View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623_2D_low_50 (Length: 476)
Name: NF1623_2D_low_50
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 92 - 464
Target Start/End: Complemental strand, 223721 - 223359
Alignment:
| Q |
92 |
ttagaatgtgaagtaacctttgaaactcatttcactttattattattatttgcacaagtgaacaaacaatgcaggctcgccggagaagctctgtccggcc |
191 |
Q |
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| T |
223721 |
ttagaatgtgaagtaacctttgaaactcatttcactttattattatt---tgcacaagtgaacaaacaatgcaggctcgccggagaagctctgtccggcc |
223625 |
T |
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| Q |
192 |
accggcgccggagaaagattctaaacattttatgaaagccatccttccctcacccattcatgacactcaaatagtatgtttatttttgtctctttc-ttt |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
223624 |
accggcgccggagaaagattctaaacattttatgaaagccatccttccctcacccattcatgacactcaaatagtatgtttatttttatctctttctttt |
223525 |
T |
|
| Q |
291 |
tgaattgtttttctgcctatatatgtttatgtctcaaatactagtgttttttctggcttgttttgtactattatgcattcatgcgtgtatgtcaatcaaa |
390 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
223524 |
tgacttgtttttctgcctatatatgtttatgtctcaaatactagtgttttttctggcttgttttgtactattatgca--------tgcatgtcaatcaaa |
223433 |
T |
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| Q |
391 |
tgttattattaattttataaaatgatatttaaatgttcatgtgctacaaagtctctttgtcattgtttttgttc |
464 |
Q |
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| T |
223432 |
tgttattattaattttataaaatgatatttaaatgttcatgtgctacaaagtctctttgtcattgtttttgttc |
223359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 160 - 413
Target Start/End: Complemental strand, 218448 - 218198
Alignment:
| Q |
160 |
atgcaggctcgccggagaagctctgtccggccaccggcgccggagaaagattctaaacattttatgaaagccatccttccctcacccattcatgacactc |
259 |
Q |
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| T |
218448 |
atgcaggctcgccggagaagctctgtccggccaccggtggcggagaaggattctaaacattttatgaaagccatccttccctcagccattcatgacacta |
218349 |
T |
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| Q |
260 |
aaatagtatgtttatttttgtctctttcttttgaattgtttttctgcctatatatgtttatgtctcaaatactagtg-ttttttctggcttgttttgtac |
358 |
Q |
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|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
218348 |
aattagtatgtttatttttgtctctttcttttgagttgtttttctgcctatatatgtttatgtctcaaatactagtgcttttttctggcttgttttgtac |
218249 |
T |
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| Q |
359 |
tattatgcattcatgcgtgtatgtcaatcaaatgttattattaattttataaaat |
413 |
Q |
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| T |
218248 |
tattatgcatgcatgc----atgtcaatcaaatgttattattaattttataaaat |
218198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 157 - 233
Target Start/End: Complemental strand, 199291 - 199215
Alignment:
| Q |
157 |
acaatgcaggctcgccggagaagctctgtccggccaccggcgccggagaaagattctaaacattttatgaaagccat |
233 |
Q |
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| T |
199291 |
acaatgcagcctcaccggagaagatgtggccggtcaccggcgccggagaaagcatcgaagcattttatgaaagccat |
199215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 256
Target Start/End: Complemental strand, 225301 - 225259
Alignment:
| Q |
214 |
aaacattttatgaaagccatccttccctcacccattcatgaca |
256 |
Q |
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| T |
225301 |
aaacattttaagaaggccatacttccctcacccattcatgaca |
225259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 212354 - 212309
Alignment:
| Q |
194 |
cggcgccggagaaagattctaaacattttatgaaagccatccttcc |
239 |
Q |
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| T |
212354 |
cggcggcggagaaagattcaaagcattttatgaaagccatacttcc |
212309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 158 - 293
Target Start/End: Complemental strand, 3809431 - 3809295
Alignment:
| Q |
158 |
caatgcaggctcgccggagaagctctgtccggccaccggcgccggagaaag-attctaaacattttatgaaagccatccttccctcacccattcatgaca |
256 |
Q |
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|||||||| ||||||||||||| ||||||| | || |||||||||||| | | || ||||||||| |||||||||| |||||||||||||||||| || |
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| T |
3809431 |
caatgcagcctcgccggagaaggtctgtccagtcattggcgccggagaaggtaatcaaaacattttctgaaagccataattccctcacccattcatgcca |
3809332 |
T |
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| Q |
257 |
ctcaaatagtatgtttatttttgtctctttcttttga |
293 |
Q |
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| T |
3809331 |
ctcaattagtaagtttcggtttctctctttcttttga |
3809295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 252
Target Start/End: Complemental strand, 29839364 - 29839309
Alignment:
| Q |
197 |
cgccggagaaagattctaaacattttatgaaagccatccttccctcacccattcat |
252 |
Q |
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|||||||||| || || |||||||||||||||||||| |||||||||||||||||| |
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| T |
29839364 |
cgccggagaaggaatcaaaacattttatgaaagccatacttccctcacccattcat |
29839309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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