View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1623_2D_low_86 (Length: 347)

Name: NF1623_2D_low_86
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1623_2D_low_86
NF1623_2D_low_86
[»] chr2 (3 HSPs)
chr2 (180-328)||(8020119-8020267)
chr2 (1-116)||(8020331-8020447)
chr2 (240-298)||(22391574-22391632)
[»] chr3 (17 HSPs)
chr3 (1-97)||(28002919-28003015)
chr3 (1-97)||(28036169-28036265)
chr3 (14-97)||(27919104-27919187)
chr3 (26-104)||(11419726-11419804)
chr3 (238-300)||(28159634-28159696)
chr3 (237-307)||(28148170-28148242)
chr3 (238-299)||(28184199-28184260)
chr3 (14-74)||(27460176-27460236)
chr3 (242-302)||(28481226-28481286)
chr3 (242-302)||(28510407-28510467)
chr3 (247-326)||(28035854-28035932)
chr3 (238-305)||(28053934-28054000)
chr3 (238-305)||(28064359-28064425)
chr3 (242-298)||(28082191-28082247)
chr3 (247-298)||(28002632-28002682)
chr3 (181-230)||(27348095-27348144)
chr3 (237-301)||(27460800-27460864)
[»] chr7 (1 HSPs)
chr7 (237-302)||(8693152-8693216)
[»] scaffold0043 (1 HSPs)
scaffold0043 (189-230)||(54240-54281)
[»] scaffold0257 (1 HSPs)
scaffold0257 (274-306)||(17766-17798)


Alignment Details
Target: chr2 (Bit Score: 141; Significance: 7e-74; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 180 - 328
Target Start/End: Complemental strand, 8020267 - 8020119
Alignment:
Q  180 tcaaaacgtccactttcaatggtaaatcatcattttcaagttcaaagatgtgcaataatatgtaattatttacagccaacgtgtaatagtttttaaaaat 279  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020267 tcaaaacgttcactttcaacggtaaatcatcattttcaagttcaaagatgtgcaataatatgtaattatttacagccaacgtgtaatagtttttaaaaat 8020168  T
Q  280 attgtatagagtgtgtaccgtagccaaacttgctagcatataaaccatt 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020167 attgtatagagtgtgtaccgtagccaaacttgctagcatataaaccatt 8020119  T

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Target: chr2; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 8020447 - 8020331
Alignment:
Q  1 actcgtgtccggatgcttgaactttggtgatttctgaacttggatattcattactagtatc-aaggcctttggactcatcatgtaattgcttgaatagct 99  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8020447 actcgtgtccggatgcttgaacttcggtgatttctgaacttggatattcattactagtatcaaaggcctttggactcatcatgtaattgcttgaatagct 8020348  T
Q  100 tcgtctcattctggaag 116  Q
    ||||| |||||||||||    
T  8020347 tcgtcacattctggaag 8020331  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 298
Target Start/End: Complemental strand, 22391632 - 22391574
Alignment:
Q  240 tgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtacc 298  Q
    |||||||| ||||||||||| |||||||| ||| |||||||||| | | ||||||||||    
T  22391632 tgtaattaattacagccaacatgtaatagatttcaaaaatattggacaaagtgtgtacc 22391574  T

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Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 28003015 - 28002919
Alignment:
Q  1 actcgtgtccggatgcttgaactttggtgatttctgaacttggatattcattactagtatcaaggcctttggactcatcatgtaattgcttgaatag 97  Q
    |||||| |||||||||||||||||  |||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||    
T  28003015 actcgtttccggatgcttgaacttcagtgatttctgaacttggatattcattacaagtatcgtggcctttggactcatcatgtaattgcttgaatag 28002919  T

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Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 28036265 - 28036169
Alignment:
Q  1 actcgtgtccggatgcttgaactttggtgatttctgaacttggatattcattactagtatcaaggcctttggactcatcatgtaattgcttgaatag 97  Q
    |||||| |||||||||||||||||  |||||||||||||||||||| ||||||| ||||||  |||||||||||||||||| |||||||||||||||    
T  28036265 actcgtttccggatgcttgaacttcagtgatttctgaacttggatactcattacaagtatcgtggcctttggactcatcatttaattgcttgaatag 28036169  T

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Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 97
Target Start/End: Complemental strand, 27919187 - 27919104
Alignment:
Q  14 tgcttgaactttggtgatttctgaacttggatattcattactagtatcaaggcctttggactcatcatgtaattgcttgaatag 97  Q
    |||||||||||  |||||||||||||||||||||||||||| ||||||  |||||||| |||||||||||||||||||||||||    
T  27919187 tgcttgaacttcagtgatttctgaacttggatattcattacaagtatcgtggcctttgaactcatcatgtaattgcttgaatag 27919104  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 11419804 - 11419726
Alignment:
Q  26 ggtgatttctgaacttggatattcattactagtatcaaggcctttggactcatcatgtaattgcttgaatagcttcgtc 104  Q
    ||||||||||||||||||||||||||||  ||||||  ||||||||| |||| | |||||||||||||| |||||||||    
T  11419804 ggtgatttctgaacttggatattcattagaagtatcgtggcctttggcctcaccgtgtaattgcttgaacagcttcgtc 11419726  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 238 - 300
Target Start/End: Complemental strand, 28159696 - 28159634
Alignment:
Q  238 tatgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgt 300  Q
    |||||||| ||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||    
T  28159696 tatgtaataatttacagcaaacatgtaatagtttttaaaaatattggatagagtgtgtaccgt 28159634  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 237 - 307
Target Start/End: Complemental strand, 28148242 - 28148170
Alignment:
Q  237 atatgtaattatttacagccaacgtgtaatagtttttaaaa--atattgtatagagtgtgtaccgtagccaaa 307  Q
    |||||||||||||||| |||||| |||||||||||||||||  |||||| ||||||| |||||||||||||||    
T  28148242 atatgtaattatttacggccaacatgtaatagtttttaaaaatatattggatagagtctgtaccgtagccaaa 28148170  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 28184260 - 28184199
Alignment:
Q  238 tatgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccg 299  Q
    |||||||| ||||||||| ||| ||||||||||||||||||||||| |||||||||||||||    
T  28184260 tatgtaataatttacagcaaacatgtaatagtttttaaaaatattggatagagtgtgtaccg 28184199  T

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Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 27460176 - 27460236
Alignment:
Q  14 tgcttgaactttggtgatttctgaacttggatattcattactagtatcaaggcctttggac 74  Q
    ||||| ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  27460176 tgcttcaacttcggtgatttctgaacttggatattcattacaagtatcatggcctttggac 27460236  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 302
Target Start/End: Original strand, 28481226 - 28481286
Alignment:
Q  242 taattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgtag 302  Q
    |||| ||||||||||||| |||||||||||| |||||||||| ||||| ||||||||||||    
T  28481226 taataatttacagccaacatgtaatagttttaaaaaatattggatagaatgtgtaccgtag 28481286  T

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Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 302
Target Start/End: Original strand, 28510407 - 28510467
Alignment:
Q  242 taattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgtag 302  Q
    |||| ||||||||||||| |||||||||||| |||||||||| ||||| ||||||||||||    
T  28510407 taataatttacagccaacatgtaatagttttaaaaaatattggatagaatgtgtaccgtag 28510467  T

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Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 326
Target Start/End: Complemental strand, 28035932 - 28035854
Alignment:
Q  247 atttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgtagccaaacttgctagcatataaacca 326  Q
    ||||||||||||| | |||||||||| |||||||||| |||||||| ||||||||| |||||| || || ||||||||||    
T  28035932 atttacagccaacatttaatagtttt-aaaaatattggatagagtgcgtaccgtagtcaaactcgccagaatataaacca 28035854  T

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Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 305
Target Start/End: Complemental strand, 28054000 - 28053934
Alignment:
Q  238 tatgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgtagcca 305  Q
    |||||||| ||||||||||||| | ||||||||||||| ||||||| |||||||||||||| ||||||    
T  28054000 tatgtaataatttacagccaacat-taatagtttttaagaatattggatagagtgtgtaccatagcca 28053934  T

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Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 305
Target Start/End: Complemental strand, 28064425 - 28064359
Alignment:
Q  238 tatgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgtagcca 305  Q
    |||||||| ||||||||||||| | ||||||||||||| ||||||| |||||||||||||| ||||||    
T  28064425 tatgtaataatttacagccaacat-taatagtttttaagaatattggatagagtgtgtaccatagcca 28064359  T

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Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 298
Target Start/End: Complemental strand, 28082247 - 28082191
Alignment:
Q  242 taattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtacc 298  Q
    |||| |||||||| |||| ||||||||||||||||||||||| ||||| ||||||||    
T  28082247 taataatttacagtcaacatgtaatagtttttaaaaatattggatagaatgtgtacc 28082191  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 298
Target Start/End: Complemental strand, 28002682 - 28002632
Alignment:
Q  247 atttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtacc 298  Q
    ||||||||||||| | |||||||||| |||||||||| ||||||||||||||    
T  28002682 atttacagccaacatttaatagtttt-aaaaatattggatagagtgtgtacc 28002632  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 27348144 - 27348095
Alignment:
Q  181 caaaacgtccactttcaatggtaaatcatcattttcaagttcaaagatgt 230  Q
    ||||| ||||||||||||| | |||||||||||||| |||| ||||||||    
T  27348144 caaaatgtccactttcaattgcaaatcatcattttctagtttaaagatgt 27348095  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 301
Target Start/End: Original strand, 27460800 - 27460864
Alignment:
Q  237 atatgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgta 301  Q
    ||||| || |||||||||||||| ||||||  |||| | ||| |||| |||||||||||||||||    
T  27460800 atatgcaaatatttacagccaacatgtaatgattttcagaaagattggatagagtgtgtaccgta 27460864  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 8693152 - 8693216
Alignment:
Q  237 atatgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgtag 302  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||    
T  8693152 atatgtaattatttacagccaacgtgtaatag-tttaaaaaatattggatagagtgtgtaccgtag 8693216  T

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Target: scaffold0043 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 54240 - 54281
Alignment:
Q  189 ccactttcaatggtaaatcatcattttcaagttcaaagatgt 230  Q
    ||||||||||| | ||||||||||||||||||| ||||||||    
T  54240 ccactttcaattgcaaatcatcattttcaagtttaaagatgt 54281  T

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Target: scaffold0257 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 306
Target Start/End: Complemental strand, 17798 - 17766
Alignment:
Q  274 aaaaatattgtatagagtgtgtaccgtagccaa 306  Q
    |||||||||| ||||||||||||||||||||||    
T  17798 aaaaatattggatagagtgtgtaccgtagccaa 17766  T

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