View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1623_2D_low_96 (Length: 308)

Name: NF1623_2D_low_96
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1623_2D_low_96
NF1623_2D_low_96
[»] chr8 (13 HSPs)
chr8 (20-306)||(6391254-6391539)
chr8 (29-306)||(6410423-6410701)
chr8 (251-306)||(6363675-6363730)
chr8 (242-306)||(6424557-6424621)
chr8 (251-306)||(6321909-6321964)
chr8 (251-306)||(6332483-6332538)
chr8 (252-306)||(7459660-7459714)
chr8 (252-305)||(6370575-6370628)
chr8 (242-306)||(6352861-6352925)
chr8 (251-302)||(6289527-6289578)
chr8 (242-302)||(6275031-6275091)
chr8 (252-306)||(6263797-6263851)
chr8 (252-306)||(6457568-6457622)
[»] chr3 (1 HSPs)
chr3 (251-306)||(36744662-36744717)
[»] chr5 (1 HSPs)
chr5 (261-306)||(9604085-9604130)
[»] chr2 (1 HSPs)
chr2 (249-306)||(42693649-42693706)


Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 20 - 306
Target Start/End: Original strand, 6391254 - 6391539
Alignment:
Q  20 aacactctttacctgttctacactgactccatcctgcatgtatggctccaagtgttttttgtttattgtggttgtattctatatttgacatagcaagcaa 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6391254 aacactctttacctgttctacactgactccatcctgcatgtatggctcgaagtgttttttgtttattgtggttgtattctacatttgacatagcaagcaa 6391353  T
Q  120 tgaggttagttttcaattataaaatttagcatgaaaattgaacatggtagtcttttttatttatttcttttgtacttgcttaaaaatatctaactattaa 219  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6391354 tgaggttagttatcaattat-aaatttagcatgaaaattgaacatggtagtcttttttatttatttcttttgtacttgcttaaaaatatttaactattaa 6391452  T
Q  220 gtttaattaccccaannnnnnngatgacgtttggattcacaccagcaatcatctcccttgcaaattcctcatcagtcatccatgcag 306  Q
    |||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6391453 gtttaattaccccaacttttttgatgacgtttggattcacaccagcaatcatctcccttgcaaattcctcatcagtcatccatgcag 6391539  T

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Target: chr8; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 29 - 306
Target Start/End: Original strand, 6410423 - 6410701
Alignment:
Q  29 tacctgttctacactgactccatcctgcatgtatggctccaagtgttttttgtttattgtggttgtattctatatttgacatagcaagcaat--gaggtt 126  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||  ||||||    
T  6410423 tacctgttctacattgaccccatcctgcatgtatggctccaagtgttttttgtttattgtggttgtatcctacatttcacatagcaagcaatgagaggtt 6410522  T
Q  127 agttttcaattataaaatttagcatgaaaattgaacatggtagtcttttttatttatttcttttgtacttgcttaaaaatatctaactattaagtttaat 226  Q
    |||| |||||| | |||| |||||| |||||||| |||| | |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  6410523 agttatcaatt-ttaaatgtagcatcaaaattgagcatgattgtcttttttatttatttcttttatacttgcttaaaaatatttaactattaagtttaat 6410621  T
Q  227 taccccaannnnnnngatgacgtttggattcacaccagcaatcatctcccttgcaaattcctcatcagtcatccatgcag 306  Q
    |||| |||        || ||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||    
T  6410622 tacctcaactttttttatcacgtttggattcacaccagcaattatctctcttgcgaattcctcatcagtcatccatgcag 6410701  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 251 - 306
Target Start/End: Original strand, 6363675 - 6363730
Alignment:
Q  251 tggattcacaccagcaatcatctcccttgcaaattcctcatcagtcatccatgcag 306  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6363675 tggattcaccccagcaatcatctcccttgcaaattcctcatcagtcatccatgcag 6363730  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 242 - 306
Target Start/End: Original strand, 6424557 - 6424621
Alignment:
Q  242 gatgacgtttggattcacaccagcaatcatctcccttgcaaattcctcatcagtcatccatgcag 306  Q
    ||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  6424557 gatgatgtgtggattcactccagcaatcatctcccttgcaaattcctcatcagtcatccacgcag 6424621  T

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Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 251 - 306
Target Start/End: Original strand, 6321909 - 6321964
Alignment:
Q  251 tggattcacaccagcaatcatctcccttgcaaattcctcatcagtcatccatgcag 306  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  6321909 tggattcacaccagcaatcatctcccttgcaaattcttcatcagtcatccacgcag 6321964  T

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Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 251 - 306
Target Start/End: Original strand, 6332483 - 6332538
Alignment:
Q  251 tggattcacaccagcaatcatctcccttgcaaattcctcatcagtcatccatgcag 306  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  6332483 tggattcacaccagcaatcatctcccttgcaaattctccatcagtcatccatgcag 6332538  T

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Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 252 - 306
Target Start/End: Original strand, 7459660 - 7459714
Alignment:
Q  252 ggattcacaccagcaatcatctcccttgcaaattcctcatcagtcatccatgcag 306  Q
    |||||||| ||||||||||||| |||||| |||||||||||||||||||||||||    
T  7459660 ggattcaccccagcaatcatctgccttgcgaattcctcatcagtcatccatgcag 7459714  T

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Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 252 - 305
Target Start/End: Original strand, 6370575 - 6370628
Alignment:
Q  252 ggattcacaccagcaatcatctcccttgcaaattcctcatcagtcatccatgca 305  Q
    ||||||||||||||||||||||  ||||||||||||||||||| ||||||||||    
T  6370575 ggattcacaccagcaatcatctgtcttgcaaattcctcatcagccatccatgca 6370628  T

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Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 306
Target Start/End: Original strand, 6352861 - 6352925
Alignment:
Q  242 gatgacgtttggattcacaccagcaatcatctcccttgcaaattcctcatcagtcatccatgcag 306  Q
    ||||| || ||| ||||| ||||||||||||||||||||||||||||||||||||  ||||||||    
T  6352861 gatgatgtgtgggttcaccccagcaatcatctcccttgcaaattcctcatcagtctgccatgcag 6352925  T

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Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 251 - 302
Target Start/End: Original strand, 6289527 - 6289578
Alignment:
Q  251 tggattcacaccagcaatcatctcccttgcaaattcctcatcagtcatccat 302  Q
    |||||||||||||||||||||||| |||| |||||| |||||||||||||||    
T  6289527 tggattcacaccagcaatcatctctcttgtaaattcttcatcagtcatccat 6289578  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 302
Target Start/End: Original strand, 6275031 - 6275091
Alignment:
Q  242 gatgacgtttggattcacaccagcaatcatctcccttgcaaattcctcatcagtcatccat 302  Q
    ||||| || |||||| ||||||||||||||||| |||| |||||| || ||||||||||||    
T  6275031 gatgatgtgtggatttacaccagcaatcatctctcttgtaaattcttcgtcagtcatccat 6275091  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 306
Target Start/End: Original strand, 6263797 - 6263851
Alignment:
Q  252 ggattcacaccagcaatcatctcccttgcaaattcctcatcagtcatccatgcag 306  Q
    ||||| ||||||||||  ||||| ||| ||||||| |||||||||||||||||||    
T  6263797 ggatttacaccagcaagaatctctcttccaaattcatcatcagtcatccatgcag 6263851  T

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Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 306
Target Start/End: Original strand, 6457568 - 6457622
Alignment:
Q  252 ggattcacaccagcaatcatctcccttgcaaattcctcatcagtcatccatgcag 306  Q
    ||||| |||||||||| |||||| ||| ||||||| ||||| |||||||||||||    
T  6457568 ggatttacaccagcaaccatctctcttccaaattcttcatctgtcatccatgcag 6457622  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 306
Target Start/End: Complemental strand, 36744717 - 36744662
Alignment:
Q  251 tggattcacaccagcaatcatctcccttgcaaattcctcatcagtcatccatgcag 306  Q
    |||||| |||||||||| ||| || ||||||||||| |||||||||||||||||||    
T  36744717 tggatttacaccagcaagcatttctcttgcaaattcttcatcagtcatccatgcag 36744662  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 9604130 - 9604085
Alignment:
Q  261 ccagcaatcatctcccttgcaaattcctcatcagtcatccatgcag 306  Q
    ||||||| |||||| ||| ||||||| |||||||||||||||||||    
T  9604130 ccagcaaccatctctcttccaaattcttcatcagtcatccatgcag 9604085  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 306
Target Start/End: Original strand, 42693649 - 42693706
Alignment:
Q  249 tttggattcacaccagcaatcatctcccttgcaaattcctcatcagtcatccatgcag 306  Q
    |||||||| || ||||| | ||| || ||||||||||| |||||||||||||||||||    
T  42693649 tttggatttactccagctagcatttctcttgcaaattcttcatcagtcatccatgcag 42693706  T

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