View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1623_2D_low_55 (Length: 468)
Name: NF1623_2D_low_55
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_low_55 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 4 - 450
Target Start/End: Original strand, 34573282 - 34573728
Alignment:
| Q |
4 |
ctgatatgaaccactcacacttgaatccaacacttaaatgtcaaaaacaacaagcattgaaatattgttagcgtgtttataggtatgacttaatcttcaa |
103 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34573282 |
ctgatattaaccactcacacttgaatccaacacttaaatgtcaaaaacaacaagcattgaaatattgttagcgtgtttataggcatgacttaatcttcaa |
34573381 |
T |
|
| Q |
104 |
tggcaacaactccaaattattagctgaattcaaggagaatgttacgacacagtttgaaatatatggatctgatatcttacttattggccactgaggttaa |
203 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34573382 |
tggcaacatctccaaattattagctgaattcaaggagaatgttacgacacaatttgaaatacatggatctgatatcttacttattggccactgaggttaa |
34573481 |
T |
|
| Q |
204 |
acaaatgtctgaagaattctaaaatgaaaacttgtaaaccaatcttacaaagattaaagcttacaaaaggtgggggtgaccttgtcaatgcaactaattt |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34573482 |
acaaatgtctgaagaattctaaaatgaaaacttgtaaaccaatcttacaaagattaaagcttacaaaaggtgggggtaaccttgtcaatgcaactaattt |
34573581 |
T |
|
| Q |
304 |
cataggtttaaaggaaaatataagatatttaactacaacaagaccttacatatcttacacattgggacggtaaattatgaattaatgtcgacaatctaat |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34573582 |
cataggtttaaaggaaaatataagatatttaactacaacaagaccttacatatcttacacattgggatggtaaattatgaattaatgtcgacaatctaat |
34573681 |
T |
|
| Q |
404 |
cagcaaacaacaaaatggattagaagatatattaaaggtgtaattgt |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34573682 |
tagcaaacaacaaaatggattagaagatatattaaaggtgtaattgt |
34573728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 38500301 - 38500355
Alignment:
| Q |
12 |
aaccactcacacttgaatccaacacttaaatgtcaaaaacaacaagcattgaaat |
66 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
38500301 |
aaccactcacatttgaatccaacacttatatgtcaaaaacaacaagcatggaaat |
38500355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University