View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1623_2D_low_56 (Length: 448)
Name: NF1623_2D_low_56
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_low_56 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 13 - 431
Target Start/End: Complemental strand, 36964344 - 36963926
Alignment:
| Q |
13 |
atgaagacaaagtattgggaatggaaataaatccattatacataagcatggcaatgggattttcaactggattttgggtattttggggctcattaatact |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36964344 |
atgaagacaaagtattgggaatggaaataaatccattatacataagcatggctatgggattttcaactggattttgggtattttggggctcattaatact |
36964245 |
T |
|
| Q |
113 |
cattgcatcttggagacatgcttatttccgttttctaagcaacttgaatgataagatctatgtcactgtcgttgtcacacttaataaactgcggacgaag |
212 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
36964244 |
cattgcatcttggcgacatgcttatttccgttttctaagcaacttgaatgataagatctatgtcactgtcgttgtcacacttaataaactgcagaggaag |
36964145 |
T |
|
| Q |
213 |
cttcgcactcaacaatctcccatgtaatcaaactctttgtttgctctgttaatgtcttcagaaatataagagacaaaaattgtatcctgaatgttgatga |
312 |
Q |
| |
|
|||| |||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
36964144 |
cttcacactcaacaacctcccatgtaatcaagctctttgtttgctctgttattgtcttcagaaatataatagacaaaaattgtatcctgaatgttgatga |
36964045 |
T |
|
| Q |
313 |
ttttgaataaagaatgttcgtcttaaatatcaactatctataacggataacaactgtctatattctgtgtttgtctatcaagtataacaccacacagtga |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
36964044 |
ttttgaataaagaatgttcgtcttaaatatcaactatctataacggataacaactgtctatattctgtgtttgtctacctagtataacaccacacagtga |
36963945 |
T |
|
| Q |
413 |
cacagacatgagaagaatg |
431 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
36963944 |
cacagacatgagaagaatg |
36963926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 327
Target Start/End: Complemental strand, 36976129 - 36975815
Alignment:
| Q |
13 |
atgaagacaaagtattgggaatggaaataaatccattatacataagcatggcaatgggattttcaactggattttgggtattttggggctcattaatact |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36976129 |
atgaagacaaagtattgggaatggaaataaatccattctacataagcatggcaatgggattttcaactggattttgggtattttggggctcattaatact |
36976030 |
T |
|
| Q |
113 |
cattgcatcttggagacatgcttatttccgttttctaagcaacttgaatgataagatctatgtcactgtcgttgtcacacttaataaactgcggacgaag |
212 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||| ||||||||||| |||||| |||| |
|
|
| T |
36976029 |
cattgcatcttggaggcatgcttatttccgttttctaggcaacatgaatgataagatctatgtcactgtagttgtcgcacttaataaattgcggaagaag |
36975930 |
T |
|
| Q |
213 |
cttcgcactcaacaatctcccatgtaatcaaactctttgtttgctctgttaatgtcttcagaaatataagagacaaaaattgtatcctgaatgttgatga |
312 |
Q |
| |
|
||| |||||||||| ||||||||||| ||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||| || | ||||||| |
|
|
| T |
36975929 |
tttcacactcaacaacctcccatgtaaccaaactctttgtttgctctgttattgtgttcagaaatacaagagacaaaaattgtattgagagtattgatga |
36975830 |
T |
|
| Q |
313 |
ttttgaataaagaat |
327 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
36975829 |
ttttgagtaaagaat |
36975815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 72 - 348
Target Start/End: Complemental strand, 36970019 - 36969749
Alignment:
| Q |
72 |
ttttcaactggattttgggtattttggggctcattaatactcattgcatcttggagacatgcttatttccgttttctaagcaacttgaatgataagatct |
171 |
Q |
| |
|
|||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||| |
|
|
| T |
36970019 |
ttttcaactgcattttgggtattttggggatctttaatactcattgcatcttggagacatgcttatttctgttttctaagcaacatgaacgataagatct |
36969920 |
T |
|
| Q |
172 |
atgtcactgtcgttgtcacacttaataaactgcggacgaagcttcgcactcaacaatctcccatgtaatcaaactctttgtttgctctgttaatgtcttc |
271 |
Q |
| |
|
|||||||||| |||||||| |||||||| |||||| |||| ||| |||||||||| || |||||||| |||||||| | |||||||||||| ||| || |
|
|
| T |
36969919 |
atgtcactgttgttgtcacgtttaataaattgcggaggaagtttcacactcaacaacct-ccatgtaaccaaactctgtatttgctctgttattgtgtta |
36969821 |
T |
|
| Q |
272 |
agaaatataagagacaaaaattgtatcctgaatgttgatgattttgaataaagaatgttcgtcttaaatatcaacta |
348 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
36969820 |
agaaatataagagacaaaatttgtat-----gtgttgatgattttgaataaagaatgtttgtcttaaatatcaacta |
36969749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 46 - 177
Target Start/End: Complemental strand, 36973361 - 36973230
Alignment:
| Q |
46 |
cattatacataagcatggcaatgggattttcaactggattttgggtattttggggctcattaatactcattgcatcttggagacatgcttatttccgttt |
145 |
Q |
| |
|
|||| ||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36973361 |
cattctacataagcattgctatggggttttcaactggattttgggtattttggggctcattaatactcattgcatcttggagacatgcttatttccgttt |
36973262 |
T |
|
| Q |
146 |
tctaagcaacttgaatgataagatctatgtca |
177 |
Q |
| |
|
|||||||||| ||||||||| |||||| |||| |
|
|
| T |
36973261 |
tctaagcaacatgaatgataggatctaagtca |
36973230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 327
Target Start/End: Complemental strand, 36973218 - 36973109
Alignment:
| Q |
218 |
cactcaacaatctcccatgtaatcaaactctttgtttgctctgttaatgtcttcagaaatataagagacaaaaattgtatcctgaatgttgatgattttg |
317 |
Q |
| |
|
|||||||| | |||| |||||| |||||| | |||||||||| ||| || || ||||||| |||||||||||||||| || | ||||||||||||| |
|
|
| T |
36973218 |
cactcaacgacctccaatgtaaccaaactatgtgtttgctctattattgcgttaagaaatacaagagacaaaaattgtctcaagttagttgatgattttg |
36973119 |
T |
|
| Q |
318 |
aataaagaat |
327 |
Q |
| |
|
|||||||||| |
|
|
| T |
36973118 |
aataaagaat |
36973109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 17 - 393
Target Start/End: Original strand, 5868977 - 5869353
Alignment:
| Q |
17 |
agacaaagtattgggaatggaaataaatccattatacataagcatggcaatgggattttcaactggattttgggtattttggggctcattaatactcatt |
116 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
5868977 |
agacaaggtattggggatggaaataaatccattatacataagcatggctatggggttttcaactggattttgggtattttggggatctttaatactcatt |
5869076 |
T |
|
| Q |
117 |
gcatcttggagacatgcttatttccgttttctaagcaacttgaatgataagatctatgtcactgtcgttgtcacacttaataaactgcggacgaagcttc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||| |||||| |||||||||||||||||| |||| ||| |
|
|
| T |
5869077 |
gcatcttggagacatgcttatttccgttttataagcaacatgaatgataagatccatgtcactgtagttgtcgcacttaataaactgcggaggaagtttc |
5869176 |
T |
|
| Q |
217 |
gcactcaacaatctcccatgtaatcaaactctttgtttgctctgttaatgtcttcagaaatataagagacaaaaattgtatcctgaatgttgatgatttt |
316 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| ||||||| ||| | ||||||||||||| |
|
|
| T |
5869177 |
acactcaacaacctcccatgtaaccaaactctttgtttgctctgttattgtcttcagaaatagaagagacagaaattgtctccagtttgttgatgatttt |
5869276 |
T |
|
| Q |
317 |
gaataaagaatgttcgtcttaaatatcaactatctataacggataacaactgtctatattctgtgtttgtctatcaa |
393 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |||||||||| | |||||| |||||| || |||||| |
|
|
| T |
5869277 |
gaataaagaatgtttgtcttaaatatcaactatctataactgataacaactatatatattttgtgttagtgtatcaa |
5869353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University