View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623_2D_low_85 (Length: 352)
Name: NF1623_2D_low_85
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_low_85 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 20 - 352
Target Start/End: Complemental strand, 24108084 - 24107752
Alignment:
| Q |
20 |
atcatataacccgtccaacccacccacaaaaacaagcgtatctggataatctaatcgggataaatcctccgcgttcggcccactaacattagctgcattg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
24108084 |
atcatataacccgtccaacccacccacaaaaacaagcgtatctggataatctaatcgggataaatcctccgcattcggcccactaacattagctgcgttg |
24107985 |
T |
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| Q |
120 |
tgatctcggtttgaaccctctggcaaaaacaccttccacatccaatccgtcctcgccatcgaaatcatcaacgatccttcaaggcgaatctctgcttctg |
219 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24107984 |
tgatctcggttcgaaccctctggcaaaaacaccttccacatccaatctgtcctcgccatcgaaatcatcaacgatccttcaaggcgaatctctgcttctg |
24107885 |
T |
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| Q |
220 |
ttcgctcctcgccaccaaaaaacggttgcattgaaatcaacccgactacccgaattctctggagccctgctttgcaagcccgaaccgcaacatgatgtgc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24107884 |
ttcgctcctcgccaccaaaaaacggttgcattgaaatcaacccggctacccggattctctggagccctgctttgcaagcccgaaccgcaacatgatgtgc |
24107785 |
T |
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| Q |
320 |
caaatttgcacccgcgctgtctccagctaggaa |
352 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
24107784 |
caaatttgcacccgcgctgtctccagctaggaa |
24107752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 47 - 352
Target Start/End: Complemental strand, 24113182 - 24112877
Alignment:
| Q |
47 |
aaaaacaagcgtatctggataatctaatcgggataaatcctccgcgttcggcccactaacattagctgcattgtgatctcggtttgaaccctctggcaaa |
146 |
Q |
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||||||||||||||| |||||||| || | || |||||||||||||||||||||| |||||| | || ||||| |||| ||| ||||| || ||| |
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| T |
24113182 |
aaaaacaagcgtatccggataatccaaacccgacaaatcctccgcgttcggcccacatacattaaccgcgccatgatcccggtctgatccctccggtaaa |
24113083 |
T |
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| Q |
147 |
aacaccttccacatccaatccgtcctcgccatcgaaatcatcaacgatccttcaaggcgaatctctgcttctgttcgctcctcgccaccaaaaaacggtt |
246 |
Q |
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||| | ||||||||||||||||||||||||||||| | | ||||| || || | |||||| || || || | |||||| || ||||||||||| | |
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| T |
24113082 |
aacgctttccacatccaatccgtcctcgccatcgacactaagggtgatccctcgagcctaatctccgcctccgtcctctcctcccctccaaaaaacggct |
24112983 |
T |
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| Q |
247 |
gcattgaaatcaacccgactacccgaattctctggagccctgctttgcaagcccgaaccgcaacatgatgtgccaaatttgcacccgcgctgtctccagc |
346 |
Q |
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| T |
24112982 |
ggatggataccaacccaataacccggatttcccggagccccgctttacaaacccgaaccgcaacatgatgtgctaaatttgcaccggcactgtctccggc |
24112883 |
T |
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| Q |
347 |
taggaa |
352 |
Q |
| |
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||||| |
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| T |
24112882 |
gaggaa |
24112877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 36 - 352
Target Start/End: Complemental strand, 24189550 - 24189234
Alignment:
| Q |
36 |
aacccacccacaaaaacaagcgtatctggataatctaatcgggataaatcctccgcgttcggcccactaacattagctgcattgtgatctcggtttgaac |
135 |
Q |
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|||||||| ||||||||||||||||| |||||||| || | || |||||||||||||||||||||| |||||| | || ||||| |||| || | |
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| T |
24189550 |
aacccaccaacaaaaacaagcgtatccggataatccaaacccgacaaatcctccgcgttcggcccacatacattaaccgcgccatgatcccggtccgatc |
24189451 |
T |
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| Q |
136 |
cctctggcaaaaacaccttccacatccaatccgtcctcgccatcgaaatcatcaacgatccttcaaggcgaatctctgcttctgttcgctcctcgccacc |
235 |
Q |
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||||||| |||||||| |||||||||||||| ||||| |||| || | | | | || | |||||||||||||| || || || || || || || |
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| T |
24189450 |
cctctggtaaaaacactttccacatccaatcagtccttgccactgacacaaacggcatcccaactaggcgaatctctgcctccgtccgttcttctcctcc |
24189351 |
T |
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| Q |
236 |
aaaaaacggttgcattgaaatcaacccgactacccgaattctctggagccctgctttgcaagcccgaaccgcaacatgatgtgccaaatttgcacccgcg |
335 |
Q |
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||||||||||| || | || |||||| || | || |||||||||| |||||||| |||| |||||||||||| ||| |||||||| |||| ||| |
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| T |
24189350 |
gaaaaacggttggatcaatattgacccgataacacagatattctggagccccgctttgcatgccctaaccgcaacatggtgtaccaaatttccaccggcg |
24189251 |
T |
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| Q |
336 |
ctgtctccagctaggaa |
352 |
Q |
| |
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|| ||||| |||||||| |
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| T |
24189250 |
ctatctccggctaggaa |
24189234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 352
Target Start/End: Complemental strand, 24152481 - 24152165
Alignment:
| Q |
36 |
aacccacccacaaaaacaagcgtatctggataatctaatcgggataaatcctccgcgttcggcccactaacattagctgcattgtgatctcggtttgaac |
135 |
Q |
| |
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|||||||| | |||||||| ||| || ||| |||| || | |||||||||||||| |||||||| || |||||| | || ||||| |||||||| | |
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| T |
24152481 |
aacccaccaataaaaacaatcgtctccggaaaatccaaacccgataaatcctccgcattcggcccgcttacattaacggcgccatgatcccggtttgatc |
24152382 |
T |
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| Q |
136 |
cctctggcaaaaacaccttccacatccaatccgtcctcgccatcgaaatcatcaacgatccttcaaggcgaatctctgcttctgttcgctcctcgccacc |
235 |
Q |
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|||| || ||||||||||||||| |||||||||||| ||||| || | || | |||||| ||||| |||||| || || || | |||||| || || |
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| T |
24152381 |
cctccggtaaaaacaccttccaccaccaatccgtccttgccatagacaccaacggcgatccatcaagtttaatctccgcctcagtcctctcctccccgcc |
24152282 |
T |
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| Q |
236 |
aaaaaacggttgcattgaaatcaacccgactacccgaattctctggagccctgctttgcaagcccgaaccgcaacatgatgtgccaaatttgcacccgcg |
335 |
Q |
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||||||||| || || || | |||||||| | ||| ||| | ||||||||||||| ||| ||| ||| | || ||| ||||| ||||||||||| | |
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| T |
24152281 |
aaaaaacggctgaatcgataccaacccgataatccggatttcccggagccctgctttacaaaccctaactgtaagatggtgtgctaaatttgcaccagaa |
24152182 |
T |
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| Q |
336 |
ctgtctccagctaggaa |
352 |
Q |
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|||||||| || ||||| |
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| T |
24152181 |
ctgtctccggcaaggaa |
24152165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 47 - 352
Target Start/End: Complemental strand, 24169297 - 24168992
Alignment:
| Q |
47 |
aaaaacaagcgtatctggataatctaatcgggataaatcctccgcgttcggcccactaacattagctgcattgtgatctcggtttgaaccctctggcaaa |
146 |
Q |
| |
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||||||||||||||| |||||||| || | || ||||||||||| |||||||| || |||||| | ||| ||||| ||||| || ||||| || || |
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| T |
24169297 |
aaaaacaagcgtatccggataatccaaacccgacaaatcctccgcattcggcccgcttacattaacagcaccatgatcccggttcgatccctccggtcaa |
24169198 |
T |
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| Q |
147 |
aacaccttccacatccaatccgtcctcgccatcgaaatcatcaacgatccttcaaggcgaatctctgcttctgttcgctcctcgccaccaaaaaacggtt |
246 |
Q |
| |
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|||||||||||| |||||||||||| ||||| | | || | ||||| ||||| |||||| || || || | ||||| || ||||||||||| | |
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| T |
24169197 |
aacaccttccaccaccaatccgtcctttccatcaacaccaacggagatccctcaagtttaatctccgcctcggtctgttcctccccgccaaaaaacggct |
24169098 |
T |
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| Q |
247 |
gcattgaaatcaacccgactacccgaattctctggagccctgctttgcaagcccgaaccgcaacatgatgtgccaaatttgcacccgcgctgtctccagc |
346 |
Q |
| |
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| || | | |||||||| | ||| ||| |||||||||| |||| ||| ||| ||| |||| |||||||||||||||||||| || |||||||| || |
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| T |
24169097 |
gaatcaataccaacccgataatccggatttcctggagcccttctttacaaaccctaactgcaaggtgatgtgccaaatttgcaccggcactgtctccggc |
24168998 |
T |
|
| Q |
347 |
taggaa |
352 |
Q |
| |
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||||| |
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| T |
24168997 |
gaggaa |
24168992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 24179744 - 24179683
Alignment:
| Q |
36 |
aacccacccacaaaaacaagcgtatctggataatctaatcgggataaatcctccgcgttcgg |
97 |
Q |
| |
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|||||||| ||||||||||||||||| |||||||| || | || ||||||||||||||||| |
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| T |
24179744 |
aacccaccaacaaaaacaagcgtatccggataatccaaacccgacaaatcctccgcgttcgg |
24179683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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