View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623_2D_low_89 (Length: 345)
Name: NF1623_2D_low_89
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_low_89 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 19 - 338
Target Start/End: Original strand, 4393645 - 4393964
Alignment:
| Q |
19 |
tcatcttcctctgagaaatctccaccaaaagaattaatacctgccaaagtattttcccttggtttccctaacatcaatgatgttgtgcctaattctccaa |
118 |
Q |
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| T |
4393645 |
tcatcttcctctgagaaatctccaccaaaagaattaatacctgccaaagtattttcccttggtttccctaacatcaatgatgttgtgcctaattctccaa |
4393744 |
T |
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| Q |
119 |
ctgcttctgtgaatcaaaaccaaacatattttcagactcaaaatgttactacccttcttccaccaccacaagtaactgcaccaactaccgagactttctt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4393745 |
ctgcttctgtgaatcaaaaccaaacatattttcagactcaaaatgttactacccttcttccaccaccacaagtaactgcaccaactactgagactttctt |
4393844 |
T |
|
| Q |
219 |
cttcccggtgcaacatcatggacaaggaatagtgcttcctaacaatgttacatcacaagggttttgcttctctgaactttccaacatggttcctgctcaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4393845 |
cttcccggtgcaacatcatggacaaggaatagtgcttcctaataatgttacatcacaagggttttgcttctctgaactttccaacatggttcctgctcaa |
4393944 |
T |
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| Q |
319 |
tcacatggtcagcaacacca |
338 |
Q |
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|||||||||||||||||||| |
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| T |
4393945 |
tcacatggtcagcaacacca |
4393964 |
T |
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