View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623_2D_low_91 (Length: 345)
Name: NF1623_2D_low_91
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_low_91 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 19 - 338
Target Start/End: Original strand, 5203947 - 5204265
Alignment:
| Q |
19 |
agtgttttaagcaactattcaaaattatggacattggacatgaattttaaaaatctaatttgtgaaaagcaacaattttttgctcccaacaaaacaaagt |
118 |
Q |
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| T |
5203947 |
agtgttttaagcaactattcaaaattatggacattggacatgaattttaaaaatctaatttgtgaaaagcaacaattttttgctcccaacaaaacaaagt |
5204046 |
T |
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| Q |
119 |
gtatatttagtgcttttcgtgcataagaaatgcttaccaagttactagtatttttccatttttgctatactaaacatggcatattcttgccttattcagt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5204047 |
gtatatttagtgcttttcgtgcataagaaatgcttaccaagttactagtatttttccatttttgcagtactaaacatggcatattcttgccttattcagt |
5204146 |
T |
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| Q |
219 |
tgttccttaatcacacttaacaccagtgacagtagaacaagtcattctatataaataataaattttcagtcatgaaatgagaaatcttgaggttccaacg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5204147 |
tgttccttaatcacacttaacaccagtgacagtagaacaagtcattctatataaataataaattttcagtcatgaaatgagaaatcttgaggttccaac- |
5204245 |
T |
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| Q |
319 |
gttactgcatgtagcttcat |
338 |
Q |
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|||||||||||||||||||| |
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| T |
5204246 |
gttactgcatgtagcttcat |
5204265 |
T |
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