View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623_2D_low_92 (Length: 341)
Name: NF1623_2D_low_92
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_low_92 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 14 - 324
Target Start/End: Complemental strand, 2081516 - 2081206
Alignment:
| Q |
14 |
aattattgttccatttcgtggtagatattgacacaaacttgaagaattttcagtttacaattgtgacatctaaaaaacgggtatacacaaacacaacata |
113 |
Q |
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| T |
2081516 |
aattattgttccatttcgtggtagatattgacacaaacttgaagaattttcagtttacaattgtgacatcttaaaaacgggtatacacaaacacaacata |
2081417 |
T |
|
| Q |
114 |
acattcataaaaacaagcaaggacaacccttgaatctataagaatgattttacaagacaatatgtgctccaccaatactggagaaacaacagttgtttct |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2081416 |
acattcataaaaacaagcaaggacaacccttgaatctataagaatgattttacaagacaatatgtgctccaccaatactggagaaacaacagttgtttct |
2081317 |
T |
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| Q |
214 |
ttaggtctcaaatatcccaaacactaaatgtcaaatccatatagtccccaaggagagaaacactaaaaaagatgttaccgattacctaacatgacaacca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2081316 |
ttaggtctcaaatatcccaaacactaaatgtcaaatccatatagtccccaaggagagaaacactaaaaaagatgttaccgattacctaacatgacaacca |
2081217 |
T |
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| Q |
314 |
caactcataac |
324 |
Q |
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||||||||||| |
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| T |
2081216 |
caactcataac |
2081206 |
T |
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