View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623_2D_low_64 (Length: 393)
Name: NF1623_2D_low_64
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_low_64 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 6 - 375
Target Start/End: Complemental strand, 3434127 - 3433758
Alignment:
| Q |
6 |
tttggagttgatgtggactaaatatatacctcatagcaatgcaaatatttcaagttcctcaagcaaggataattggttcttaggctccattttactaatc |
105 |
Q |
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| T |
3434127 |
tttggagttgatgtggactaaatatatacctcatagtaatgcaaatattacaagttcctcaagcaaggataattggttcttaggctccattttactaatc |
3434028 |
T |
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| Q |
106 |
attgctactcttgcatggtcatccctctttgtgttacaagtaagacctcatgataattgataaacaaaatttggatatagattactacataaaaatgtta |
205 |
Q |
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| T |
3434027 |
attgctactcttgcatggtcatccctctttgtgttacaagtaagacctcatgataattgataaacaaaatttggatatagattactacataaaaatgtta |
3433928 |
T |
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| Q |
206 |
tattgattattttgtagttaatgtgagtcagaagtctcgcattaaattcctctcgagcaaaatttttatattgaattagaaaatgaaacatataagcaag |
305 |
Q |
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| T |
3433927 |
aattgattattttgtagttaatgtgagttagaagtctcgtattgaattcctctcgagcaaaattttcacattgaattagaaaatgaaacatataagcaag |
3433828 |
T |
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| Q |
306 |
agaaaccataaccctaatgctttaggattttggatggagatgtgatcatgtctctctgtcacgcacatgt |
375 |
Q |
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| T |
3433827 |
agaaaccataaccctgatgctttagggttttgaatggagatgtgatcatgtctctctgtcactcacatgt |
3433758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 56 - 169
Target Start/End: Complemental strand, 3375045 - 3374932
Alignment:
| Q |
56 |
caagttcctcaagcaaggataattggttcttaggctccattttactaatcattgctactcttgcatggtcatccctctttgtgttacaagtaagacctca |
155 |
Q |
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|||| |||||||||||| |||||||||| ||||| |||||||||||||||||| |||| |||||||| |||| |||||||| |||||||||||| |||| |
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| T |
3375045 |
caagatcctcaagcaagaataattggtttttaggttccattttactaatcatttctaccattgcatgggcatcactctttgttttacaagtaagatctca |
3374946 |
T |
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| Q |
156 |
tgataattgataaa |
169 |
Q |
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| T |
3374945 |
tgataattgataaa |
3374932 |
T |
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