View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1623_2D_low_68 (Length: 379)

Name: NF1623_2D_low_68
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1623_2D_low_68
NF1623_2D_low_68
[»] chr4 (3 HSPs)
chr4 (18-367)||(52734454-52734803)
chr4 (278-313)||(8422988-8423023)
chr4 (278-315)||(35684277-35684314)
[»] chr5 (2 HSPs)
chr5 (278-324)||(16945123-16945169)
chr5 (278-314)||(12521450-12521486)
[»] chr7 (1 HSPs)
chr7 (278-314)||(753354-753390)
[»] chr8 (2 HSPs)
chr8 (278-325)||(12496562-12496609)
chr8 (281-325)||(6950223-6950267)
[»] chr6 (2 HSPs)
chr6 (278-313)||(33068712-33068747)
chr6 (281-314)||(32408833-32408866)
[»] chr2 (4 HSPs)
chr2 (278-313)||(9477863-9477898)
chr2 (276-326)||(3101190-3101240)
chr2 (269-306)||(5133646-5133683)
chr2 (278-314)||(43203012-43203048)
[»] chr3 (2 HSPs)
chr3 (278-324)||(28289261-28289307)
chr3 (278-314)||(43116578-43116614)
[»] chr1 (2 HSPs)
chr1 (278-314)||(12519120-12519156)
chr1 (278-314)||(24263289-24263325)


Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 52734454 - 52734803
Alignment:
Q  18 tgtatctcagaaacttgcacaacagttcaatccaaatattcctatagagaaagctgttacacctccatcatcatggtatattgatccctctttcttccac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52734454 tgtatctcagaaacttgcacaacagttcaatccaaatattcctatagagaaagctgttacacctccatcatcatggtatattgatccctctttcttccac 52734553  T
Q  118 cttgagctcgatcgtgtcttctatagaggctggcaagctgttggtcagttttattcttcttaaagtttctattcattaattactttcattggtttagaag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52734554 cttgagctcgatcgtgtcttctatagaggctggcaagctgttggtcagttttattcttcttaaagtttctattcattaattactttcattggtttagaag 52734653  T
Q  218 attaaattattcattctatcaagaaagacgatagtttataatatgaatatgagacctggattggataaacagcttaattaagtgtttatagcataaaacc 317  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  52734654 attaaattattcattttatcaataaagacgatagtttataatatgaatatgaggcctggattggataaacagcttaattaagtgtttatagcataaaacc 52734753  T
Q  318 ttatcataagctatatctataacaaaacaaaaaagtcaaattactttcat 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52734754 ttatcataagctatatctataacaaaacaaaaaagtcaaattactttcat 52734803  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 313
Target Start/End: Complemental strand, 8423023 - 8422988
Alignment:
Q  278 ttggataaacagcttaattaagtgtttatagcataa 313  Q
    ||||||||||| ||||||||||||||||||||||||    
T  8423023 ttggataaacaacttaattaagtgtttatagcataa 8422988  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 35684314 - 35684277
Alignment:
Q  278 ttggataaacagcttaattaagtgtttatagcataaaa 315  Q
    |||||||| |||||||||||||||| ||||||||||||    
T  35684314 ttggataatcagcttaattaagtgtatatagcataaaa 35684277  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 278 - 324
Target Start/End: Complemental strand, 16945169 - 16945123
Alignment:
Q  278 ttggataaacagcttaattaagtgtttatagcataaaaccttatcat 324  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||    
T  16945169 ttggataaacagcctaattaagtgtttatagcataaaagcttatcat 16945123  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 12521450 - 12521486
Alignment:
Q  278 ttggataaacagcttaattaagtgtttatagcataaa 314  Q
    |||||||||||||||||||||||| || |||||||||    
T  12521450 ttggataaacagcttaattaagtgcttttagcataaa 12521486  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 753390 - 753354
Alignment:
Q  278 ttggataaacagcttaattaagtgtttatagcataaa 314  Q
    ||||||||||| |||||||||||||||||||||||||    
T  753390 ttggataaacaacttaattaagtgtttatagcataaa 753354  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 325
Target Start/End: Original strand, 12496562 - 12496609
Alignment:
Q  278 ttggataaacagcttaattaagtgtttatagcataaaaccttatcata 325  Q
    |||||||| ||||||||||||||||||||||||| ||  |||||||||    
T  12496562 ttggataaccagcttaattaagtgtttatagcattaacgcttatcata 12496609  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 325
Target Start/End: Original strand, 6950223 - 6950267
Alignment:
Q  281 gataaacagcttaattaagtgtttatagcataaaaccttatcata 325  Q
    |||||||| |||||||||||| ||||||||||||  |||||||||    
T  6950223 gataaacaacttaattaagtgcttatagcataaacgcttatcata 6950267  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 313
Target Start/End: Complemental strand, 33068747 - 33068712
Alignment:
Q  278 ttggataaacagcttaattaagtgtttatagcataa 313  Q
    |||||| |||||||||||||||||||||||||||||    
T  33068747 ttggatgaacagcttaattaagtgtttatagcataa 33068712  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 314
Target Start/End: Original strand, 32408833 - 32408866
Alignment:
Q  281 gataaacagcttaattaagtgtttatagcataaa 314  Q
    |||||||| |||||||||||||||||||||||||    
T  32408833 gataaacaacttaattaagtgtttatagcataaa 32408866  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 313
Target Start/End: Original strand, 9477863 - 9477898
Alignment:
Q  278 ttggataaacagcttaattaagtgtttatagcataa 313  Q
    ||||||||||| ||||||||||||||||||||||||    
T  9477863 ttggataaacaacttaattaagtgtttatagcataa 9477898  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 326
Target Start/End: Complemental strand, 3101240 - 3101190
Alignment:
Q  276 gattggataaacagcttaattaagtgtttatagcataaaaccttatcataa 326  Q
    |||||||||| ||||||||||||||  ||||||||||||  ||||||||||    
T  3101240 gattggataagcagcttaattaagtccttatagcataaatgcttatcataa 3101190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 306
Target Start/End: Original strand, 5133646 - 5133683
Alignment:
Q  269 agacctggattggataaacagcttaattaagtgtttat 306  Q
    |||||| | |||||||||||||||||||||||||||||    
T  5133646 agaccttgtttggataaacagcttaattaagtgtttat 5133683  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 43203012 - 43203048
Alignment:
Q  278 ttggataaacagcttaattaagtgtttatagcataaa 314  Q
    ||||||||| | |||||||||||||||||||||||||    
T  43203012 ttggataaatatcttaattaagtgtttatagcataaa 43203048  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 324
Target Start/End: Complemental strand, 28289307 - 28289261
Alignment:
Q  278 ttggataaacagcttaattaagtgtttatagcataaaaccttatcat 324  Q
    |||||||||||| |||||||||||||| |||||||||  ||||||||    
T  28289307 ttggataaacagtttaattaagtgtttttagcataaacacttatcat 28289261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 43116614 - 43116578
Alignment:
Q  278 ttggataaacagcttaattaagtgtttatagcataaa 314  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  43116614 ttggataaacaacttaatttagtgtttatagcataaa 43116578  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 12519156 - 12519120
Alignment:
Q  278 ttggataaacagcttaattaagtgtttatagcataaa 314  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  12519156 ttggataaacaacttaactaagtgtttatagcataaa 12519120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 24263325 - 24263289
Alignment:
Q  278 ttggataaacagcttaattaagtgtttatagcataaa 314  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  24263325 ttggataaacagtttaattaagtgcttatagcataaa 24263289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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