View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1624-INSERTION-1 (Length: 390)
Name: NF1624-INSERTION-1
Description: NF1624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1624-INSERTION-1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 7 - 390
Target Start/End: Complemental strand, 45519550 - 45519168
Alignment:
| Q |
7 |
acactcatgaaaagatagagtataaaagaaatggaaagaaaattgcctactttcttgttcttgaattagtaggcaattttaaacaaatccattttgcaaa |
106 |
Q |
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| T |
45519550 |
acactcatgaaaagatagagtataaaagaaatggaaagaaaattgcctactttcttgttcttgaattagtaggcaattttaaacaaatccattttgcaaa |
45519451 |
T |
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| Q |
107 |
ttccagctaacatctaactgcttcaaggtcaaacttgaatgcaattattcaattgactctatgctagctccttttnnnnnnnnnttctattaacctgatc |
206 |
Q |
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| T |
45519450 |
ttccagctaacatctaactgcttcaaggtcaaacttgaatgcaattattcaattgactctatgctagctccttttaaaaaaaa-ttctattaacttgatc |
45519352 |
T |
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| Q |
207 |
tttccatggaagaaactttattacaccattacacttcacattttattgagaaaatgttgaaaacaaaacttcactttccatgttaacttgtgatcataaa |
306 |
Q |
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| T |
45519351 |
tttccatggaagaaactttattacaccattacacttcacattttattgagaaaatgttgaaaacaaaacttcactttccatgttaacttgtgatcataaa |
45519252 |
T |
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| Q |
307 |
aacttcattcttcaaaacccatcaatggatgaacacatggtcaagtccaaaacttctctcttagctctctttaaatcatcacca |
390 |
Q |
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| T |
45519251 |
aacttcattcttcaaaacccatcaatggatgaacacatggtcaagtccaaaacttctctcttagctctctttaaatcatcacca |
45519168 |
T |
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