View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1623_2D_low_72 (Length: 369)
Name: NF1623_2D_low_72
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_low_72 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 4 - 344
Target Start/End: Complemental strand, 10397074 - 10396734
Alignment:
| Q |
4 |
gcatatgagcagagtcaactttgaaggagatagaatattgaagatggatgtattggttggccaaaagggatctagtacaatcctggagaaggtcaaattg |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10397074 |
gcatatgagcagagtcaactttgaaggagatagaatattgaagatggatgtattggttggccaaaagggatctagtacaatcctggagaaggtcgaattg |
10396975 |
T |
|
| Q |
104 |
gacgatattgcaactagttcttcaatgaaagaatgtgcaatttgtttggaggaattttgttgtggatcagaagaagaacacattgttcgtaccaagtgca |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10396974 |
aacgatattgcaactagttcttcaatgaaagaatgtgcaatttgtttggaggaattttgttgtggatcagaagaagaacacattgttcgtaccaagtgca |
10396875 |
T |
|
| Q |
204 |
tgcatgttttccatgagcattgtgttactaattggattatgcattgtgacattaccaatccacaatatccctgcccaatgtgtcgttcccaaattcaatg |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10396874 |
tgcatgttttccatgagcattgtgttactaattggattatgcattgtgacattaccaatccacaatatccctgcccaatgtgtcgttcccaaattcaatg |
10396775 |
T |
|
| Q |
304 |
atcacattttaaaataataatttgatgtgtttgcagaataa |
344 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
10396774 |
atcacaatataaaataataatttgatgtgtttgcagaataa |
10396734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 10407297 - 10406954
Alignment:
| Q |
1 |
taggcatatgagcagagtcaactttgaaggagatagaatattgaagatggatgtattggttggccaaaagggatctagtacaatcctggagaaggtcaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
10407297 |
taggcatatgagcagagtcaactttggaggagatagaatattgaagatggatgtattggttggccaaaagggatctagtacaatcctggagaaggtcgaa |
10407198 |
T |
|
| Q |
101 |
ttggacgatattgcaactagttcttcaatgaaagaatgtgcaatttgtttggaggaattttgttgtggatcagaagaagaacacattgttcgtaccaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10407197 |
ttggacgatattgcaactagttcttcaatgaaagaatgtgcaatttgtttggaggaattttgttgtggatcagaagaagaacacattgttcgtaccaagt |
10407098 |
T |
|
| Q |
201 |
gcatgcatgttttccatgagcattgtgttactaattggattatgcattgtgacattaccaatccacaatatccctgcccaatgtgtcgttcccaaattca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10407097 |
gcatgcatgttttccatgagcattgtgttactaattggattatgaattgtgacattaccaatccacaatatccctgcccaatgtgtcgttcccaaattca |
10406998 |
T |
|
| Q |
301 |
atgatcacattttaaaataataatttgatgtgtttgcagaataa |
344 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
10406997 |
atgatcacaatataaaataataatttgatgtgtttgcagaataa |
10406954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 184 - 318
Target Start/End: Complemental strand, 10381479 - 10381345
Alignment:
| Q |
184 |
cattgttcgtaccaagtgcatgcatgttttccatgagcattgtgttactaattggattatgcattgtgacattaccaatccacaatatccctgcccaatg |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | || |||||| || ||| ||||||| ||| ||||| ||||| | |||| |||||||| || |
|
|
| T |
10381479 |
cattgttcgtaccaagtgcatgcatgttttccatcaacaatgtgttgctcggtggcttatgcagtgttgcattagcaatcgattatattcctgcccattg |
10381380 |
T |
|
| Q |
284 |
tgtcgttcccaaattcaatgatcacattttaaaat |
318 |
Q |
| |
|
||||||||| |||||||||||||| ||||| |||| |
|
|
| T |
10381379 |
tgtcgttccgaaattcaatgatcatattttcaaat |
10381345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 135 - 229
Target Start/End: Complemental strand, 10429226 - 10429132
Alignment:
| Q |
135 |
aatgtgcaatttgtttggaggaattttgttgtggatcagaagaagaacacattgttcgtaccaagtgcatgcatgttttccatgagcattgtgtt |
229 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||| | ||||||| ||||||||||||| |||||| |||| ||||| ||||||||| |
|
|
| T |
10429226 |
aatgttcaatttgtttggaggaattttgtgatggatcagaagtaccacacattattcgtaccaagtgtatgcatttttttcatgaacattgtgtt |
10429132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 322 - 365
Target Start/End: Complemental strand, 10396730 - 10396687
Alignment:
| Q |
322 |
aatttgatgtgtttgcagaataaaggaatttagtccagaataat |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10396730 |
aatttgatgtgtttgcagaataaaggaatttagtccagaataat |
10396687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 322 - 365
Target Start/End: Complemental strand, 10406950 - 10406907
Alignment:
| Q |
322 |
aatttgatgtgtttgcagaataaaggaatttagtccagaataat |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10406950 |
aatttgatgtgtttgcagaataaaggaatttagtccagaataat |
10406907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 10429396 - 10429343
Alignment:
| Q |
1 |
taggcatatgagcagagtcaactttgaaggagatagaatattgaagatggatgt |
54 |
Q |
| |
|
|||| |||||| || |||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
10429396 |
taggtatatgaacacagtcaactttgaaggatatagaatattggagatggatgt |
10429343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University