View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623_2D_low_83 (Length: 352)
Name: NF1623_2D_low_83
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_low_83 |
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Alignment Details
Target: chr6 (Bit Score: 280; Significance: 1e-157; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 20 - 323
Target Start/End: Complemental strand, 24108084 - 24107781
Alignment:
| Q |
20 |
atcatataacccgtccaacccacccacaaaaacaagcgtatctggataatctaatcgggataaatcctccgcgttcggcccactaacattagctgcattg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
24108084 |
atcatataacccgtccaacccacccacaaaaacaagcgtatctggataatctaatcgggataaatcctccgcattcggcccactaacattagctgcgttg |
24107985 |
T |
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| Q |
120 |
tgatctcggtttgaaccctctggcaaaaacaccttccacatccaatccgtcctcgccatcgaaatcatcaacgatccttcaaggcgaatctctgcttctg |
219 |
Q |
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| T |
24107984 |
tgatctcggttcgaaccctctggcaaaaacaccttccacatccaatctgtcctcgccatcgaaatcatcaacgatccttcaaggcgaatctctgcttctg |
24107885 |
T |
|
| Q |
220 |
ttcgctcctcgccaccaaaaaacggttgcattgaaatcaacccgactacccgaattctctggagccctgctttgcaagcccgaaccgcaacatgatgtgc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24107884 |
ttcgctcctcgccaccaaaaaacggttgcattgaaatcaacccggctacccggattctctggagccctgctttgcaagcccgaaccgcaacatgatgtgc |
24107785 |
T |
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| Q |
320 |
caaa |
323 |
Q |
| |
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|||| |
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| T |
24107784 |
caaa |
24107781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 319
Target Start/End: Complemental strand, 24113182 - 24112910
Alignment:
| Q |
47 |
aaaaacaagcgtatctggataatctaatcgggataaatcctccgcgttcggcccactaacattagctgcattgtgatctcggtttgaaccctctggcaaa |
146 |
Q |
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| T |
24113182 |
aaaaacaagcgtatccggataatccaaacccgacaaatcctccgcgttcggcccacatacattaaccgcgccatgatcccggtctgatccctccggtaaa |
24113083 |
T |
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| Q |
147 |
aacaccttccacatccaatccgtcctcgccatcgaaatcatcaacgatccttcaaggcgaatctctgcttctgttcgctcctcgccaccaaaaaacggtt |
246 |
Q |
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||| | ||||||||||||||||||||||||||||| | | ||||| || || | |||||| || || || | |||||| || ||||||||||| | |
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| T |
24113082 |
aacgctttccacatccaatccgtcctcgccatcgacactaagggtgatccctcgagcctaatctccgcctccgtcctctcctcccctccaaaaaacggct |
24112983 |
T |
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| Q |
247 |
gcattgaaatcaacccgactacccgaattctctggagccctgctttgcaagcccgaaccgcaacatgatgtgc |
319 |
Q |
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| T |
24112982 |
ggatggataccaacccaataacccggatttcccggagccccgctttacaaacccgaaccgcaacatgatgtgc |
24112910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 177
Target Start/End: Complemental strand, 24189550 - 24189409
Alignment:
| Q |
36 |
aacccacccacaaaaacaagcgtatctggataatctaatcgggataaatcctccgcgttcggcccactaacattagctgcattgtgatctcggtttgaac |
135 |
Q |
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| T |
24189550 |
aacccaccaacaaaaacaagcgtatccggataatccaaacccgacaaatcctccgcgttcggcccacatacattaaccgcgccatgatcccggtccgatc |
24189451 |
T |
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| Q |
136 |
cctctggcaaaaacaccttccacatccaatccgtcctcgcca |
177 |
Q |
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||||||| |||||||| |||||||||||||| ||||| |||| |
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| T |
24189450 |
cctctggtaaaaacactttccacatccaatcagtccttgcca |
24189409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 178
Target Start/End: Complemental strand, 24152481 - 24152339
Alignment:
| Q |
36 |
aacccacccacaaaaacaagcgtatctggataatctaatcgggataaatcctccgcgttcggcccactaacattagctgcattgtgatctcggtttgaac |
135 |
Q |
| |
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|||||||| | |||||||| ||| || ||| |||| || | |||||||||||||| |||||||| || |||||| | || ||||| |||||||| | |
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| T |
24152481 |
aacccaccaataaaaacaatcgtctccggaaaatccaaacccgataaatcctccgcattcggcccgcttacattaacggcgccatgatcccggtttgatc |
24152382 |
T |
|
| Q |
136 |
cctctggcaaaaacaccttccacatccaatccgtcctcgccat |
178 |
Q |
| |
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|||| || ||||||||||||||| |||||||||||| ||||| |
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| T |
24152381 |
cctccggtaaaaacaccttccaccaccaatccgtccttgccat |
24152339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 172
Target Start/End: Complemental strand, 24169297 - 24169172
Alignment:
| Q |
47 |
aaaaacaagcgtatctggataatctaatcgggataaatcctccgcgttcggcccactaacattagctgcattgtgatctcggtttgaaccctctggcaaa |
146 |
Q |
| |
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||||||||||||||| |||||||| || | || ||||||||||| |||||||| || |||||| | ||| ||||| ||||| || ||||| || || |
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| T |
24169297 |
aaaaacaagcgtatccggataatccaaacccgacaaatcctccgcattcggcccgcttacattaacagcaccatgatcccggttcgatccctccggtcaa |
24169198 |
T |
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| Q |
147 |
aacaccttccacatccaatccgtcct |
172 |
Q |
| |
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|||||||||||| |||||||||||| |
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| T |
24169197 |
aacaccttccaccaccaatccgtcct |
24169172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 312 - 352
Target Start/End: Original strand, 24107736 - 24107776
Alignment:
| Q |
312 |
tgatgtgccaaaatgtttcctagctggagacagcgcgggtg |
352 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||| |
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| T |
24107736 |
tgatgtgtcaaaatgtttcctagctggagacagcgcgggtg |
24107776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 24179744 - 24179683
Alignment:
| Q |
36 |
aacccacccacaaaaacaagcgtatctggataatctaatcgggataaatcctccgcgttcgg |
97 |
Q |
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|||||||| ||||||||||||||||| |||||||| || | || ||||||||||||||||| |
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| T |
24179744 |
aacccaccaacaaaaacaagcgtatccggataatccaaacccgacaaatcctccgcgttcgg |
24179683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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