View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623_2D_low_77 (Length: 357)
Name: NF1623_2D_low_77
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_low_77 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 9 - 340
Target Start/End: Complemental strand, 35951578 - 35951247
Alignment:
| Q |
9 |
gattattcttgttagataatgttgaaataaaaaaggaaagtaatcacatgaagaatagtaacaaaaatactaaatattagcaaacacattagtgaataca |
108 |
Q |
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| T |
35951578 |
gattattcttgttagataatgttgaaataaaaaaggaaagtaatcacatgaagaatagtaacaaaaatactaaatattagcaaacacattagtgaataaa |
35951479 |
T |
|
| Q |
109 |
gtgaaagaaattgtttaccagttctaataaccggagattgtgcaggaagtggactctcttgaggtttggtagttccaactttctcttttgaaccatattc |
208 |
Q |
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| T |
35951478 |
gtgaaagaagttgtttaccagttctaataaccggagattgtgcaggaagtggactctcttgaggtttggtagcttcaactttctcttttgaaccatattc |
35951379 |
T |
|
| Q |
209 |
atctgttggtattgaaaagcctagatgaagatcatgaaccacaaacattagagtaacattgtatgtaacctgtgaagttgatgtaacctacttttttcta |
308 |
Q |
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| T |
35951378 |
atctgttggtattgaaaagcctagatgaagatcatgaaccacaaacattagagtaacattgtatgtaacctgtgaagttgatgtaacctactttttccta |
35951279 |
T |
|
| Q |
309 |
taatcatattgttttccttgtcctagtcattg |
340 |
Q |
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| T |
35951278 |
taatcatattgttttccttgtcctagtcattg |
35951247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 9 - 327
Target Start/End: Complemental strand, 35971639 - 35971324
Alignment:
| Q |
9 |
gattattcttgttagataatgttgaaataaaaaaggaaagtaatcacatgaagaatagtaacaaaaatactaaatattagcaaacacattagtgaataca |
108 |
Q |
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| T |
35971639 |
gattattgttgttagataatgttgaaatagaacagaaaagtgatcacatgaataataataacaaaaatattaaatatttgcaaacacattagtgaataaa |
35971540 |
T |
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| Q |
109 |
gtgaaagaaattgtttaccagttctaataaccggagattgtgcaggaagtggactctcttgaggtttggtagttccaactttctcttttgaaccatattc |
208 |
Q |
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| T |
35971539 |
gtgaaagaaattgtttactagttataataacttgagattgtgcagaaactggactctctttaggtttaatatcttcaactttcgtctttgaaccatattc |
35971440 |
T |
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| Q |
209 |
atctgttggtattgaaaagcctagatgaagatcatgaaccacaaacattagagtaacattgtatgtaacctgtgaagttgatgtaacctacttttttcta |
308 |
Q |
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| T |
35971439 |
agctgttgg---tgaagagcctagatggacatcatgaaccacacacattagagtgaaattgtatgtaaaatgtgaaattgatgtaacctactacttcata |
35971343 |
T |
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| Q |
309 |
taatcatattgttttcctt |
327 |
Q |
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| T |
35971342 |
taatcatattgttttcctt |
35971324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 90 - 332
Target Start/End: Complemental strand, 35978669 - 35978425
Alignment:
| Q |
90 |
aaacacattagtgaatacagtgaaagaaattgtttaccagttctaataaccggagattgtgcaggaagtggactctcttgaggtttggtagttccaactt |
189 |
Q |
| |
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||||||||||||||||| ||| ||||||||||||||||| || |||| | ||| |||||| |||| ||||| || ||| ||||||| || |||||||| |
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| T |
35978669 |
aaacacattagtgaataaagtaaaagaaattgtttaccacttaaaatatcaggaaattgtgatggaactggacacttttgtggtttggcagctccaactt |
35978570 |
T |
|
| Q |
190 |
tctcttttgaaccatattcatctgttggtattgaaaagcctagatgaaga--tcatgaaccacaaacattagagtaacattgtatgtaacctgtgaagtt |
287 |
Q |
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| T |
35978569 |
tctcttttgacccatattcatttgttggcattgaagagcctatatattgatgtcatgaaccataaatattagagaaaaattgtatgtaacctgtgaattt |
35978470 |
T |
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| Q |
288 |
gatgtaacctacttttttctataatcatattgttttccttgtcct |
332 |
Q |
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| T |
35978469 |
gatgtaacctagtagttcctataatcaaattgttttccttatcct |
35978425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 111 - 279
Target Start/End: Complemental strand, 35955988 - 35955820
Alignment:
| Q |
111 |
gaaagaaattgtttaccagttctaataaccggagattgtgcaggaagtggactctcttgaggtttggtagttccaactttctcttttgaaccatattcat |
210 |
Q |
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|||||||||||||||||| || ||||||| ||||||||| ||| ||||||||| ||||||||| || | ||||| |||||||||||||| |||| |
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| T |
35955988 |
gaaagaaattgtttaccacttttaataactggagattgttgtagaactggactctcctgaggtttgacagctttaacttcctcttttgaaccatgctcat |
35955889 |
T |
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| Q |
211 |
ctgttggtattgaaaagcctagatgaagatcatgaaccacaaacattagagtaacattgtatgtaacct |
279 |
Q |
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||||||| ||||| | |||| ||| | |||||||||||||||||||||||||| |||||||||||||| |
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| T |
35955888 |
ttgttggttttgaagaacctaaatggacatcatgaaccacaaacattagagtaaaattgtatgtaacct |
35955820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 237
Target Start/End: Complemental strand, 35968627 - 35968449
Alignment:
| Q |
58 |
gaagaatagtaacaaaaatactaaatattagcaaacacattagtgaatacagtgaaagaaattgtttaccagttctaataaccggagattgtgcaggaag |
157 |
Q |
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||||||||||||| ||| || || ||| ||||| |||||||||| || |||||||||||| |||||||| || ||||| ||| ||| || |||| |
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| T |
35968627 |
gaagaatagtaaccaaattatcgaagatttgcaaaaacattagtgactaaagtgaaagaaat-gtttaccacttataatatgtggaaattctgatggaac |
35968529 |
T |
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| Q |
158 |
tggactctcttgaggtttggtagttccaactttctcttttgaaccatattcatctgttggtattgaaaagcctagatgaa |
237 |
Q |
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| T |
35968528 |
tggatacttttgaggtttggcagcatcaactttctcttctgaactatattcatttgttggtattgaagagcctagatgaa |
35968449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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