View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1624-INSERTION-2 (Length: 595)
Name: NF1624-INSERTION-2
Description: NF1624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1624-INSERTION-2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 19 - 595
Target Start/End: Original strand, 43059081 - 43059650
Alignment:
| Q |
19 |
caattttcacaaaacccaacgaacccagataaaacaacatgttaattggaagaagaagcttgatcgacgaccaccaccacctgcttctctagcccgacaa |
118 |
Q |
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| T |
43059081 |
caattttcacaaaacccaacaaacccagataaaacaacatgttaattggaagaagaagcttgatcgacgaccaccaccacctgcttctctagcccgacaa |
43059180 |
T |
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| Q |
119 |
tgctccactgttattaactttcttaatctcaagccctattatgcttttcctaattgaggacttcatccagagacttcgttgcagatgtaattttcacgcc |
218 |
Q |
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| T |
43059181 |
tactatactgttattaactttcttaatctcaagccctattatgcttttcctaattgaggacttcatttagagacttcgttgcagatgtaattttcacgcc |
43059280 |
T |
|
| Q |
219 |
ctgcaatttgttcccagaatacaagaaaatgctggtttgcttcttaagaggttgcgcgggcatgcaagtcttattggaccattggatcgacatcttgttg |
318 |
Q |
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| T |
43059281 |
ctgcaatttgtt-ccagaatacaagaaactgcttggttgcttcttaagaggttgcgcgggcatgcaggtcttattggaccattggatcggcatcttgttg |
43059379 |
T |
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| Q |
319 |
gtccatttggagaattaaatttggagaagagtgaaaaaagttccaagaaagctttaaaatacttggctttacctttacatctcagatttgaaattaacat |
418 |
Q |
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| T |
43059380 |
gtccatttggagaattaaatttggagaagagtgaaaaaagttccaagaaagcttcaaaatacttgg------ctttacatctcagatttgaaattgacat |
43059473 |
T |
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| Q |
419 |
ggtagctcattccttatgtgaatttgggggaggtgaagaagagaggaaagaattggaagcatatcgtgagatccattttcctgcactggcattgatgaaa |
518 |
Q |
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| T |
43059474 |
ggtagctcattccttatgtgaatttgggggaggtgaagaagagaggaaagaattggaagcatatcgtgagatccattttcctgcactggcattgatgaaa |
43059573 |
T |
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| Q |
519 |
aatactacaaagtacgtatcacaannnnnnnatctcaactagttcctcacttatactggaaacatatcgtgaccacc |
595 |
Q |
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| T |
43059574 |
aatactacaaagtatgtatcacaatttttttatctcaactagttcttcacttatactggaaacatatcgtgaccacc |
43059650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 103 - 582
Target Start/End: Original strand, 55439292 - 55439764
Alignment:
| Q |
103 |
ttctctagcccgacaatgctccactgttattaactttcttaatctcaagccctattatgcttttcctaattgaggacttcatccagagacttcgttgcag |
202 |
Q |
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| T |
55439292 |
ttctctagcccggcaatgctctactgttattaactttcttaatctcaagccctattatgcttttcctaattgaggacttcatctagagacttcgttgcag |
55439391 |
T |
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| Q |
203 |
atgtaattttcacgccctgcaatttgttcccagaatacaagaaaatgctggtttgcttcttaagaggttgcgcgggcatgcaagtcttattggaccattg |
302 |
Q |
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| T |
55439392 |
atgtaattttcacgccctgcaatttgttcccagaatacaagaaactgctggtttgcttcttaagaggttgcgtgggcatgcaggtcttattggaccattg |
55439491 |
T |
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| Q |
303 |
gatcgacatcttgttggtccatttggagaattaaatttggagaagagtgaaaaaagttccaagaaagctttaaaatacttggctttacctttacatctca |
402 |
Q |
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| T |
55439492 |
gatcggcatcttgttggtccatttggagaattaaatttggagaagagtgaaaaaagttccaagaaagcttcaaaatacttgg------ctttacatctca |
55439585 |
T |
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| Q |
403 |
gatttgaaattaacatggtagctcattccttatgtgaatttgggggaggtgaagaagagaggaaagaattggaagcatatcgtgagatccattttcctgc |
502 |
Q |
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| T |
55439586 |
gatttgaaattgacatggtagctcattccttatgtgaatttgggggaggtgaagaagagaggaaagaattggaagcatatcgtgagatccattttcctgc |
55439685 |
T |
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| Q |
503 |
actggcattgatgaaaaatactacaaagtacgtatcacaannnnnnnatctcaactagttcctcacttatactggaaaca |
582 |
Q |
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| T |
55439686 |
actggcattgttgaaaaatactacaaagtatgtatcacaa-ttttttatctcaactagttcttcacttatactggaaaca |
55439764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 316 - 505
Target Start/End: Complemental strand, 55472005 - 55471821
Alignment:
| Q |
316 |
ttggtccatttggagaattaaatttggagaagagtgaaa-aaagttccaagaaagctttaaaatacttggctttacctttacatctcagatttgaaatta |
414 |
Q |
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| T |
55472005 |
ttggtccatttggagaattatatacggagaagagtaaaataaaattccaagaaagcttaaaaata------tttaactttacatctcagatttgaaattg |
55471912 |
T |
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| Q |
415 |
acatggtagctcattccttatgtgaatttgggggaggtgaagaagagaggaaagaattggaagcatatcgtgagatccattttcctgcact |
505 |
Q |
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| T |
55471911 |
acatggtatttcattctttatgtgaatttgggggaggtgaagaatagaagaaataattagaagcatatcgtaaaatccattttcctgcact |
55471821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 169 - 290
Target Start/End: Complemental strand, 55472130 - 55472004
Alignment:
| Q |
169 |
taattgaggacttcatccagagacttcgttgcagatgta--attttcacgccctgcaatttgttcccagaatacaagaaaa---tgctggtttgcttctt |
263 |
Q |
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| T |
55472130 |
taatcgaggacttcatctagagacttcgttgcagattttttattttcattccctgcaatttgttcccagaatacaagaaaccgctgctgctttgcttctt |
55472031 |
T |
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| Q |
264 |
aagaggttgcgcgggcatgcaagtctt |
290 |
Q |
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| T |
55472030 |
aagaggttgcacgggcatgcaagtctt |
55472004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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