaccttacgcaaacaacataaactacgcaaggaaggcaaca |
779 |
Q |
| |
|
| |||||||| |||||||||||| ||| ||| ||| ||| ||||||| |
|
|
| T |
33388374 |
taatgtcaactttacgcaaacaatttaagctatgcacggatggcaaca |
33388421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 160; E-Value: 8e-85
Query Start/End: Original strand, 283 - 779
Target Start/End: Original strand, 33398828 - 33399315
Alignment:
| Q |
283 |
attgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggattaact |
382 |
Q |
| |
|
||||| ||| |||||| || |||||| |||||||| ||||||||| ||||| | ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33398828 |
attgttattatcatgcatagcaggagataggtctatttgtattgaatcacccacacactgattgttgatccaacttggtatttcacttcctggaataaca |
33398927 |
T |
|
| Q |
383 |
atttgaatctcataagagtaacgtgggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggac |
482 |
Q |
| |
|
|||||| | | | | |||| || ||| |||||||||| |||||||| ||| ||||||||| |||||| ||||||||||||||||||||| || |
|
|
| T |
33398928 |
atttgag------aggtggattgtggattggccagaatgaattgtatcatccatgaaaatgtcatgctactgcaacgttccctctcacccaattttgaac |
33399021 |
T |
|
| Q |
483 |
agttgaaaatgagcaatcctgtatcacaaatatagtcgtcgtactcacgatgaacctccccagtattggtaggaaaaggaagttgaggcaaagattccaa |
582 |
Q |
| |
|
|||||||||||| |||||||| | || || ||| | | || || | || |||| || ||||||| ||||||||||||||||||||||||| |
|
|
| T |
33399022 |
agttgaaaatgaccaatcctgaaatccagtcatcgtcattctcatctcgtt---cccgcccaatagtggtaggggaaggaagttgaggcaaagattccaa |
33399118 |
T |
|
| Q |
583 |
caatttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagc |
682 |
Q |
| |
|
||| ||||| || |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
33399119 |
caacttgcagtgttccaaatttaaatatacaagttcggaaagcttcctcaggctaggtagtgtcacaaaattgtttccctttaaatttaatctttctagc |
33399218 |
T |
|
| Q |
683 |
caatgtaaacattcaattgtatcaggcacatggcttagatagcaaaagcttatgtcaaccttacgcaaacaacataaactacgcaaggaaggcaaca |
779 |
Q |
| |
|
||||||||| |||||||| |||||| || |||||||||| ||||||||| |||||||| |||||||||| ||| ||| ||||||| ||||||| |
|
|
| T |
33399219 |
caatgtaaatcttcaattgcatcaggaacttggcttagattgcaaaagctaatgtcaactccacgcaaacaatctaagctatgcaaggatggcaaca |
33399315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 250 - 751
Target Start/End: Complemental strand, 31563109 - 31562596
Alignment:
| Q |
250 |
aaatgctgcacaacatacaataccaatgatattattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttg |
349 |
Q |
| |
|
|||| ||||||||||||||| |||||||||| |||| |||||||||| || |||||| |||||||||||||||| |||||| || ||||||||| |
|
|
| T |
31563109 |
aaatactgcacaacatacaaagccaatgatatcattgatattgtcatgcataggaggagagaactctattggtattgaatcacccatgctatgattgttg |
31563010 |
T |
|
| Q |
350 |
atccaacttggtatttcacttcctggattaactatttgaatctcata---------agagtaac---gtgggtttgccttaatgaattgtttcatccata |
437 |
Q |
| |
|
|||||| | |||||||||||||||||| ||| || |||| ||||| || ||| |||| | |||||||||||||||| ||||||| |
|
|
| T |
31563009 |
atccaattcggtatttcacttcctggaacaacaatatgaaactcatccaaataggcagggtaggagtgtggatatgccttaatgaattgtgccatccatg |
31562910 |
T |
|
| Q |
438 |
aaagtgtcatgctcctgcaatgttccctctcac------ccaattttggacagttgaaaatgagcaatcctgtatcacaaatatagtcgtcgtactcacg |
531 |
Q |
| |
|
||| |||||||||||||||||| |||||||||| ||||||| |||||||| ||||||| |||||||||| || || | || |||||| |
|
|
| T |
31562909 |
aaaatgtcatgctcctgcaatgctccctctcactctcagccaatttcggacagttaaaaatgaccaatcctgtagtccacc-at-----ttgttctcacg |
31562816 |
T |
|
| Q |
532 |
atgaacctccccagtattggtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaatatacaagtttggaaagcttcctc |
631 |
Q |
| |
|
| || || |||| || |||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
31562815 |
acgatcccgcccaatagtggtaggagaaggaagttgaggcaaagattccaacaactcgcaatgctccaaatttaaatatacaagtttggaaagcttccac |
31562716 |
T |
|
| Q |
632 |
aggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgtatcaggcacatggcttagatagcaaaagc |
731 |
Q |
| |
|
| |||||||| ||||||||||| ||||||| |||||||||||||||||||| | |||||||||||||| ||||||||| ||||||||| |||||||| |
|
|
| T |
31562715 |
aagctaggtagtgtcacaaaatagtttccccctaaatttaatctttctagcgagcttaaacattcaattgcatcaggcacttggcttagacggcaaaagc |
31562616 |
T |
|
| Q |
732 |
ttatgtcaaccttacgcaaa |
751 |
Q |
| |
|
| |||||||| |||||||| |
|
|
| T |
31562615 |
taatgtcaactgtacgcaaa |
31562596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 526 - 771
Target Start/End: Original strand, 33285626 - 33285871
Alignment:
| Q |
526 |
ctcacgatgaacctccccagtattggtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaatatacaagtttggaaagc |
625 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
33285626 |
ctcacgatgatcctccccaatattggtaggaaaaggaagttgaggcaaagattccaacaacttgcaatgctccaaatttaaatatacaagtttggacagc |
33285725 |
T |
|
| Q |
626 |
ttcctcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgtatcaggcacatggcttagatagc |
725 |
Q |
| |
|
|| ||||||||||||| ||||||||||| ||||||| |||| |||||| |||||||||||| |||||||||||||| || | ||| ||||||||| || |
|
|
| T |
33285726 |
tttctcaggctaggtagtgtcacaaaattgtttccccctaagtttaatatttctagccaatataaacattcaattgcatatgacacttggcttagacggc |
33285825 |
T |
|
| Q |
726 |
aaaagcttatgtcaaccttacgcaaacaacataaactacgcaagga |
771 |
Q |
| |
|
||||||| |||| ||| | |||||||||| |||| ||| ||||||| |
|
|
| T |
33285826 |
aaaagctaatgttaacttcacgcaaacaatataagctatgcaagga |
33285871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 543 - 777
Target Start/End: Original strand, 33410030 - 33410264
Alignment:
| Q |
543 |
cagtattggtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaggctaggtaa |
642 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
33410030 |
cagtagtggtaggaaaaggaagttgaggcaaagattccaacaacttgcaatgctgcaaatctaaatattcaagtttggaaagcttcctcaagctaggtag |
33410129 |
T |
|
| Q |
643 |
tgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgtatcaggcacatggcttagatagcaaaagcttatgtcaacc |
742 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||| ||||||||| |||||||| |||||| || ||| |||||| ||||||||| || ||||| |
|
|
| T |
33410130 |
tgtcacaaaatagtttcccgctaaatataatctttctagcgaatgtaaaccttcaattgcatcaggaacttggtttagatggcaaaagctaatatcaact |
33410229 |
T |
|
| Q |
743 |
ttacgcaaacaacataaactacgcaaggaaggcaa |
777 |
Q |
| |
|
| |||||||||| |||| ||| |||| || ||||| |
|
|
| T |
33410230 |
tgacgcaaacaatataagctatgcaatgatggcaa |
33410264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 549 - 729
Target Start/End: Original strand, 33358898 - 33359078
Alignment:
| Q |
549 |
tggtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaggctaggtaatgtcac |
648 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
33358898 |
tggtaggaaaaggaagttgaggcaaagattccaacaacttgcaatgttccaaatttaaatatacaagtttagaaagcttcctcaggctaggtagtgtcac |
33358997 |
T |
|
| Q |
649 |
aaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgtatcaggcacatggcttagatagcaaaa |
729 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||| || || || ||||||| |||||| |
|
|
| T |
33358998 |
aaaatcgtttccccctaaatttaatatttctagccaatgtaaacattcaattgcatcgggaacttgacttagatggcaaaa |
33359078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 558 - 740
Target Start/End: Original strand, 33271865 - 33272047
Alignment:
| Q |
558 |
aaggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaggctaggtaatgtcacaaaatcgtt |
657 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
33271865 |
aaggaagtcgaggcaaagattccaacaacttgcaatgttccaaatttaaatatacaagtttggaaagcttcctcaggctaggtagtgtcacaaaattgtt |
33271964 |
T |
|
| Q |
658 |
tcccgctaaatttaatctttctagccaatgtaaacattcaattgtatcaggcacatggcttagatagcaaaagcttatgtcaa |
740 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||| |||||| || |||| ||||| ||||||||| ||||||| |
|
|
| T |
33271965 |
tccccctaaatctaatctttctagccaatgtaaacattcaattgcatcaggaacttggcgtagatggcaaaagctaatgtcaa |
33272047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 258 - 682
Target Start/End: Complemental strand, 28870446 - 28870013
Alignment:
| Q |
258 |
cacaacatacaataccaatgatattattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaact |
357 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||| |||||||||| ||||||| |||||||| |||||| ||||||||||| |||||||| |
|
|
| T |
28870446 |
cacaacatacaaagccaatgatattattgttattgtcatttataataggagattcgtctatttgtattgaaccacccatgctctgattgttaatccaact |
28870347 |
T |
|
| Q |
358 |
tggtatttcacttcctggattaactatttgaatctcat----------aag--agtaacgtgggtttgccttaatgaattgtttcatccataaaagtgtc |
445 |
Q |
| |
|
||||||||||||||||||| |||| || | || | ||| ||| || | || ||| |||| ||||||||||||||||||| ||| || | |
|
|
| T |
28870346 |
tggtatttcacttcctggagtaacaatattaaacgcatccaaatagacaaggtaggattgtcggtatgcccgaatgaattgtttcatccatgaaaatgcc |
28870247 |
T |
|
| Q |
446 |
atgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaatcctgtatcacaaatatagtcgtcgtactcacgatgaacctccccag |
545 |
Q |
| |
|
||||| | ||| ||||||||||||| || ||||||||||||||||||| ||| ||||| || ||| | | ||||| || | || ||| |
|
|
| T |
28870246 |
atgctacaacaacgttccctctcacctaaatttggacagttgaaaatgatcaaacctgttctccagggata---tttgctctcacaattatcccgcccga |
28870150 |
T |
|
| Q |
546 |
tattggtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaggctaggtaatgt |
645 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||| |
|
|
| T |
28870149 |
taggggtaggagaaggaagttgaggcaaagattcaaacaacttgcaatgctccaaatttaaatattcaagtttggaaagcttcctcaggctaggcagtgt |
28870050 |
T |
|
| Q |
646 |
cacaaaatcgtttcccgctaaatttaatctttctagc |
682 |
Q |
| |
|
|||||||| ||||||| ||| ||||||||||||||| |
|
|
| T |
28870049 |
cacaaaatagtttccccgtaagtttaatctttctagc |
28870013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 255 - 391
Target Start/End: Original strand, 33285322 - 33285458
Alignment:
| Q |
255 |
ctgcacaacatacaataccaatgatattattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatcca |
354 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||| |||||||||| | |||||||||||||||| ||||| |||||||| || ||||| |
|
|
| T |
33285322 |
ctgcacaacatacaaagccaatgatattattgttattgtcatgcataataggagatctgtctattggtattgaactacccacgctctgattattaatcca |
33285421 |
T |
|
| Q |
355 |
acttggtatttcacttcctggattaactatttgaatc |
391 |
Q |
| |
|
|||||||||||||||||||||| |||| || |||||| |
|
|
| T |
33285422 |
acttggtatttcacttcctggagtaacaatatgaatc |
33285458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 314 - 505
Target Start/End: Original strand, 33271582 - 33271782
Alignment:
| Q |
314 |
tctattggtattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggattaactatttgaatctcat---aagagtaacgtgggt |
410 |
Q |
| |
|
||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||| | | || |||| ||||| || | | | |||| |
|
|
| T |
33271582 |
tctattggtatcgaatcacccatgctctgattgttgatccaacttggtatttcacttcctggagttataatatgaaactcattcaaataagattgcgggt |
33271681 |
T |
|
| Q |
411 |
ttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcac------ccaattttggacagttgaaaatgagcaatcctgt |
504 |
Q |
| |
|
||||| ||||||||||| |||||||| ||| ||||| ||| |||||| |||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
33271682 |
ttgccataatgaattgtatcatccatgaaaatgtcaagctactgcaacgttccctctcacagtcagccaattttggacagttgaaaatgaccaatcctgt |
33271781 |
T |
|
| Q |
505 |
a |
505 |
Q |
| |
|
| |
|
|
| T |
33271782 |
a |
33271782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 258 - 502
Target Start/End: Original strand, 33409709 - 33409959
Alignment:
| Q |
258 |
cacaacatacaataccaatgatattattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaact |
357 |
Q |
| |
|
|||||| ||||| ||||| |||||||||| |||||||| ||| |||||| || |||| ||||||| ||||| |||||||||||||||||||| |
|
|
| T |
33409709 |
cacaacttacaaagccaataatattattgttattgtcatttataacaggagattcatcaattgatattgaagcacccacgctctgattgttgatccaact |
33409808 |
T |
|
| Q |
358 |
tggtatttcacttcctggattaactatttgaatctcataagagtaac------gtgggtttgccttaatgaattgtttcatccataaaagtgtcatgctc |
451 |
Q |
| |
|
||||||||||||||||||| | || ||||||| | | | | | || ||||||||| |||||| ||| ||||||| ||| ||| ||||| |
|
|
| T |
33409809 |
tggtatttcacttcctggagttacaatttgaagcgccgacaatttgttgggttgttggtttgcctgaatgaaatgtgccatccatgaaattgtgatgcta |
33409908 |
T |
|
| Q |
452 |
ctgcaatgttccctctcacccaattttggacagttgaaaatgagcaatcct |
502 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
33409909 |
ctgcaacgttccctctcaaccaattttggacagttgaaaatgaacaatcct |
33409959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 419 - 499
Target Start/End: Original strand, 33285501 - 33285581
Alignment:
| Q |
419 |
atgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaat |
499 |
Q |
| |
|
||||||||| |||||||| ||| || |||||| |||||| ||||||| ||||| |||||||||||||||||||||| |||| |
|
|
| T |
33285501 |
atgaattgtatcatccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat |
33285581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 250 - 309
Target Start/End: Original strand, 33358656 - 33358715
Alignment:
| Q |
250 |
aaatgctgcacaacatacaataccaatgatattattgtcattgtcatgcctaataggaga |
309 |
Q |
| |
|
|||| ||||||||||||||| |||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
33358656 |
aaatactgcacaacatacaaaaccaatgacattattgttattgtcatgcctaataggaga |
33358715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 418 - 468
Target Start/End: Original strand, 33358799 - 33358849
Alignment:
| Q |
418 |
aatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctc |
468 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||| |||||||||| |
|
|
| T |
33358799 |
aatgaattgtttcatccatgaaagtgtcatgctactgcaacgttccctctc |
33358849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 33304050 - 33304103
Alignment:
| Q |
84 |
actctcggggtaagtagataatccataggtgacttgatttggtggtaacaagac |
137 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
33304050 |
actctcgggggaagtagattatccataggtgacttgatttggtcataacaagac |
33304103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 33387726 - 33387779
Alignment:
| Q |
84 |
actctcggggtaagtagataatccataggtgacttgatttggtggtaacaagac |
137 |
Q |
| |
|
||||||| || |||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
33387726 |
actctcgtgggaagtagattatccataggtgacttgatttggtcgtaacaagac |
33387779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 33644992 - 33644941
Alignment:
| Q |
86 |
tctcggggtaagtagataatccataggtgacttgatttggtggtaacaagac |
137 |
Q |
| |
|
||||| || |||||||| ||||||||||||||||||||||| |||| ||||| |
|
|
| T |
33644992 |
tctcgagggaagtagattatccataggtgacttgatttggtcgtaataagac |
33644941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 349 - 390
Target Start/End: Original strand, 33358714 - 33358755
Alignment:
| Q |
349 |
gatccaacttggtatttcacttcctggattaactatttgaat |
390 |
Q |
| |
|
|||||||||| | ||||||||||||||| ||||||||||||| |
|
|
| T |
33358714 |
gatccaacttagcatttcacttcctggagtaactatttgaat |
33358755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1408 (Bit Score: 215; Significance: 1e-117; HSPs: 1)
Name: scaffold1408
Description:
Target: scaffold1408; HSP #1
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 250 - 778
Target Start/End: Original strand, 367 - 907
Alignment:
| Q |
250 |
aaatgctgcacaacatacaataccaatgatattattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttg |
349 |
Q |
| |
|
|||| |||||||| |||||| |||||||||||||| | ||||||||| ||| |||||| ||||||| |||||||| |||||| |||||||||||| |
|
|
| T |
367 |
aaatactgcacaaaatacaaagccaatgatattattcttattgtcatgtataacaggagattcgtctattagtattgaaccacccatgctctgattgttg |
466 |
T |
|
| Q |
350 |
atccaacttggtatttcacttcctggattaactatttgaatctcataagagta---ac---------gtgggtttgccttaatgaattgtttcatccata |
437 |
Q |
| |
|
||||| ||||||||||||||||||||| |||| ||||||| |||||| | || || || ||||||||| ||||||||||||||||||| |
|
|
| T |
467 |
atccagcttggtatttcacttcctggagtaacaatttgaagctcatacaaatacggaccgtaggattgttggtttgcctgaatgaattgtttcatccatg |
566 |
T |
|
| Q |
438 |
aaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaatcctgtatcacaaatatagtcgtcgtactcacgatgaac |
537 |
Q |
| |
|
||| ||| ||||| || ||| ||||||||||||||||||||||||||||||||||| ||||||| || ||| ||| |||| || |||| ||| | | |
|
|
| T |
567 |
aaaatgttatgctactacaacattccctctcacccaattttggacagttgaaaatgaccaatcctttagtccaataatattcgttgttctcatgataatc |
666 |
T |
|
| Q |
538 |
ctccccagtattggtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaggcta |
637 |
Q |
| |
|
| |||| || || | |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
667 |
cggcccaatagtgcttggaaaaggaagttgaggcaacgattccaacaacttgcaatgctccaaatttaaatatacaagtctggaaagcttcctcatgcta |
766 |
T |
|
| Q |
638 |
ggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgtatcaggcacatggcttagatagcaaaagcttatgt |
737 |
Q |
| |
|
|||| ||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||| ||||||||| |||| |
|
|
| T |
767 |
ggtagtgtcacaaaattatttccccctaaatttaatctttctagccgatgtaaacattcaattgcatcaggaacatggcttagatggcaaaagctaatgt |
866 |
T |
|
| Q |
738 |
caaccttacgcaaacaacataaactacgcaaggaaggcaac |
778 |
Q |
| |
|
||| |||||||||||| ||||| |||| ||| |||||||| |
|
|
| T |
867 |
caatgttacgcaaacaatataaaatacgaaagcaaggcaac |
907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 215; Significance: 1e-117; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 250 - 778
Target Start/End: Original strand, 6113 - 6653
Alignment:
| Q |
250 |
aaatgctgcacaacatacaataccaatgatattattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttg |
349 |
Q |
| |
|
|||| |||||||| |||||| |||||||||||||| | ||||||||| ||| |||||| ||||||| |||||||| |||||| |||||||||||| |
|
|
| T |
6113 |
aaatactgcacaaaatacaaagccaatgatattattcttattgtcatgtataacaggagattcgtctattagtattgaaccacccatgctctgattgttg |
6212 |
T |
|
| Q |
350 |
atccaacttggtatttcacttcctggattaactatttgaatctcataagagta---ac---------gtgggtttgccttaatgaattgtttcatccata |
437 |
Q |
| |
|
||||| ||||||||||||||||||||| |||| ||||||| |||||| | || || || ||||||||| ||||||||||||||||||| |
|
|
| T |
6213 |
atccagcttggtatttcacttcctggagtaacaatttgaagctcatacaaatacggaccgtaggattgttggtttgcctgaatgaattgtttcatccatg |
6312 |
T |
|
| Q |
438 |
aaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaatcctgtatcacaaatatagtcgtcgtactcacgatgaac |
537 |
Q |
| |
|
||| ||| ||||| || ||| ||||||||||||||||||||||||||||||||||| ||||||| || ||| ||| |||| || |||| ||| | | |
|
|
| T |
6313 |
aaaatgttatgctactacaacattccctctcacccaattttggacagttgaaaatgaccaatcctttagtccaataatattcgttgttctcatgataatc |
6412 |
T |
|
| Q |
538 |
ctccccagtattggtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaggcta |
637 |
Q |
| |
|
| |||| || || | |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
6413 |
cggcccaatagtgcttggaaaaggaagttgaggcaacgattccaacaacttgcaatgctccaaatttaaatatacaagtctggaaagcttcctcatgcta |
6512 |
T |
|
| Q |
638 |
ggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgtatcaggcacatggcttagatagcaaaagcttatgt |
737 |
Q |
| |
|
|||| ||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||| ||||||||| |||| |
|
|
| T |
6513 |
ggtagtgtcacaaaattatttccccctaaatttaatctttctagccgatgtaaacattcaattgcatcaggaacatggcttagatggcaaaagctaatgt |
6612 |
T |
|
| Q |
738 |
caaccttacgcaaacaacataaactacgcaaggaaggcaac |
778 |
Q |
| |
|
||| |||||||||||| ||||| |||| ||| |||||||| |
|
|
| T |
6613 |
caatgttacgcaaacaatataaaatacgaaagcaaggcaac |
6653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 1e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 550 - 768
Target Start/End: Complemental strand, 17440856 - 17440638
Alignment:
| Q |
550 |
ggtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaggctaggtaatgtcaca |
649 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||| || |
|
|
| T |
17440856 |
ggtaggaaaaggaagttgaggcaaagattccaacaacttgcaatgctgcaaatttaaatatacaagtttcgaaagcttcctcaggctaggtagtgtcgca |
17440757 |
T |
|
| Q |
650 |
aaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgtatcaggcacatggcttagatagcaaaagcttatgtcaaccttacgca |
749 |
Q |
| |
|
||||| |||||| |||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||| |||||| || |||||||| | ||||| |
|
|
| T |
17440756 |
aaatcatttccccctaaatttaatctttctacccaatgtaaacattcaattgtatccggcacttggcttagacggcaaaaactaatgtcaacttcacgca |
17440657 |
T |
|
| Q |
750 |
aacaacataaactacgcaa |
768 |
Q |
| |
|
||||| |||| ||| |||| |
|
|
| T |
17440656 |
aacaatataagctatgcaa |
17440638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 250 - 505
Target Start/End: Complemental strand, 17441147 - 17440898
Alignment:
| Q |
250 |
aaatgctgcacaacatacaataccaatgatattattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttg |
349 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||| || |||||||||| |||||||| |||||||| ||||| |||| ||||||| |
|
|
| T |
17441147 |
aaatactgcacaacatacaaaaccaatgatattattgtcat------gcttaataggagattggtctattcttattgaatcacccacgctcttattgttg |
17441054 |
T |
|
| Q |
350 |
atccaacttggtatttcacttcctggattaactatttgaatctcataagagtaacgtgggtttgccttaatgaattgtttcatccataaaagtgtcatgc |
449 |
Q |
| |
|
||||||||||||||||| ||||||||| |||| || |||||| || | || |||||||||||||||||||| |||||||| ||| |||||||| |
|
|
| T |
17441053 |
atccaacttggtatttcgcttcctggactaacaatatgaatcctattcaaatagaaagggtttgccttaatgaattgcatcatccatgaaaatgtcatgc |
17440954 |
T |
|
| Q |
450 |
tcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaatcctgta |
505 |
Q |
| |
|
| ||| || |||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
17440953 |
tactgtaacattccctctcacccaattttggacagttgaagatgaacaatcctgta |
17440898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 3e-44; HSPs: 14)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 554 - 701
Target Start/End: Complemental strand, 31499020 - 31498873
Alignment:
| Q |
554 |
ggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaggctaggtaatgtcacaaaat |
653 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || || |||||| |||||||||||||||| | |||||||||||||||||||||||| | |
|
|
| T |
31499020 |
ggaaaaggaagttgaggcaaagattccaacaatttgcaatgttctaagtttaaacatacaagtttggaaaggtccctcaggctaggtaatgtcacaaact |
31498921 |
T |
|
| Q |
654 |
cgtttcccgctaaatttaatctttctagccaatgtaaacattcaattg |
701 |
Q |
| |
|
||||||| |||||||||| ||||| ||||||||||||| |||||| |
|
|
| T |
31498920 |
tgtttccccctaaatttaactcttctaaccaatgtaaacatccaattg |
31498873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 551 - 721
Target Start/End: Original strand, 31157250 - 31157420
Alignment:
| Q |
551 |
gtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaggctaggtaatgtcacaa |
650 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||| |||||||||||| | |||||||| |
|
|
| T |
31157250 |
gtaggaaaaggaagttgaggcaaagattccaaaagcttgcaatgctccaagtttaaatatacaagtttggaaagctccctcaggctaggcagtgtcacaa |
31157349 |
T |
|
| Q |
651 |
aatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgtatcaggcacatggcttaga |
721 |
Q |
| |
|
||| ||| ||| ||| ||||||||||||||| | | ||| |||| |||||| |||||| | || ||||||| |
|
|
| T |
31157350 |
aattgttcccccctatatttaatctttctagtcgaagtagacatccaattgcatcagggagatagcttaga |
31157420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 551 - 701
Target Start/End: Original strand, 31148336 - 31148486
Alignment:
| Q |
551 |
gtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaggctaggtaatgtcacaa |
650 |
Q |
| |
|
|||| |||||||||||||||||| |||| |||||| || ||||||| ||| ||||||||| ||||| |||| |||||||| |||||||||| ||||||| |
|
|
| T |
31148336 |
gtagcaaaaggaagttgaggcaacgatttcaacaacttacaatgctgcaagtttaaatatgcaagtctggatagcttcctaaggctaggtaccgtcacaa |
31148435 |
T |
|
| Q |
651 |
aatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattg |
701 |
Q |
| |
|
||| ||||||| ||| ||||||||||||||||||| |||||| | |||||| |
|
|
| T |
31148436 |
aattgtttccccctagatttaatctttctagccaacgtaaacgtccaattg |
31148486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 551 - 672
Target Start/End: Complemental strand, 31504153 - 31504032
Alignment:
| Q |
551 |
gtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaggctaggtaatgtcacaa |
650 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
31504153 |
gtaggagaaggaagaacaggcaaagattccaacagtttgcaatgctccaagtttaaatatacaagtttggaaagctccctcaggctaggtactgtcacaa |
31504054 |
T |
|
| Q |
651 |
aatcgtttcccgctaaatttaa |
672 |
Q |
| |
|
||| |||||| |||| ||||| |
|
|
| T |
31504053 |
aattatttccccctaagtttaa |
31504032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 551 - 701
Target Start/End: Complemental strand, 31478968 - 31478818
Alignment:
| Q |
551 |
gtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaggctaggtaatgtcacaa |
650 |
Q |
| |
|
|||||| |||||||| ||||||||||| ||||| ||||||||||| || |||||||||||||||| ||||||| |||||| ||||||| |||||||| |
|
|
| T |
31478968 |
gtaggagaaggaagtacaggcaaagatttcaacagcttgcaatgctctaagcttaaatatacaagttttgaaagctccctcagactaggtactgtcacaa |
31478869 |
T |
|
| Q |
651 |
aatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattg |
701 |
Q |
| |
|
||| ||||||| ||||||||||| ||||| ||||| || |||| |||||| |
|
|
| T |
31478868 |
aattgtttccccctaaatttaatgcttctaaccaatatagacatccaattg |
31478818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 258 - 505
Target Start/End: Complemental strand, 31472827 - 31472565
Alignment:
| Q |
258 |
cacaacatacaataccaatgatattattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaact |
357 |
Q |
| |
|
||||||||| | ||||||||||||||||| |||||||||| |||| ||||| ||||| | |||| |||| |||| | |||||||||||| |||||| |
|
|
| T |
31472827 |
cacaacatatacaaccaatgatattattgttattgtcatgcataatgggagatgagtctaatcgtatcgaatcacccttgttctgattgttgaaccaact |
31472728 |
T |
|
| Q |
358 |
tggtatttcacttcctggattaactatttga---atctcataagagt---------aacgtgggtttgccttaatgaattgtttcatccataaaagtgtc |
445 |
Q |
| |
|
||||||||||||||||||| |||| || ||| || |||||| ||| | |||| ||||||| ||||| |||| |||||||| ||| |||| |
|
|
| T |
31472727 |
tggtatttcacttcctggagtaacaatctgaattatatcataacagtcagggaaggattgtggatttgcctgaatgagttgtatcatccatgaaaatgtc |
31472628 |
T |
|
| Q |
446 |
atgctcctg---caatgttccctctcacccaattttggacagttgaaaatgagcaatcctgta |
505 |
Q |
| |
|
||| | || |||||||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
31472627 |
atgttagtgcaacaatgttccctctcacccaaattaggacagttgaaaatgagcaatcctgta |
31472565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 250 - 391
Target Start/End: Complemental strand, 31499340 - 31499199
Alignment:
| Q |
250 |
aaatgctgcacaacatacaataccaatgatattattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttg |
349 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||| ||||||||| |||| ||||| ||||||| ||||||||| |||| | |||||||| || |
|
|
| T |
31499340 |
aaatactgcacaacatacaaagccaatgatattattgttattgtcatggataatgggagatgagtctattcgtattgaatcacccttgctctgattctta |
31499241 |
T |
|
| Q |
350 |
atccaacttggtatttcacttcctggattaactatttgaatc |
391 |
Q |
| |
|
| |||||||| |||||||||||||||| |||| || |||||| |
|
|
| T |
31499240 |
aaccaacttgatatttcacttcctggagtaacaatatgaatc |
31499199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 258 - 502
Target Start/End: Complemental strand, 31479285 - 31479029
Alignment:
| Q |
258 |
cacaacatacaataccaatgatattattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaact |
357 |
Q |
| |
|
||||||||||| |||| ||||||||||| |||||| ||| |||| ||||| |||||| ||||| ||| |||| | ||||||||||||| |||||| |
|
|
| T |
31479285 |
cacaacatacacagccaacgatattattgttattgtcgtgcataatcggagaagaatctattcgtattaaattacccttgctctgattgttgaaccaact |
31479186 |
T |
|
| Q |
358 |
tggtatttcacttcctggattaactatttgaatc------------tcataagagtaacgtgggtttgccttaatgaattgtttcatccataaaagtgtc |
445 |
Q |
| |
|
||| |||||||| |||||| |||| ||||||| | |||| ||| | || ||||||||| |||||||||| |||||||| ||| |||| |
|
|
| T |
31479185 |
tggcatttcactacctggagtaacaatttgaaccctatcagaggagtcatgggagaattgtcggtttgcctgaatgaattgtatcatccatgaaaatgtc |
31479086 |
T |
|
| Q |
446 |
atgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaatcct |
502 |
Q |
| |
|
||||| || ||| ||||| | ||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
31479085 |
atgctactccaacgttccgtttcacccaatttaggacagttgaaaatgaacaatcct |
31479029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 338 - 494
Target Start/End: Original strand, 31148108 - 31148267
Alignment:
| Q |
338 |
ctctgattgttgatccaacttggtatttcacttcctggattaactatttgaatc---tcataagagtaacgtgggtttgccttaatgaattgtttcatcc |
434 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||| |||| ||||||||| ||| | ||| | ||||||| ||| ||||| |||| |||||| |
|
|
| T |
31148108 |
ctctgattgttgaaccaacttggtatttcacttcccggagtaacaatttgaatcacatcagatgaggattgtgggttcgcccgaatgagttgtatcatcc |
31148207 |
T |
|
| Q |
435 |
ataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatga |
494 |
Q |
| |
|
|| ||| | ||||||| | ||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
31148208 |
atgaaaatatcatgctattccaacattccctctcacccaatttaggacagttgaaaatga |
31148267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 405 - 505
Target Start/End: Complemental strand, 31504311 - 31504211
Alignment:
| Q |
405 |
gtgggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaatcctgt |
504 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||| |||||| || || | |||||||||| ||||||| |||||||||||||| ||||||| ||| |
|
|
| T |
31504311 |
gtgggtttgccttaatgaattgtatcatccatgaaaatgtcattctaatgtagcattccctctcatccaatttaggacagttgaaaataagcaatcttgt |
31504212 |
T |
|
| Q |
505 |
a |
505 |
Q |
| |
|
| |
|
|
| T |
31504211 |
a |
31504211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 411 - 502
Target Start/End: Original strand, 31157122 - 31157213
Alignment:
| Q |
411 |
ttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaatcct |
502 |
Q |
| |
|
|||||| ||| |||||| |||||||| ||| || |||||| |||||| ||| |||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
31157122 |
ttgcctgaatcaattgtatcatccatgaaaatgccatgctattgcaatcttcactctcacccaatttaggacagttgaaaatgaccaatcct |
31157213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 602 - 653
Target Start/End: Complemental strand, 31472462 - 31472411
Alignment:
| Q |
602 |
tttaaatatacaagtttggaaagcttcctcaggctaggtaatgtcacaaaat |
653 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||| ||||||||||| |
|
|
| T |
31472462 |
tttaaatatacaagtttggaaagctccctcgggctaggtactgtcacaaaat |
31472411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 587 - 685
Target Start/End: Complemental strand, 31491725 - 31491627
Alignment:
| Q |
587 |
ttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaa |
685 |
Q |
| |
|
|||||||||||||||||||| ||| ||||| | ||| | | || |||||||| ||||| ||||||| ||||||| |||||||| |||||||| |||| |
|
|
| T |
31491725 |
ttgcaatgctccaaatttaagtattcaagtctagaatgatcccggaggctaggcaatgtgacaaaattgtttccccttaaatttagtctttctaaccaa |
31491627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 635 - 685
Target Start/End: Original strand, 31526524 - 31526574
Alignment:
| Q |
635 |
ctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaa |
685 |
Q |
| |
|
||||| ||||||||||||| ||||||| |||||||||||||||||| |||| |
|
|
| T |
31526524 |
ctaggcaatgtcacaaaattgtttccccctaaatttaatctttctaaccaa |
31526574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 6e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 559 - 677
Target Start/End: Complemental strand, 6785354 - 6785236
Alignment:
| Q |
559 |
aggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaggctaggtaatgtcacaaaatcgttt |
658 |
Q |
| |
|
|||||| | ||||||| ||| |||||| ||||| || ||||| ||||||||||| ||||||||||||| | |||||||||| ||||||||||||| |||| |
|
|
| T |
6785354 |
aggaagatcaggcaaatatttcaacaacttgcagtgatccaagtttaaatatacgagtttggaaagctccttcaggctaggcaatgtcacaaaatggttt |
6785255 |
T |
|
| Q |
659 |
cccgctaaatttaatcttt |
677 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
6785254 |
ccccctaaatttaatcttt |
6785236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University