View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623_2D_low_80 (Length: 355)
Name: NF1623_2D_low_80
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_low_80 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 5267162 - 5266966
Alignment:
| Q |
1 |
agagtgtttcactataatatcattctaaatcgattataatcattatagacgttcattaagaagattatagtttgtaaagtaaactttctttcaccaaaac |
100 |
Q |
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| T |
5267162 |
agagtgtttcactataatatcattctaaatcgattataatcattatagacgttcattaagaagattatagtttgtaaagtaaactttctttcaccaaaac |
5267063 |
T |
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| Q |
101 |
aatatgnnnnnnngcttttacatgaataaaatcaggaatgtgttcacacttcacaatctctcaaacaacacacttcccatcccatcccatgacaata |
197 |
Q |
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| T |
5267062 |
aatatgtttttttgcttttacatgaataaaatcaggaatgtgttcacacttcacaagctctcaaacaacacacttcccatcccatcccatgacaata |
5266966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 244 - 339
Target Start/End: Complemental strand, 5266919 - 5266824
Alignment:
| Q |
244 |
tataacagccttcaaatgtgttggtcttcatcaaatggagatagttatagctgcaactaaaccaacaaaaagagacacaaacattgttccttgatg |
339 |
Q |
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| T |
5266919 |
tataacagccttcaaatgtgttggtcttcatcaaatggagatagttatagctgcaactaaaccaacaaaaagagacacaaacattgttccttgatg |
5266824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 277
Target Start/End: Complemental strand, 5269802 - 5269770
Alignment:
| Q |
245 |
ataacagccttcaaatgtgttggtcttcatcaa |
277 |
Q |
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| T |
5269802 |
ataacagccttcaaatgtgttggtcttcatcaa |
5269770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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