View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623_2D_low_94 (Length: 312)
Name: NF1623_2D_low_94
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_low_94 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 60 - 287
Target Start/End: Original strand, 12067573 - 12067793
Alignment:
| Q |
60 |
cttgttccacattttctctttacctcgttagtgaatggaccacagataaagaagtactgtcagattcactagccactta-ttttcccatcaatgaatttt |
158 |
Q |
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| T |
12067573 |
cttgttccacattttctctttacctcgttagtgaatggaccacagataaagaagtactgtcagattcactagccacttatttttcccatcaatga----- |
12067667 |
T |
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| Q |
159 |
ccttcctttttcatttcactgcatgaat---aaatacacnnnnnnngaggaataattcctatatcactcaatcagtagtactagctactagaacagttcc |
255 |
Q |
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|||||||||||||||||||||| ||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
12067668 |
------tttttcatttcactgcatgaatgaataatacactttttttgaggaataattccgatatcacttaatcagtagtactagctactagaacagttcc |
12067761 |
T |
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| Q |
256 |
acaaatataaccagtaatagctccatgtgaac |
287 |
Q |
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| T |
12067762 |
acaaatatagccagtaatagctccatgtgaac |
12067793 |
T |
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