View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1623_2D_low_53 (Length: 472)

Name: NF1623_2D_low_53
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1623_2D_low_53
NF1623_2D_low_53
[»] chr2 (4 HSPs)
chr2 (17-472)||(8020565-8021020)
chr2 (325-402)||(22965011-22965088)
chr2 (325-402)||(22399511-22399588)
chr2 (19-99)||(22791940-22792020)
[»] chr3 (33 HSPs)
chr3 (17-245)||(28151610-28151839)
chr3 (325-472)||(28150882-28151026)
chr3 (330-472)||(28003131-28003270)
chr3 (17-184)||(17744446-17744615)
chr3 (17-184)||(19045766-19045935)
chr3 (375-472)||(27979441-27979538)
chr3 (17-230)||(11420963-11421177)
chr3 (60-231)||(28037413-28037584)
chr3 (19-202)||(28149970-28150155)
chr3 (238-326)||(28151276-28151364)
chr3 (19-156)||(28161925-28162064)
chr3 (376-472)||(27919321-27919414)
chr3 (60-185)||(27954347-27954471)
chr3 (17-156)||(28185968-28186109)
chr3 (107-203)||(27458885-27458981)
chr3 (66-185)||(8539262-8539381)
chr3 (17-185)||(27920262-27920434)
chr3 (333-468)||(27459906-27460038)
chr3 (93-202)||(27776525-27776634)
chr3 (344-472)||(11419950-11420075)
chr3 (17-137)||(28479815-28479937)
chr3 (17-137)||(28508998-28509120)
chr3 (407-472)||(17745559-17745624)
chr3 (407-472)||(19046879-19046944)
chr3 (406-471)||(28036387-28036452)
chr3 (137-202)||(28056547-28056612)
chr3 (137-202)||(28066972-28067037)
chr3 (335-407)||(26236438-26236510)
chr3 (272-323)||(28054960-28055011)
chr3 (272-323)||(28065385-28065436)
chr3 (272-324)||(8539704-8539756)
chr3 (272-320)||(28149203-28149251)
chr3 (238-266)||(28161470-28161498)
[»] scaffold0257 (2 HSPs)
scaffold0257 (19-203)||(19079-19265)
scaffold0257 (272-318)||(18626-18672)
[»] scaffold0922 (1 HSPs)
scaffold0922 (60-126)||(1819-1885)
[»] chr4 (3 HSPs)
chr4 (238-266)||(9328792-9328820)
chr4 (238-266)||(9382569-9382597)
chr4 (444-472)||(18010744-18010772)


Alignment Details
Target: chr2 (Bit Score: 440; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 17 - 472
Target Start/End: Complemental strand, 8021020 - 8020565
Alignment:
Q  17 catcatttagagaaactgagaaaaggtgagaaagaagaaggttaacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaaga 116  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8021020 catcatttagagaaactgagaaaaggtgggaaagaagaaggttaacttcaaaatgaaaagggcgatgagataacttaagaaaagaaaaccgatccaaaga 8020921  T
Q  117 ttcttcacctcgatcgtcattagtgttactagtttcctgccagatttcaacatcaacatcttgagtggttagaggctttgttatggcgattgaagtagaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020920 ttcttcacctcgatcgtcattagtgttactagtttcctgccagatttcaacatcaacatcttgagtggttagaggctttgttatggcgattgaagtagaa 8020821  T
Q  217 gctattgctctttggttgtcaccttcttcaacacttatttcgctaacctgtcaatattgtggtataattcaattccggtattgacaaagtgtaaaaaaga 316  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8020820 gctatagctctttggttgtcaccttcttcaacacttatttcgctaacctgtcaatattgtggtataattcaattccggtactgacaaagtgtaaaaaaga 8020721  T
Q  317 atacaagaaatatgtatatatttggagaggaatatccaagtgattttcacatggccttcaaattacttttgaatttgttggtaatattgttgctactgat 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020720 atacaagaaatatgtatatatttggagaggaatatccaagtgattttcacatggccttcaaattacttttgaatttgttggtaatattgttgctactgat 8020621  T
Q  417 ggcatctcttgttgaggaacaatttcaacaaattcatgctctgtctctagtgtttg 472  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020620 ggcatctcttgttgaggaacaatttcaacaaattcatgctctgtctctagtgtttg 8020565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 325 - 402
Target Start/End: Complemental strand, 22965088 - 22965011
Alignment:
Q  325 aatatgtatatatttggagaggaatatccaagtgattttcacatggccttcaaattacttttgaatttgttggtaata 402  Q
    |||| ||||||||||||||||||||||| |||||| ||| ||| |||||||| ||||||| |||||||||||||||||    
T  22965088 aataagtatatatttggagaggaatatcgaagtgaatttgacacggccttcatattacttctgaatttgttggtaata 22965011  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 325 - 402
Target Start/End: Complemental strand, 22399588 - 22399511
Alignment:
Q  325 aatatgtatatatttggagaggaatatccaagtgattttcacatggccttcaaattacttttgaatttgttggtaata 402  Q
    |||| ||||||||||||||||||||||  |||||| ||| ||| |||||||| ||||||| |||||||||||||||||    
T  22399588 aataagtatatatttggagaggaatatagaagtgaatttgacacggccttcatattacttctgaatttgttggtaata 22399511  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 22792020 - 22791940
Alignment:
Q  19 tcatttagagaaactgagaaaaggtgagaaagaaga-aggttaacttcaaaatgaaaagggcgatgaggtaacttaagaaaa 99  Q
    ||||||||||||||||| || ||  |||| |||||| || ||||||||||||| |||||||  |||||||||| ||||||||    
T  22792020 tcatttagagaaactga-aatagtggagagagaagagagtttaacttcaaaatcaaaagggttatgaggtaacataagaaaa 22791940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 158; Significance: 7e-84; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 28151839 - 28151610
Alignment:
Q  17 catcatttagagaaactgagaaaaggtgagaaagaaga-aggttaacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaag 115  Q
    ||||||||||||||||||| ||||| || |||| |||| || | ||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||    
T  28151839 catcatttagagaaactgacaaaagatgggaaacaagagagctaaacttcaaaataaaaagggcgatgaggtaacttaagaaaataaaagcgatccaaag 28151740  T
Q  116 attcttcacctcgatcgtcattagtgttactagtttcctgccagatttcaacatcaacatcttgagtggttagaggctttgttatggcgattgaagtaga 215  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||| |||| |    
T  28151739 attcttcaccttgatcatcattagtgttactagtttcctgccagatttcaacatcaacatcttgagtggttacaggctttgttatgtcaattggagtata 28151640  T
Q  216 agctattgctctttggttgtcaccttcttc 245  Q
    ||||||||||||||||||||||||||||||    
T  28151639 agctattgctctttggttgtcaccttcttc 28151610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 325 - 472
Target Start/End: Complemental strand, 28151026 - 28150882
Alignment:
Q  325 aatatgtatatatttggagaggaatatccaagtgattttcacatggccttcaaattacttttgaatttgttggtaatattgttgctactgatggcatctc 424  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||| |||||||||||||||||||    
T  28151026 aatatgtatatatttggagaggaatatccaagtgattttcacatggccttcaaattacttttgaatttgttgg---tattattgctactgatggcatctc 28150930  T
Q  425 ttgttgaggaacaatttcaacaaattcatgctctgtctctagtgtttg 472  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||    
T  28150929 ttgttgaggaacattttcaacaaattcatgctttgtctctagtgtttg 28150882  T

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Target: chr3; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 330 - 472
Target Start/End: Complemental strand, 28003270 - 28003131
Alignment:
Q  330 gtatatatttggagaggaatatccaagtgattttcacatggccttcaaattacttttgaatttgttggtaatattgttgctactgatggcatctcttgtt 429  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||   | || |||||||||||||||||||||| |    
T  28003270 gtatatattgggagaggattatccaagtgattttcacatggccttcaaattacttttgaatttgttgg---ttttattgctactgatggcatctcttgat 28003174  T
Q  430 gaggaacaatttcaacaaattcatgctctgtctctagtgtttg 472  Q
    |||| ||| ||||||||||||||||||||||||||||||||||    
T  28003173 gagggacattttcaacaaattcatgctctgtctctagtgtttg 28003131  T

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Target: chr3; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 17744446 - 17744615
Alignment:
Q  17 catcatttagagaaactg-agaaaaggtgagaaagaagaaggtt-aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaa 114  Q
    |||||||||||||||||| | ||| ||||||||||||||  ||| ||||||||||||||||| |||||||||||||||||||||| |||| |||||||||    
T  17744446 catcatttagagaaactggacaaagggtgagaaagaagagagttcaacttcaaaatgaaaagagcgatgaggtaacttaagaaaataaaatcgatccaaa 17744545  T
Q  115 gattcttcacctcgatcgtcattagtgttactagtttcctgccagatttcaacatcaacatcttgagtgg 184  Q
    |||| || |||| | || |||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  17744546 gattttttaccttggtcatcattagtctttctagtttcctgccagatttcaacatcaacatcttgagtgg 17744615  T

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Target: chr3; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 19045766 - 19045935
Alignment:
Q  17 catcatttagagaaactg-agaaaaggtgagaaagaagaaggtt-aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaa 114  Q
    |||||||||||||||||| | ||| ||||||||||||||  ||| ||||||||||||||||| |||||||||||||||||||||| |||| |||||||||    
T  19045766 catcatttagagaaactggacaaagggtgagaaagaagagagttcaacttcaaaatgaaaagagcgatgaggtaacttaagaaaataaaatcgatccaaa 19045865  T
Q  115 gattcttcacctcgatcgtcattagtgttactagtttcctgccagatttcaacatcaacatcttgagtgg 184  Q
    |||| || |||| | || |||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  19045866 gattttttaccttggtcatcattagtctttctagtttcctgccagatttcaacatcaacatcttgagtgg 19045935  T

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Target: chr3; HSP #6
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 375 - 472
Target Start/End: Complemental strand, 27979538 - 27979441
Alignment:
Q  375 caaattacttttgaatttgttggtaatattgttgctactgatggcatctcttgttgaggaacaatttcaacaaattcatgctctgtctctagtgtttg 472  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27979538 caaattactttcgaatttgttggtaatattgttgctactgatggcatgtcttgttgaggaacattttcaacaaattcatgctctgtctctagtgtttg 27979441  T

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Target: chr3; HSP #7
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 11421177 - 11420963
Alignment:
Q  17 catcatttagagaaactgagaaaaggtgagaaagaagaaggtt-aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaag 115  Q
    |||||||||||| |||||| |||  ||| |||||||||  ||| |||||| |||||||||||| ||||  |||||||||||||| ||||| |||||||||    
T  11421177 catcatttagagcaactgacaaacagtgggaaagaagagagttcaacttctaaatgaaaagggtgatgtcgtaacttaagaaaataaaactgatccaaag 11421078  T
Q  116 attcttcacctcgatcgtcattagtgttactagtttcctgccagatttcaacatcaacatcttgagtggttagaggctttgttatggcgattgaagtaga 215  Q
    | || |||||| |||| |||||||  |||||||||||||| ||||||| |||||||||||||||| ||||   ||||||||||||||| |||  || |||    
T  11421077 agtcatcaccttgatcatcattagccttactagtttcctgacagattttaacatcaacatcttgaatggtagcaggctttgttatggcaatttgaggaga 11420978  T
Q  216 agctattgctctttg 230  Q
    |||||| ||| ||||    
T  11420977 agctatggctatttg 11420963  T

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Target: chr3; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 60 - 231
Target Start/End: Complemental strand, 28037584 - 28037413
Alignment:
Q  60 aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccag 159  Q
    ||||||||||||||||||| ||||||||||||| |||||| || || |||||||||| |||| |||| || | ||||||||||||||||||||  |||||    
T  28037584 aacttcaaaatgaaaagggtgatgaggtaactttagaaaataacactgatccaaagagtctttaccttgaccatcattagtgttactagtttcgcgccag 28037485  T
Q  160 atttcaacatcaacatcttgagtggttagaggctttgttatggcgattgaagtagaagctattgctctttgg 231  Q
     |||  | ||||||||||| |||||| | ||||||||||||||  ||||||| ||||||||| |||||||||    
T  28037484 tttttgagatcaacatcttcagtggtaacaggctttgttatggtaattgaaggagaagctatggctctttgg 28037413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 28150155 - 28149970
Alignment:
Q  19 tcatttagagaaactgag-aaaaggtgagaaagaagaaggttaa-cttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaaga 116  Q
    |||||||||||||||||  |||||||| || ||||||   |||| ||||||||||||||||| |||||| ||||||||||||| ||||  ||||| ||||    
T  28150155 tcatttagagaaactgaacaaaaggtgtgagagaagagatttaaacttcaaaatgaaaagggtgatgagataacttaagaaaataaaattgatcctaaga 28150056  T
Q  117 ttcttcacctcgatcgtcattagtgttactagtttcctgccagatttcaacatcaacatcttgagtggttagaggctttgttatgg 202  Q
     ||||||||| |||| |||||||||||||||||||||||| || | | ||||| ||| ||||||||||| |||||| |||||||||    
T  28150055 ctcttcaccttgatcatcattagtgttactagtttcctgcaagttattaacatgaacttcttgagtggtaagaggccttgttatgg 28149970  T

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Target: chr3; HSP #10
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 238 - 326
Target Start/End: Complemental strand, 28151364 - 28151276
Alignment:
Q  238 ccttcttcaacacttatttcgctaacctgtcaatattgtggtataattcaattccggtattgacaaagtgtaaaaaagaatacaagaaa 326  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||| ||||||||||| |||||||||||||||||    
T  28151364 ccttcttcaacacttatttcgctaacctgtcaatattgtagtataattcaatttctgtactgacaaagtgtgaaaaagaatacaagaaa 28151276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 28162064 - 28161925
Alignment:
Q  19 tcatttagagaaactgag-aaaaggtgagaaagaagaaggttaa-cttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaaga 116  Q
    |||||||||||||||||  |||||||| || ||||||   |||| ||||||||||||||||| |||||| ||||||||||||| ||||  ||||||||||    
T  28162064 tcatttagagaaactgaacaaaaggtgtgagagaagagatttaaacttcaaaatgaaaagggtgatgagataacttaagaaaataaaattgatccaaaga 28161965  T
Q  117 ttcttcacctcgatcgtcattagtgttactagtttcctgc 156  Q
     ||||||||| |||| ||||||||||||||||||||||||    
T  28161964 gtcttcaccttgatcatcattagtgttactagtttcctgc 28161925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 376 - 472
Target Start/End: Complemental strand, 27919414 - 27919321
Alignment:
Q  376 aaattacttttgaatttgttggtaatattgttgctactgatggcatctcttgttgaggaacaatttcaacaaattcatgctctgtctctagtgtttg 472  Q
    ||||||||| |||||||||||||| |||||   ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27919414 aaattacttctgaatttgttggtattattg---ctactgatggcatcttttgttgaggaacattttcaacaaattcatgctctgtctctagtgtttg 27919321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 60 - 185
Target Start/End: Complemental strand, 27954471 - 27954347
Alignment:
Q  60 aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccag 159  Q
    ||||||||||||||||||  |||||||||||||| ||||| || ||  ||||||||| | ||||||| |||| |||||||||||||||||||||||||||    
T  27954471 aacttcaaaatgaaaaggt-gatgaggtaacttatgaaaacaacactaatccaaagagttttcaccttgatcatcattagtgttactagtttcctgccag 27954373  T
Q  160 atttcaacatcaacatcttgagtggt 185  Q
    |||| | ||||||||| |||||||||    
T  27954372 attttatcatcaacatattgagtggt 27954347  T

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Target: chr3; HSP #14
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 28186109 - 28185968
Alignment:
Q  17 catcatttagagaaactgag-aaaaggtgagaaagaagaaggttaa-cttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaa 114  Q
    |||||||||||||||||||  |||||||| || ||||||   |||| ||||||||||||||||| |||||| ||||||||||||| ||||  ||||||||    
T  28186109 catcatttagagaaactgaacaaaaggtgtgagagaagagatttaaacttcaaaatgaaaagggtgatgagataacttaagaaaataaaattgatccaaa 28186010  T
Q  115 gattcttcacctcgatcgtcattagtgttactagtttcctgc 156  Q
    || ||||||||| |||| |||| |||||||||||||||||||    
T  28186009 gagtcttcaccttgatcatcatcagtgttactagtttcctgc 28185968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 107 - 203
Target Start/End: Original strand, 27458885 - 27458981
Alignment:
Q  107 gatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatttcaacatcaacatcttgagtggttagaggctttgttatggc 203  Q
    |||||||||| ||||||||| |||| || ||||| || ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  27458885 gatccaaagagtcttcaccttgatcatccttagtcttgctagtttcctgccagattttaacatcaacatcttgagtggtaagaggctttgttatggc 27458981  T

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Target: chr3; HSP #16
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 66 - 185
Target Start/End: Original strand, 8539262 - 8539381
Alignment:
Q  66 aaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatttca 165  Q
    ||||||||||||| ||  |||||||||||||||| ||||| ||||||| |||||||||||| |||    |||||||||||||||||||||||| | || |    
T  8539262 aaaatgaaaagggtgacaaggtaacttaagaaaataaaactgatccaaggattcttcaccttgattaatattagtgttactagtttcctgccaaagttta 8539361  T
Q  166 acatcaacatcttgagtggt 185  Q
    ||||||||||||||||||||    
T  8539362 acatcaacatcttgagtggt 8539381  T

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Target: chr3; HSP #17
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 27920434 - 27920262
Alignment:
Q  17 catcatttagagaaactgag-aaaaggtgagaaagaagaaggttaa-cttcaaaatgaaaagggcgatgaggtaa---cttaagaaaagaaaaccgatcc 111  Q
    ||||||||||||||||||   |||||||| |||||||||  ||||| ||||||||||||||||  ||||||||||   |||| ||||| || ||  ||||    
T  27920434 catcatttagagaaactgtccaaaaggtgggaaagaagagagttaaacttcaaaatgaaaaggt-gatgaggtaattgcttatgaaaacaacactaatcc 27920336  T
Q  112 aaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatttcaacatcaacatcttgagtggt 185  Q
    ||||| | ||||||| |||| ||||||||||||||||||||||||||||||| | ||||||||| |||||||||    
T  27920335 aaagagttttcaccttgatcatcattagtgttactagtttcctgccagattttatcatcaacatattgagtggt 27920262  T

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Target: chr3; HSP #18
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 333 - 468
Target Start/End: Original strand, 27459906 - 27460038
Alignment:
Q  333 tatatttggagaggaatatccaagtgattttcacatggccttcaaattacttttgaatttgttggtaatattgttgctactgatggcatctcttgttgag 432  Q
    |||||||||||| |||||| |||| || ||  ||||||||| || ||||||| ||| | ||||||||   |||||||||||||||||||||| | |||||    
T  27459906 tatatttggagatgaatatgcaagggacttcgacatggcctgcacattacttctgagtctgttggta---ttgttgctactgatggcatctccttttgag 27460002  T
Q  433 gaacaatttcaacaaattcatgctctgtctctagtg 468  Q
    ||||| ||||| ||||||||||| ||||||| ||||    
T  27460003 gaacattttcatcaaattcatgccctgtctcaagtg 27460038  T

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Target: chr3; HSP #19
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 93 - 202
Target Start/End: Complemental strand, 27776634 - 27776525
Alignment:
Q  93 aagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatttcaacatcaacatcttgagtggttagaggc 192  Q
    ||||||| ||||  |||||||||| | ||||||| |||  |||||||| ||||||||||||||| || |||||||||||||||||||||| ||  |||||    
T  27776634 aagaaaataaaattgatccaaagagttttcaccttgatgatcattagtcttactagtttcctgcaagttttcaacatcaacatcttgagtagtaggaggc 27776535  T
Q  193 tttgttatgg 202  Q
    ||||||||||    
T  27776534 tttgttatgg 27776525  T

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Target: chr3; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 344 - 472
Target Start/End: Complemental strand, 11420075 - 11419950
Alignment:
Q  344 aggaatatccaagtgattttcacatggccttcaaattacttttgaatttgttggtaatattgttgctactgatggcatctcttgttgaggaacaatttca 443  Q
    |||||||| |||| |||||| || |||| |  ||||||||| |||||||||||||| |||||   ||| |||||| ||||| ||  |||||||| |||||    
T  11420075 aggaatatgcaagagattttgacgtggcttgaaaattacttctgaatttgttggtattattg---ctattgatggaatctcatgacgaggaacattttca 11419979  T
Q  444 acaaattcatgctctgtctctagtgtttg 472  Q
    |||||| ||||||||||| ||||||||||    
T  11419978 acaaatccatgctctgtcactagtgtttg 11419950  T

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Target: chr3; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 28479815 - 28479937
Alignment:
Q  17 catcatttagagaaactgag-aaaaggtgagaaagaagaaggttaa-cttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaa 114  Q
    ||||||||| |||||||||| |||||||| || ||||||   |||| |||||||||| |||||| |||||||||| ||||||||| ||||  ||||||||    
T  28479815 catcatttacagaaactgagcaaaaggtgtgagagaagagaattaaacttcaaaatgcaaagggtgatgaggtaaattaagaaaataaaattgatccaaa 28479914  T
Q  115 gattcttcacctcgatcgtcatt 137  Q
    || ||||||||| |||| |||||    
T  28479915 gagtcttcaccttgatcatcatt 28479937  T

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Target: chr3; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 28508998 - 28509120
Alignment:
Q  17 catcatttagagaaactgag-aaaaggtgagaaagaagaaggttaa-cttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaa 114  Q
    ||||||||| |||||||||| |||||||| || ||||||   |||| |||||||||| |||||| |||||||||| ||||||||| ||||  ||||||||    
T  28508998 catcatttacagaaactgagcaaaaggtgtgagagaagagaattaaacttcaaaatgcaaagggtgatgaggtaaattaagaaaataaaattgatccaaa 28509097  T
Q  115 gattcttcacctcgatcgtcatt 137  Q
    || ||||||||| |||| |||||    
T  28509098 gagtcttcaccttgatcatcatt 28509120  T

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Target: chr3; HSP #23
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 407 - 472
Target Start/End: Original strand, 17745559 - 17745624
Alignment:
Q  407 tgctactgatggcatctcttgttgaggaacaatttcaacaaattcatgctctgtctctagtgtttg 472  Q
    ||||||||||||||| ||| || |||||||| ||||||||||||||||||||||||||| ||||||    
T  17745559 tgctactgatggcatttctcgtcgaggaacattttcaacaaattcatgctctgtctctattgtttg 17745624  T

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Target: chr3; HSP #24
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 407 - 472
Target Start/End: Original strand, 19046879 - 19046944
Alignment:
Q  407 tgctactgatggcatctcttgttgaggaacaatttcaacaaattcatgctctgtctctagtgtttg 472  Q
    ||||||||||||||| ||| || |||||||| ||||||||||||||||||||||||||| ||||||    
T  19046879 tgctactgatggcatttctcgtcgaggaacattttcaacaaattcatgctctgtctctattgtttg 19046944  T

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Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 406 - 471
Target Start/End: Complemental strand, 28036452 - 28036387
Alignment:
Q  406 ttgctactgatggcatctcttgttgaggaacaatttcaacaaattcatgctctgtctctagtgttt 471  Q
    |||||||||||||||||||||   |||| | | |||||||||||||||||||||||||||||||||    
T  28036452 ttgctactgatggcatctcttcacgagggaaattttcaacaaattcatgctctgtctctagtgttt 28036387  T

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Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 28056612 - 28056547
Alignment:
Q  137 tagtgttactagtttcctgccagatttcaacatcaacatcttgagtggttagaggctttgttatgg 202  Q
    |||||||||||||||||||| || | | ||||| ||| ||||||||||| |||||| |||||||||    
T  28056612 tagtgttactagtttcctgcaagttattaacatgaacttcttgagtggtaagaggccttgttatgg 28056547  T

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Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 28067037 - 28066972
Alignment:
Q  137 tagtgttactagtttcctgccagatttcaacatcaacatcttgagtggttagaggctttgttatgg 202  Q
    |||||||||||||||||||| || | | ||||| ||| ||||||||||| |||||| |||||||||    
T  28067037 tagtgttactagtttcctgcaagttattaacatgaacttcttgagtggtaagaggccttgttatgg 28066972  T

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Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 407
Target Start/End: Original strand, 26236438 - 26236510
Alignment:
Q  335 tatttggagaggaatatccaagtgattttcacatggccttcaaattacttttgaatttgttggtaatattgtt 407  Q
    ||||||||||||||| |||| | || ||| |||||| || |||||||||| | ||||||||||||||| ||||    
T  26236438 tatttggagaggaatttccatgggaattttacatggtctacaaattacttcttaatttgttggtaataatgtt 26236510  T

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Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 323
Target Start/End: Complemental strand, 28055011 - 28054960
Alignment:
Q  272 attgtggtataattcaattccggtattgacaaagtgtaaaaaagaatacaag 323  Q
    ||||| ||||||||||||||| | ||||||||||||| ||||| ||||||||    
T  28055011 attgtagtataattcaattcctgcattgacaaagtgttaaaaaaaatacaag 28054960  T

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Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 323
Target Start/End: Complemental strand, 28065436 - 28065385
Alignment:
Q  272 attgtggtataattcaattccggtattgacaaagtgtaaaaaagaatacaag 323  Q
    ||||| ||||||||||||||| | ||||||||||||| ||||| ||||||||    
T  28065436 attgtagtataattcaattcctgcattgacaaagtgttaaaaaaaatacaag 28065385  T

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Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 324
Target Start/End: Original strand, 8539704 - 8539756
Alignment:
Q  272 attgtggtataattcaattccggtattgacaaagtgtaaaaaagaatacaaga 324  Q
    ||||| ||||||||||||||| | ||||  ||||||| |||||||||||||||    
T  8539704 attgtagtataattcaattcctgcattggaaaagtgttaaaaagaatacaaga 8539756  T

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Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 320
Target Start/End: Complemental strand, 28149251 - 28149203
Alignment:
Q  272 attgtggtataattcaattccggtattgacaaagtgtaaaaaagaatac 320  Q
    ||||| ||||||||||||||| | |||||||||||||  ||||||||||    
T  28149251 attgtagtataattcaattcctgcattgacaaagtgttcaaaagaatac 28149203  T

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Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 266
Target Start/End: Complemental strand, 28161498 - 28161470
Alignment:
Q  238 ccttcttcaacacttatttcgctaacctg 266  Q
    |||||||||||||||||||||||||||||    
T  28161498 ccttcttcaacacttatttcgctaacctg 28161470  T

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Target: scaffold0257 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 19265 - 19079
Alignment:
Q  19 tcatttagagaaactgag-aaaaggtgagaaagaagaaggttaactt-caaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaaga 116  Q
    |||||||||||||||||  |||||||| || ||||||  ||||| || |||||||||||||| |||||||||||||||||||| || |  ||||||||||    
T  19265 tcatttagagaaactgaacaaaaggtgtgagagaagagagttaaatttcaaaatgaaaagggtgatgaggtaacttaagaaaataatattgatccaaaga 19166  T
Q  117 ttcttcacctcgatcgtcattagtgttactagtttcctgccagatttcaacatcaacatcttgagtggttagaggctttgttatggc 203  Q
     ||||||||| |||| ||| || ||||||||||||||||| || | | ||||||||||||||||||||| |||||||||||||||||    
T  19165 gtcttcaccttgatcatcaataatgttactagtttcctgcaagttattaacatcaacatcttgagtggtaagaggctttgttatggc 19079  T

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Target: scaffold0257; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 318
Target Start/End: Complemental strand, 18672 - 18626
Alignment:
Q  272 attgtggtataattcaattccggtattgacaaagtgtaaaaaagaat 318  Q
    ||||| ||||||||||||||| | ||||||||||||| |||||||||    
T  18672 attgtagtataattcaattcctgcattgacaaagtgtcaaaaagaat 18626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 60 - 126
Target Start/End: Complemental strand, 1885 - 1819
Alignment:
Q  60 aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacct 126  Q
    ||||||||||||||||||| |||| ||||||||||||||| |||||||||  ||| | |||||||||    
T  1885 aacttcaaaatgaaaagggtgatgtggtaacttaagaaaataaaaccgattgaaatactcttcacct 1819  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 266
Target Start/End: Original strand, 9328792 - 9328820
Alignment:
Q  238 ccttcttcaacacttatttcgctaacctg 266  Q
    |||||||||||||||||||||||||||||    
T  9328792 ccttcttcaacacttatttcgctaacctg 9328820  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 266
Target Start/End: Original strand, 9382569 - 9382597
Alignment:
Q  238 ccttcttcaacacttatttcgctaacctg 266  Q
    |||||||||||||||||||||||||||||    
T  9382569 ccttcttcaacacttatttcgctaacctg 9382597  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 472
Target Start/End: Complemental strand, 18010772 - 18010744
Alignment:
Q  444 acaaattcatgctctgtctctagtgtttg 472  Q
    |||||||||||||||||||||||||||||    
T  18010772 acaaattcatgctctgtctctagtgtttg 18010744  T

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