View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623_2D_low_62 (Length: 399)
Name: NF1623_2D_low_62
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_low_62 |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 115 - 257
Target Start/End: Complemental strand, 33127636 - 33127494
Alignment:
| Q |
115 |
tcacgatctggaagattcacttctaggttgttgttgttgatctatttattgcaattcgctactactggtttgtgttttcgttgtgctactgctagcattg |
214 |
Q |
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| T |
33127636 |
tcacgatctggaagattcacttctaggttgttgttgttgatctatttattgcaattcgctactactggtttgtgttttcgttgtgctactgctagcattg |
33127537 |
T |
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| Q |
215 |
ggttgttgttggttcgagttcatcgtgaggtcgcacacctttt |
257 |
Q |
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| T |
33127536 |
ggttgttgttggttcgagttcatcgtgaggtcacacacctttt |
33127494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 17 - 121
Target Start/End: Original strand, 33127411 - 33127515
Alignment:
| Q |
17 |
catcaaagttggtacacgaagcaactaaaacgcattagcacaatccattgaactcgtaatacgagtgcaaaactaaataacaaaaaaggtgtgcgacctc |
116 |
Q |
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| T |
33127411 |
catcaaagttggtacacgaagcaactaaaacacattagcacaatccatcgaactcgtaatacgagtgcaaaaccaaataacaaaaaaggtgtgtgacctc |
33127510 |
T |
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| Q |
117 |
acgat |
121 |
Q |
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| T |
33127511 |
acgat |
33127515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 5e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 252 - 383
Target Start/End: Original strand, 54544 - 54675
Alignment:
| Q |
252 |
ccttttctgtcattgttttggagaaggatattccaaatttgaaaaatatactactttctattccggaaaagcggtatctaagcatgctaatgagggtaaa |
351 |
Q |
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| T |
54544 |
ccttttctgtcattgttttggagaaggatattccaaatttgaaaaatatactactttctattccggaaaagcggtatctaagcatgctaatgagggtaaa |
54643 |
T |
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| Q |
352 |
aaaggtacagaagcatttcctatggaacaaga |
383 |
Q |
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| T |
54644 |
aaaggtacagaagcatttcctttggaacaaga |
54675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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